mRNA_P-wetherbeei_contig876.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig876.5.1
Unique NamemRNA_P-wetherbeei_contig876.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A3C0TTP6_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TTP6_9PROT)

HSP 1 Score: 263 bits (673), Expect = 7.790e-88
Identity = 125/152 (82.24%), Postives = 138/152 (90.79%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGFPK 456
            VFNVLKTLMR+M L  +WN FA HIMGTS+LSPRHREMLIMRVGWLT+S+YEWGQHVLMSAPAGLTH DHLRI EGPKAAGW+ELE  LLQAADELL D  IED+TW IL +HL+T+Q+MDAVFT+GQYNMLAMALNT+GVQREEGVPGFPK
Sbjct:   48 VFNVLKTLMRNMKLLNAWNGFAGHIMGTSSLSPRHREMLIMRVGWLTQSEYEWGQHVLMSAPAGLTHEDHLRIKEGPKAAGWNELEGALLQAADELLDDTIIEDRTWEILCRHLSTEQIMDAVFTIGQYNMLAMALNTLGVQREEGVPGFPK 199          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A353LPI1_9PROT (Carboxymuconolactone decarboxylase family protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LPI1_9PROT)

HSP 1 Score: 258 bits (658), Expect = 9.340e-86
Identity = 123/151 (81.46%), Postives = 134/151 (88.74%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGFP 453
            VFNVLKTLMRHMDL +SWN FA HIMGTS+L P+HREMLIMRVGWLT+S+YEWGQHVLMS PAGLTH DHLRI EGPKA GW ELE+TLLQAADELL DA IE+ TW  L KHL+T+Q+MD VFTVGQYNMLAM LNT+GVQREEGVPGFP
Sbjct:   34 VFNVLKTLMRHMDLLRSWNGFANHIMGTSSLDPKHREMLIMRVGWLTQSEYEWGQHVLMSKPAGLTHDDHLRIKEGPKAEGWSELEATLLQAADELLDDAIIENATWDTLSKHLSTEQLMDVVFTVGQYNMLAMGLNTLGVQREEGVPGFP 184          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A2E6LSR4_9GAMM (Carboxymuconolactone decarboxylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E6LSR4_9GAMM)

HSP 1 Score: 194 bits (493), Expect = 1.060e-59
Identity = 96/150 (64.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGF 450
            VFNVLKTLMRHM L KSWN  A ++M  S+LSPRHRE+LIMRV W T SDYEWGQHVLMS  AGL+  DH RI  GP   GW  +E  LL+AADELL + ++ + TW  L + L   Q MDA+FTVGQY MLAMAL T+GV+RE GVPGF
Sbjct:  103 VFNVLKTLMRHMPLLKSWNPLAGYLMTGSSLSPRHRELLIMRVAWQTGSDYEWGQHVLMSQAAGLSEQDHRRIKAGPDDPGWPAIERALLKAADELLDEQYVSEPTWESLAEQLTDVQRMDAIFTVGQYAMLAMALKTLGVEREPGVPGF 252          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A7V1EPX9_9GAMM (Carboxymuconolactone decarboxylase family protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7V1EPX9_9GAMM)

HSP 1 Score: 186 bits (472), Expect = 1.860e-57
Identity = 90/150 (60.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGF 450
            VFNV+ TLMR+M L  +WN  AMH++ TSTL  + REM+IMRVG+LT  +YEWGQHVLMS  AGLT  DH RI  G  A GW E+ES +L   DEL+ +  I DKTW +    L+T+Q+ D +FT+GQYNMLAMALN++GVQRE GVPGF
Sbjct:   34 VFNVMSTLMRNMPLLTNWNGLAMHLVTTSTLDAKLREMVIMRVGFLTDCEYEWGQHVLMSESAGLTPDDHSRIKLGATAPGWTEVESAVLLVTDELIKETMISDKTWDLASAQLDTEQLTDLIFTIGQYNMLAMALNSLGVQREPGVPGF 183          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A523MHX6_9GAMM (Carboxymuconolactone decarboxylase family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523MHX6_9GAMM)

HSP 1 Score: 184 bits (466), Expect = 1.670e-56
Identity = 90/147 (61.22%), Postives = 111/147 (75.51%), Query Frame = 1
Query:   10 VLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGF 450
            V+ TLM HM L+ + N    HIM  S+L+PR RE+LIMRVGW T+ +Y+WGQHVLMS  AGL+  DH RI +G  AAGWDELES LL A DELLAD  I D TW +L +HL T+Q++D +FTVG Y+M+AM+LN IGVQRE G+PGF
Sbjct:   37 VIMTLMHHMPLFTNLNVLGRHIMSGSSLTPRQREILIMRVGWNTQCEYQWGQHVLMSQSAGLSAEDHERIKQG-SAAGWDELESALLTAVDELLADTMIGDATWGVLGQHLATEQLIDMIFTVGHYHMVAMSLNAIGVQREAGIPGF 182          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A7K4HC51_9ARCH (Carboxymuconolactone decarboxylase family protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A7K4HC51_9ARCH)

