mRNA_P-wetherbeei_contig876.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A3C0TX73_9PROT (Two-component system response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TX73_9PROT) HSP 1 Score: 227 bits (579), Expect = 3.420e-75 Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
MSKTVL+CEDN+LNMKLF DLL+AHGY+TI TSDGMDALEL QKHKPDL+LMDIQLPGVSGLEVTKWIKEDD+IRHIPVIAITAFAMKGDEDRI G GCEAYIAKPISVSDFLTTI+RFLD
Sbjct: 1 MSKTVLVCEDNKLNMKLFLDLLNAHGYQTIPTSDGMDALELAQKHKPDLILMDIQLPGVSGLEVTKWIKEDDNIRHIPVIAITAFAMKGDEDRINGSGCEAYIAKPISVSDFLTTIRRFLD 121
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A353LRG3_9PROT (Two-component system response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LRG3_9PROT) HSP 1 Score: 213 bits (541), Expect = 2.130e-69 Identity = 99/121 (81.82%), Postives = 112/121 (92.56%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
M+K VLICEDNELNMKLFHDLL AHGY+TIQTSDGMDA+EL + H PDL+LMDIQLP VSGLEVTKWIKEDDD+R IPVIA+TAFAMKGDEDRI+ GGC+AYIAKPISV++FL T++RFLD
Sbjct: 1 MAKKVLICEDNELNMKLFHDLLTAHGYETIQTSDGMDAMELARTHHPDLILMDIQLPEVSGLEVTKWIKEDDDLRDIPVIAVTAFAMKGDEDRIRSGGCQAYIAKPISVTEFLETVQRFLD 121
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A516H4G5_9PROT (Response regulator n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H4G5_9PROT) HSP 1 Score: 202 bits (514), Expect = 3.080e-65 Identity = 92/121 (76.03%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
MSKTVLI EDNELNMKLFHDLLDAHGY+T+QT DGM+AL +V+KH+PDL+LMDIQLP VSGLEV KWIKEDD++R IPV+A+TAFAMKGDE++++ GGC+AYIAKPISV F+ T+K+FLD
Sbjct: 1 MSKTVLIVEDNELNMKLFHDLLDAHGYQTLQTKDGMEALAMVRKHRPDLILMDIQLPEVSGLEVIKWIKEDDNLRSIPVVAVTAFAMKGDEEKMREGGCDAYIAKPISVGKFIETVKQFLD 121
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A3M1PRM5_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1PRM5_9PROT) HSP 1 Score: 200 bits (509), Expect = 1.840e-64 Identity = 91/120 (75.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
M+K +LI EDNELNMKLF DLL+AH Y+TIQT DG++AL+L ++HKPDL+LMDIQLP VSGLEVTKWIKEDD++RHIPV+A+TAFAMKGDE++I+ GGCEAYIAKPISV+DFL T++RFL
Sbjct: 1 MTKKILIVEDNELNMKLFSDLLEAHSYETIQTRDGLEALDLAREHKPDLILMDIQLPEVSGLEVTKWIKEDDELRHIPVVAVTAFAMKGDEEKIREGGCEAYIAKPISVTDFLETVRRFL 120
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A1Y5SS27_9PROT (Polar-differentiation response regulator DivK n=2 Tax=Sneathiellaceae TaxID=510685 RepID=A0A1Y5SS27_9PROT) HSP 1 Score: 200 bits (508), Expect = 2.290e-64 Identity = 93/120 (77.50%), Postives = 108/120 (90.00%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
M+KTVLI EDN+LNMKLFHDLLDAHGY T+QT DGM+AL L ++H+PDL+LMDIQLP VSGLEVTKWIKEDDD+R IPVIA+TAFAMKGDE++I+ GGCEAYIAKPISV F+ T+K FL
Sbjct: 1 MTKTVLIVEDNDLNMKLFHDLLDAHGYATLQTKDGMEALSLAREHQPDLILMDIQLPEVSGLEVTKWIKEDDDLRAIPVIAVTAFAMKGDEEKIREGGCEAYIAKPISVGKFIETVKSFL 120
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A7Y8SYM6_9PROT (Response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8SYM6_9PROT) HSP 1 Score: 199 bits (506), Expect = 4.630e-64 Identity = 91/120 (75.83%), Postives = 111/120 (92.50%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
MSKTVLI EDN+LNMKLFHDLLDA+GY+T+QT DG++ALEL + H+PDL+LMDIQLP VSGLEVTKW+KEDD +R IPVIA+TAFAMKGDE++I+ GGCEAY++KPISV++FL T+KRFL
Sbjct: 1 MSKTVLIVEDNDLNMKLFHDLLDANGYRTLQTKDGLEALELARAHRPDLILMDIQLPEVSGLEVTKWLKEDDQLRAIPVIAVTAFAMKGDEEKIREGGCEAYLSKPISVANFLDTVKRFL 120
