mRNA_P-wetherbeei_contig876.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig876.3.1
Unique NamemRNA_P-wetherbeei_contig876.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A3C0TX73_9PROT (Two-component system response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TX73_9PROT)

HSP 1 Score: 227 bits (579), Expect = 3.420e-75
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
            MSKTVL+CEDN+LNMKLF DLL+AHGY+TI TSDGMDALEL QKHKPDL+LMDIQLPGVSGLEVTKWIKEDD+IRHIPVIAITAFAMKGDEDRI G GCEAYIAKPISVSDFLTTI+RFLD
Sbjct:    1 MSKTVLVCEDNKLNMKLFLDLLNAHGYQTIPTSDGMDALELAQKHKPDLILMDIQLPGVSGLEVTKWIKEDDNIRHIPVIAITAFAMKGDEDRINGSGCEAYIAKPISVSDFLTTIRRFLD 121          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A353LRG3_9PROT (Two-component system response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LRG3_9PROT)

HSP 1 Score: 213 bits (541), Expect = 2.130e-69
Identity = 99/121 (81.82%), Postives = 112/121 (92.56%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
            M+K VLICEDNELNMKLFHDLL AHGY+TIQTSDGMDA+EL + H PDL+LMDIQLP VSGLEVTKWIKEDDD+R IPVIA+TAFAMKGDEDRI+ GGC+AYIAKPISV++FL T++RFLD
Sbjct:    1 MAKKVLICEDNELNMKLFHDLLTAHGYETIQTSDGMDAMELARTHHPDLILMDIQLPEVSGLEVTKWIKEDDDLRDIPVIAVTAFAMKGDEDRIRSGGCQAYIAKPISVTEFLETVQRFLD 121          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A516H4G5_9PROT (Response regulator n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H4G5_9PROT)

HSP 1 Score: 202 bits (514), Expect = 3.080e-65
Identity = 92/121 (76.03%), Postives = 111/121 (91.74%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
            MSKTVLI EDNELNMKLFHDLLDAHGY+T+QT DGM+AL +V+KH+PDL+LMDIQLP VSGLEV KWIKEDD++R IPV+A+TAFAMKGDE++++ GGC+AYIAKPISV  F+ T+K+FLD
Sbjct:    1 MSKTVLIVEDNELNMKLFHDLLDAHGYQTLQTKDGMEALAMVRKHRPDLILMDIQLPEVSGLEVIKWIKEDDNLRSIPVVAVTAFAMKGDEEKMREGGCDAYIAKPISVGKFIETVKQFLD 121          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A3M1PRM5_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1PRM5_9PROT)

HSP 1 Score: 200 bits (509), Expect = 1.840e-64
Identity = 91/120 (75.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
            M+K +LI EDNELNMKLF DLL+AH Y+TIQT DG++AL+L ++HKPDL+LMDIQLP VSGLEVTKWIKEDD++RHIPV+A+TAFAMKGDE++I+ GGCEAYIAKPISV+DFL T++RFL
Sbjct:    1 MTKKILIVEDNELNMKLFSDLLEAHSYETIQTRDGLEALDLAREHKPDLILMDIQLPEVSGLEVTKWIKEDDELRHIPVVAVTAFAMKGDEEKIREGGCEAYIAKPISVTDFLETVRRFL 120          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A1Y5SS27_9PROT (Polar-differentiation response regulator DivK n=2 Tax=Sneathiellaceae TaxID=510685 RepID=A0A1Y5SS27_9PROT)

HSP 1 Score: 200 bits (508), Expect = 2.290e-64
Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
            M+KTVLI EDN+LNMKLFHDLLDAHGY T+QT DGM+AL L ++H+PDL+LMDIQLP VSGLEVTKWIKEDDD+R IPVIA+TAFAMKGDE++I+ GGCEAYIAKPISV  F+ T+K FL
Sbjct:    1 MTKTVLIVEDNDLNMKLFHDLLDAHGYATLQTKDGMEALSLAREHQPDLILMDIQLPEVSGLEVTKWIKEDDDLRAIPVIAVTAFAMKGDEEKIREGGCEAYIAKPISVGKFIETVKSFL 120          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A7Y8SYM6_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8SYM6_9PROT)