HSP 1 Score: 178 bits (452), Expect = 2.160e-54
Identity = 79/152 (51.97%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGFPK 456
            V N++ TL  +  LYK W  F  H++  S+L PR RE+LI+R+GWL +++YEWGQHV++   AGL   + ++IIEGPK+ GW+  ++TLL+A DEL  D+FI D TW IL    N  Q++D VFTVGQYN+++M LNT+G+Q EEG+ GFPK
Sbjct:   36 VSNLMATLANYSKLYKRWRVFGNHVLFKSSLPPRERELLILRIGWLCQAEYEWGQHVIIGKQAGLNDEEIIQIIEGPKSKGWNRFDATLLRAVDELYIDSFISDATWQILATKYNKHQLIDLVFTVGQYNLVSMVLNTLGIQLEEGIDGFPK 187          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A353LMM5_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LMM5_9PROT)

HSP 1 Score: 177 bits (448), Expect = 9.320e-54
Identity = 84/151 (55.63%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMG-TSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGF 450
            V+NV+ TL  H + YK +  +  H++G TS+L PR RE+LI+R+GWL +++YEWGQHVL+   AGLT  +  RI EGP A GWD  ++TLL+A DEL ADAFI DKTW  L +  N  Q+MD VF VGQYNM++MALN+ GVQ ++GV GF
Sbjct:   39 VYNVIGTLANHWEAYKKFGVWGNHVLGDTSSLPPREREILILRIGWLCQAEYEWGQHVLIGKQAGLTDEEIARIKEGPDAPGWDAFDATLLRAVDELRADAFISDKTWNALAERYNKHQLMDVVFAVGQYNMVSMALNSFGVQLDDGVKGF 189          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A7Y4U6F3_9DELT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4U6F3_9DELT)

HSP 1 Score: 176 bits (447), Expect = 1.100e-53
Identity = 86/151 (56.95%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMG-TSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGF 450
            V+NV+ T+ RH   +K +  +A HIMG TSTL PR RE+LI+R+GWL +++YEWGQHV+    AGLT  +  RI  GP A GW   ++TLL+A DEL  DAFI D TWA L +  NTQQ+MD VFTVGQYN+++MALNT GVQ ++GV GF
Sbjct:   33 VYNVMATMSRHWPAWKKFGVWAYHIMGDTSTLVPREREILILRIGWLCQAEYEWGQHVIFGKKAGLTDVEIERIKAGPDAPGWAPFDATLLRATDELHKDAFISDATWAALSQRYNTQQLMDVVFTVGQYNLVSMALNTFGVQLDKGVKGF 183          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A7C1QV94_9ARCH (Carboxymuconolactone decarboxylase family protein n=2 Tax=root TaxID=1 RepID=A0A7C1QV94_9ARCH)

HSP 1 Score: 173 bits (438), Expect = 1.540e-52
Identity = 78/152 (51.32%), Postives = 108/152 (71.05%), Query Frame = 1
Query:    1 VFNVLKTLMRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGFPK 456
            + N+ KTL+RH  L K W+ FA H++  S+L  R RE+LI+R+GWL +S+YEWGQHV +    GLT  +  RIIEGP + GWD  ++ LL+A DEL  + FI D TW  L +  NT Q++D +FTVGQYN+++MALNT+G+Q E+G  GFP+
Sbjct:   16 ILNIFKTLVRHEKLLKRWSVFATHVLLKSSLPAREREILILRIGWLCQSEYEWGQHVKIGKENGLTDDEIQRIIEGPDSDGWDRFDAVLLKAVDELYHNTFISDLTWKALTERYNTHQLLDLIFTVGQYNLVSMALNTLGIQLEKGTKGFPE 167          
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Match: A0A1Y5FG35_9GAMM (Carboxymuconolactone decarboxylase n=1 Tax=Gammaproteobacteria bacterium 54_18_T64 TaxID=1856296 RepID=A0A1Y5FG35_9GAMM)