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A8J6LVM3_9PROT (Response regulator n=1 Tax=Euryhalocaulis sp. TaxID=2744307 RepID=A0A8J6LVM3_9PROT) HSP 1 Score: 199 bits (505), Expect = 6.580e-64 Identity = 91/121 (75.21%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
MSKTVLI EDNELNMKLF DLLDAHGY+T+QT +G+ ALE+ ++H+PDL+LMDIQLP VSGLEVTKWIKEDDD+ IPVIA+TAFAMKGDE+RI+ GGCEAY++KPI+VS F+ T+K+FLD
Sbjct: 1 MSKTVLIVEDNELNMKLFRDLLDAHGYETLQTREGLQALEMAREHRPDLILMDIQLPEVSGLEVTKWIKEDDDLSSIPVIAVTAFAMKGDEERIRKGGCEAYLSKPITVSTFIETVKQFLD 121
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A3C0MGY3_9PROT (Two-component system response regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0MGY3_9PROT) HSP 1 Score: 198 bits (503), Expect = 1.330e-63 Identity = 91/121 (75.21%), Postives = 110/121 (90.91%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
M+K +LI EDNELNMKLFHDLLDAHGY+TIQTSDGM AL+L ++H+PDL+LMDIQLP VSGLEVTKW+KEDD +R IPVIA+TAFAMKGDE++I+ GGCEAYI+KPISV+ FL T+++FL
Sbjct: 1 MAKKILIVEDNELNMKLFHDLLDAHGYQTIQTSDGMAALDLAREHRPDLILMDIQLPEVSGLEVTKWLKEDDTLRAIPVIAVTAFAMKGDEEKIREGGCEAYISKPISVAHFLETVRKFLS 121
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: UPI0003B77519 (response regulator n=2 Tax=Fodinicurvata TaxID=1121829 RepID=UPI0003B77519) HSP 1 Score: 198 bits (504), Expect = 1.330e-63 Identity = 92/120 (76.67%), Postives = 107/120 (89.17%), Query Frame = 1
Query: 4 SKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFLD 363
+KTVL+ EDNELNMKLFHDLL+AHGY +QT DGM+AL + + HKPDL+LMDIQLP VSGLEVTKWIKEDD++ IPVIA+TAFAMKGDE++I+ GGCEAYIAKPISV+DFL TIKRFL
Sbjct: 13 AKTVLVVEDNELNMKLFHDLLEAHGYNILQTKDGMEALRMARHHKPDLILMDIQLPEVSGLEVTKWIKEDDELSAIPVIAVTAFAMKGDEEKIREGGCEAYIAKPISVTDFLDTIKRFLS 132
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Match: A0A845QAT1_9HYPH (Response regulator n=1 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845QAT1_9HYPH) HSP 1 Score: 197 bits (502), Expect = 1.890e-63 Identity = 91/120 (75.83%), Postives = 108/120 (90.00%), Query Frame = 1
Query: 1 MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVLMDIQLPGVSGLEVTKWIKEDDDIRHIPVIAITAFAMKGDEDRIKGGGCEAYIAKPISVSDFLTTIKRFL 360
MSK VLI EDNELNMKLFHDLLDAHGY+T+QT DGM+ALEL + +PDL+LMDIQLP VSGLEVTKW+KEDD +R IPV+A+TAFAMKGDE++I+ GGCEAYIAKPISV+ F+ T++RFL
Sbjct: 1 MSKRVLIVEDNELNMKLFHDLLDAHGYETLQTRDGMEALELARSERPDLILMDIQLPEVSGLEVTKWLKEDDTLREIPVVAVTAFAMKGDEEKIRQGGCEAYIAKPISVAQFMETVQRFL 120 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig876.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig876.3.1 >prot_P-wetherbeei_contig876.3.1 ID=prot_P-wetherbeei_contig876.3.1|Name=mRNA_P-wetherbeei_contig876.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp MSKTVLICEDNELNMKLFHDLLDAHGYKTIQTSDGMDALELVQKHKPDLVback to top mRNA from alignment at P-wetherbeei_contig876:1112..1477+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig876.3.1 ID=mRNA_P-wetherbeei_contig876.3.1|Name=mRNA_P-wetherbeei_contig876.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig876:1112..1477+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig876:1112..1477+ >mRNA_P-wetherbeei_contig876.3.1 ID=mRNA_P-wetherbeei_contig876.3.1|Name=mRNA_P-wetherbeei_contig876.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig876:1112..1477+ (Phaeothamnion wetherbeei SAG_119_79)back to top |