HSP 1 Score: 199 bits (506), Expect = 4.630e-64
Identity = 91/120 (75.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
            MSKTVLI EDN+LNMKLFHDLLDA+GY+T+QT DG++ALEL + H+PDL+LMDIQLP VSGLEVTKW+KEDD +R IPVIA+TAFAMKGDE++I+ GGCEAY++KPISV++FL T+KRFL
Sbjct:    1 MSKTVLIVEDNDLNMKLFHDLLDANGYRTLQTKDGLEALELARAHRPDLILMDIQLPEVSGLEVTKWLKEDDQLRAIPVIAVTAFAMKGDEEKIREGGCEAYLSKPISVANFLDTVKRFL 120          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A8J6LVM3_9PROT (Response regulator n=1 Tax=Euryhalocaulis sp. TaxID=2744307 RepID=A0A8J6LVM3_9PROT)

HSP 1 Score: 199 bits (505), Expect = 6.580e-64
Identity = 91/121 (75.21%), Postives = 110/121 (90.91%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
            MSKTVLI EDNELNMKLF DLLDAHGY+T+QT +G+ ALE+ ++H+PDL+LMDIQLP VSGLEVTKWIKEDDD+  IPVIA+TAFAMKGDE+RI+ GGCEAY++KPI+VS F+ T+K+FLD
Sbjct:    1 MSKTVLIVEDNELNMKLFRDLLDAHGYETLQTREGLQALEMAREHRPDLILMDIQLPEVSGLEVTKWIKEDDDLSSIPVIAVTAFAMKGDEERIRKGGCEAYLSKPITVSTFIETVKQFLD 121          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A3C0MGY3_9PROT (Two-component system response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0MGY3_9PROT)

HSP 1 Score: 198 bits (503), Expect = 1.330e-63
Identity = 91/121 (75.21%), Postives = 110/121 (90.91%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
            M+K +LI EDNELNMKLFHDLLDAHGY+TIQTSDGM AL+L ++H+PDL+LMDIQLP VSGLEVTKW+KEDD +R IPVIA+TAFAMKGDE++I+ GGCEAYI+KPISV+ FL T+++FL 
Sbjct:    1 MAKKILIVEDNELNMKLFHDLLDAHGYQTIQTSDGMAALDLAREHRPDLILMDIQLPEVSGLEVTKWLKEDDTLRAIPVIAVTAFAMKGDEEKIREGGCEAYISKPISVAHFLETVRKFLS 121          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: UPI0003B77519 (response regulator n=2 Tax=Fodinicurvata TaxID=1121829 RepID=UPI0003B77519)