HSP 1 Score: 173 bits (439), Expect = 1.800e-52
Identity = 81/150 (54.00%), Postives = 113/150 (75.33%), Query Frame = 1
Query:    4 FNVLKTLMRHMDLYKSWNSFAMHIMG-TSTLSPRHREMLIMRVGWLTKSDYEWGQHVLMSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWAILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGF 450
            +NVL TL RH    + + ++A HIMG TS L+PR RE+LI+R+GWL +++YEWGQHV+ +  AGL+  +  R+ EG + AGW + ++TLL+A DEL ++AF+ DKTWA L +  N QQ+MD VFTVGQYNM++MALN+ GVQ ++GV GF
Sbjct:   34 YNVLGTLSRHWPAAQKFTTWAFHIMGDTSKLAPREREILILRIGWLCQAEYEWGQHVIFARDAGLSDEEIARVKEGAEGAGWSDFDATLLRAVDELHSEAFVSDKTWAALAEQYNEQQLMDVVFTVGQYNMVSMALNSFGVQLDKGVEGF 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig876.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TTP6_9PROT7.790e-8882.24Carboxymuconolactone decarboxylase family protein ... [more]
A0A353LPI1_9PROT9.340e-8681.46Carboxymuconolactone decarboxylase family protein ... [more]
A0A2E6LSR4_9GAMM1.060e-5964.00Carboxymuconolactone decarboxylase n=1 Tax=Gammapr... [more]
A0A7V1EPX9_9GAMM1.860e-5760.00Carboxymuconolactone decarboxylase family protein ... [more]
A0A523MHX6_9GAMM1.670e-5661.22Carboxymuconolactone decarboxylase family protein ... [more]
A0A7K4HC51_9ARCH2.160e-5451.97Carboxymuconolactone decarboxylase family protein ... [more]
A0A353LMM5_9PROT9.320e-5455.63Carboxymuconolactone decarboxylase family protein ... [more]
A0A7Y4U6F3_9DELT1.100e-5356.95Carboxymuconolactone decarboxylase family protein ... [more]
A0A7C1QV94_9ARCH1.540e-5251.32Carboxymuconolactone decarboxylase family protein ... [more]
A0A1Y5FG35_9GAMM1.800e-5254.00Carboxymuconolactone decarboxylase n=1 Tax=Gammapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig876contigP-wetherbeei_contig876:3438..3896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog96561.Dole_1053
PFAMsCMD
Model size459
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-48
EggNOG OGsCOG2128@1|root,COG2128@2|Bacteria,1PSNE@1224|Proteobacteria,42XCT@68525|delta/epsilon subdivisions,2WSJD@28221|Deltaproteobacteria,2MP2A@213118|Desulfobacterales
DescriptionCarboxymuconolactone decarboxylase family
Cds size435
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187058.5073245-UTR-P-wetherbeei_contig876:3437..34611683187058.5073245-UTR-P-wetherbeei_contig876:3437..3461Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig876 3438..3461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187058.5175807-CDS-P-wetherbeei_contig876:3461..38961683187058.5175807-CDS-P-wetherbeei_contig876:3461..3896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig876 3462..3896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig876.5.1prot_P-wetherbeei_contig876.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig876 3462..3896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig876.5.1

>prot_P-wetherbeei_contig876.5.1 ID=prot_P-wetherbeei_contig876.5.1|Name=mRNA_P-wetherbeei_contig876.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MRHMDLYKSWNSFAMHIMGTSTLSPRHREMLIMRVGWLTKSDYEWGQHVL
MSAPAGLTHADHLRIIEGPKAAGWDELESTLLQAADELLADAFIEDKTWA
ILLKHLNTQQVMDAVFTVGQYNMLAMALNTIGVQREEGVPGFPK*
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mRNA from alignment at P-wetherbeei_contig876:3438..3896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig876.5.1 ID=mRNA_P-wetherbeei_contig876.5.1|Name=mRNA_P-wetherbeei_contig876.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig876:3438..3896+ (Phaeothamnion wetherbeei SAG_119_79)
GTATTTAATGTCCTGAAAACCCTGATGCGGCATATGGATCTGTATAAATC CTGGAACAGCTTTGCCATGCATATTATGGGGACATCCACCCTTAGCCCCC GGCATCGGGAAATGCTGATCATGCGGGTCGGCTGGCTGACCAAATCGGAT TATGAATGGGGCCAGCATGTGCTGATGAGCGCACCTGCGGGACTGACCCA TGCAGACCATCTGCGTATCATAGAAGGCCCGAAAGCGGCGGGATGGGATG AGCTGGAAAGCACGCTGTTGCAGGCCGCCGATGAATTGCTGGCGGACGCC TTTATTGAGGACAAGACCTGGGCGATCCTGCTTAAACATCTGAACACCCA ACAGGTCATGGACGCGGTGTTTACGGTTGGTCAGTATAATATGCTGGCGA TGGCGCTGAACACGATCGGGGTGCAGCGTGAAGAGGGTGTACCAGGCTTT CCCAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig876:3438..3896+

>mRNA_P-wetherbeei_contig876.5.1 ID=mRNA_P-wetherbeei_contig876.5.1|Name=mRNA_P-wetherbeei_contig876.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig876:3438..3896+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCATATGGATCTGTATAAATCCTGGAACAGCTTTGCCATGCATAT
TATGGGGACATCCACCCTTAGCCCCCGGCATCGGGAAATGCTGATCATGC
GGGTCGGCTGGCTGACCAAATCGGATTATGAATGGGGCCAGCATGTGCTG
ATGAGCGCACCTGCGGGACTGACCCATGCAGACCATCTGCGTATCATAGA
AGGCCCGAAAGCGGCGGGATGGGATGAGCTGGAAAGCACGCTGTTGCAGG
CCGCCGATGAATTGCTGGCGGACGCCTTTATTGAGGACAAGACCTGGGCG
ATCCTGCTTAAACATCTGAACACCCAACAGGTCATGGACGCGGTGTTTAC
GGTTGGTCAGTATAATATGCTGGCGATGGCGCTGAACACGATCGGGGTGC
AGCGTGAAGAGGGTGTACCAGGCTTTCCCAAATAG
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