HSP 1 Score: 198 bits (504), Expect = 1.330e-63
Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = 1
Query:    4 SKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
            +KTVL+ EDNELNMKLFHDLL+AHGY  +QT DGM+AL + + HKPDL+LMDIQLP VSGLEVTKWIKEDD++  IPVIA+TAFAMKGDE++I+ GGCEAYIAKPISV+DFL TIKRFL 
Sbjct:   13 AKTVLVVEDNELNMKLFHDLLEAHGYNILQTKDGMEALRMARHHKPDLILMDIQLPEVSGLEVTKWIKEDDELSAIPVIAVTAFAMKGDEEKIREGGCEAYIAKPISVTDFLDTIKRFLS 132          
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A845QAT1_9HYPH (Response regulator n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QAT1_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 1.890e-63
Identity = 91/120 (75.83%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
            MSK VLI EDNELNMKLFHDLLDAHGY+T+QT DGM+ALEL +  +PDL+LMDIQLP VSGLEVTKW+KEDD +R IPV+A+TAFAMKGDE++I+ GGCEAYIAKPISV+ F+ T++RFL
Sbjct:    1 MSKRVLIVEDNELNMKLFHDLLDAHGYETLQTRDGMEALELARSERPDLILMDIQLPEVSGLEVTKWLKEDDTLREIPVVAVTAFAMKGDEEKIRQGGCEAYIAKPISVAQFMETVQRFL 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TX73_9PROT3.420e-7590.08Two-component system response regulator n=1 Tax=Al... [more]
A0A353LRG3_9PROT2.130e-6981.82Two-component system response regulator n=1 Tax=Al... [more]
A0A516H4G5_9PROT3.080e-6576.03Response regulator n=3 Tax=Alphaproteobacteria Tax... [more]
A0A3M1PRM5_9PROT1.840e-6475.83Response regulator n=1 Tax=Alphaproteobacteria bac... [more]
A0A1Y5SS27_9PROT2.290e-6477.50Polar-differentiation response regulator DivK n=2 ... [more]
A0A7Y8SYM6_9PROT4.630e-6475.83Response regulator n=1 Tax=Alphaproteobacteria bac... [more]
A0A8J6LVM3_9PROT6.580e-6475.21Response regulator n=1 Tax=Euryhalocaulis sp. TaxI... [more]
A0A3C0MGY3_9PROT1.330e-6375.21Two-component system response regulator n=1 Tax=Al... [more]
UPI0003B775191.330e-6376.67response regulator n=2 Tax=Fodinicurvata TaxID=112... [more]
A0A845QAT1_9HYPH1.890e-6375.83Response regulator n=1 Tax=Pyruvatibacter mobilis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig876contigP-wetherbeei_contig876:1112..1477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog570967.JMLV01000009_gene1070
PFAMsHpt,PAS_8,Response_reg
Model size366
Max annot lvl204441|Rhodospirillales
KEGG koko:K11443
KEGG Pathwayko02020,ko04112,map02020,map04112
KEGG ModuleM00511
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.66e-65
EggNOG OGsCOG0784@1|root,COG0784@2|Bacteria,1QU3I@1224|Proteobacteria,2TVXW@28211|Alphaproteobacteria,2JYY8@204441|Rhodospirillales
DescriptioncheY-homologous receiver domain
Cds size366
COG categoryT
BRITEko00000,ko00001,ko00002,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187058.455256-CDS-P-wetherbeei_contig876:1111..14771683187058.455256-CDS-P-wetherbeei_contig876:1111..1477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig876 1112..1477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig876.3.1prot_P-wetherbeei_contig876.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig876 1112..1477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig876.3.1

>prot_P-wetherbeei_contig876.3.1 ID=prot_P-wetherbeei_contig876.3.1|Name=mRNA_P-wetherbeei_contig876.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLV
LMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCE
AYIAKPISVSDFLTTIKRFLD*
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mRNA from alignment at P-wetherbeei_contig876:1112..1477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig876.3.1 ID=mRNA_P-wetherbeei_contig876.3.1|Name=mRNA_P-wetherbeei_contig876.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig876:1112..1477+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTAAAACAGTTCTAATTTGCGAAGACAATGAGCTAAACATGAAGCT GTTTCATGATTTGCTCGATGCGCACGGTTACAAAACAATCCAGACCTCGG ATGGTATGGATGCGCTGGAGCTTGTGCAAAAGCATAAGCCGGATCTGGTC CTGATGGATATTCAATTACCCGGGGTTTCCGGTCTTGAAGTAACCAAGTG GATCAAAGAAGACGATGACATCCGGCATATTCCCGTTATCGCCATTACCG CATTTGCCATGAAAGGCGACGAGGACCGGATTAAGGGCGGCGGTTGCGAG GCCTATATCGCAAAACCAATATCCGTTTCGGATTTTCTGACTACTATAAA ACGCTTTCTCGATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig876:1112..1477+

>mRNA_P-wetherbeei_contig876.3.1 ID=mRNA_P-wetherbeei_contig876.3.1|Name=mRNA_P-wetherbeei_contig876.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig876:1112..1477+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTAAAACAGTTCTAATTTGCGAAGACAATGAGCTAAACATGAAGCT
GTTTCATGATTTGCTCGATGCGCACGGTTACAAAACAATCCAGACCTCGG
ATGGTATGGATGCGCTGGAGCTTGTGCAAAAGCATAAGCCGGATCTGGTC
CTGATGGATATTCAATTACCCGGGGTTTCCGGTCTTGAAGTAACCAAGTG
GATCAAAGAAGACGATGACATCCGGCATATTCCCGTTATCGCCATTACCG
CATTTGCCATGAAAGGCGACGAGGACCGGATTAAGGGCGGCGGTTGCGAG
GCCTATATCGCAAAACCAATATCCGTTTCGGATTTTCTGACTACTATAAA
ACGCTTTCTCGATTGA
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