mRNA_P-wetherbeei_contig8744.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8744.1.1
Unique NamemRNA_P-wetherbeei_contig8744.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A6H5JK68_9PHAE (Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK68_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 9.320e-114
Identity = 184/289 (63.67%), Postives = 217/289 (75.09%), Query Frame = 1
Query:    1 DGRMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGFSAGGSEG-----------FSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDKGSE 834
            DG MDIHSGGVDL+FPHHDNE+AQ+EAKYD    QWVNYFLHTGHLHIKGFKMSKSLKNFITIK+AL+E+S RQ+RLL LLHKYN PMDYGDD M+GALA E+ + EFFHNVKAALR+   +D  R +  E  +M S+  A+ EV   LCDDFDTP AM ALQE+V+ VNKY++ KE A  P+V   +R AAEYVT++FK+FG+ S G  +GFS GG  G            SRE  L P+L+VL+EFR+ VR  GRAGD   VLAACD VR+ LLP VGVRLEDKG +
Sbjct:  270 DGTMDIHSGGVDLKFPHHDNEMAQAEAKYDCC--QWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQEHSSRQIRLLFLLHKYNTPMDYGDDAMSGALAAERTFSEFFHNVKAALRRTTARDPARTKEPELTLMSSLSDAKKEVKKCLCDDFDTPGAMGALQELVKKVNKYIEAKERAGEPIVADCVRGAAEYVTKIFKVFGLASPGPALGFSQGGDAGGXXXXXXXXXEASREAILGPVLDVLSEFRDKVRGCGRAGDTKGVLAACDHVREELLPGVGVRLEDKGDQ 556          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A835Z463_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z463_9STRA)

HSP 1 Score: 325 bits (834), Expect = 7.180e-104
Identity = 164/279 (58.78%), Postives = 207/279 (74.19%), Query Frame = 1
Query:    1 DGRMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRAL-QEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGFSAGGSEGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDKGSE 834
            DG MDIHSGGVDLRFPHHDNE+AQ+EA Y+    QWVNYFLHTGHLHIKGFKMSKSLKNFITIK+AL+ ++ RQ+R+  LLHKYN PMDYGD+TM GALA E+ ++EFFH VK+ +R     D LRL   E  + R ++  +  V  ALCDDFDTP A++ L  ++VR VNKY+ +K  A      +V+R A EYVTR+FK+FG+++SG +MGF      G SRE+A+ P+L+ L+ FR  VR   RAGD A V++ACD VRD+ LPP+GVRLEDKG +
Sbjct:  263 DGCMDIHSGGVDLRFPHHDNEIAQAEAHYNCA--QWVNYFLHTGHLHIKGFKMSKSLKNFITIKQALQTHTARQIRMCFLLHKYNDPMDYGDNTMAGALAIERTFVEFFHAVKSVVRAATAVDELRLGEGEIALYRKLEECKSGVRAALCDDFDTPTAIKLLASDLVRTVNKYIQEKTDAGLKSHYIVVRTAGEYVTRIFKVFGLVTSGVDMGFDVEQEGGISREEAMGPVLDALSTFRTQVRTCARAGDSAGVISACDQVRDDALPPLGVRLEDKGDQ 539          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A7S3XKM0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM0_HETAK)

HSP 1 Score: 284 bits (727), Expect = 1.630e-92
Identity = 153/282 (54.26%), Postives = 199/282 (70.57%), Query Frame = 1
Query:   10 MDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGD-EMGFSA-GGSEGFS----REDALAPLLNVLAEFREAVRAGGRAGD---MAAVLAACDDVRDNLLPPVGVRLEDKG 828
            MDIHSGGVDL+FPHHDNE+AQSEA    G  QWVNYF+HTGHLHIKGFKMSKSLKNFITI++AL  ++PRQ+RL+ L+ KYNAPMDYGD TM GAL+ E+ + E+FHNVKA LR+       +  A E  + R++  A+  VH ALCDDFD P A++ LQ++VR  N Y++   A       L++R AA+YVT++F+ FG++  G  ++GF   G +EG      +E+ L+P+L+ L  FR+ VRA  +AG      AVL ACD+VRD  LPP+GVRLED G
Sbjct:   23 MDIHSGGVDLKFPHHDNEMAQSEAH--AGCRQWVNYFVHTGHLHIKGFKMSKSLKNFITIRQALETHTPRQIRLVFLMSKYNAPMDYGDSTMAGALSIERSFAEYFHNVKAVLRRDGVAGPQKWGAREVALGRALSEAKAGVHAALCDDFDCPSALKELQKLVRASNVYLEGNAAP----ATLLVRAAAQYVTKIFRTFGLVPDGGADIGFPVEGAAEGXXXXXXKEEVLSPVLDALVAFRDRVRAAAKAGGDGAARAVLDACDEVRDMALPPLGVRLEDGG 298          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A7S1XX51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX51_9STRA)

HSP 1 Score: 287 bits (735), Expect = 2.610e-92
Identity = 156/282 (55.32%), Postives = 192/282 (68.09%), Query Frame = 1
Query:    1 DGRMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGF-----SAGGSEGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDKGS 831
            DGR+DIHSGGVDL FPHHDNE+AQSEA Y  G  QWVNYF+H+GHLHIKGFKMSKSLKNFITI  AL E S RQ+R L L H+YN PMDYGD TM G L  E+ ++EFFHNVKA LR             E     ++   + +VH ALCDDFDTP  ++ L  +VR+ N Y   K    AP V L+++ +A Y+T+MF++FG++    +MGF     +AGG  G SRE+ L PLL+VL  FRE VRA  R+GD A VL+ACD +RD  L  +GVRLED G+
Sbjct:   12 DGRIDIHSGGVDLVFPHHDNEMAQSEAYY--GCRQWVNYFVHSGHLHIKGFKMSKSLKNFITIGAALEEQSSRQLRFLFLKHRYNQPMDYGDATMQGVLDMERTFVEFFHNVKATLRALPATGPQFWRQKEIAFESALLAIKQQVHDALCDDFDTPTVLQILLRLVRITNVY--SKVFEPAPPVPLIIKESARYITKMFRVFGLVEGDADMGFGSEAGAAGG--GASREETLGPLLDVLTAFREKVRAAARSGDSAEVLSACDALRDVDLVELGVRLEDAGA 287          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A7S1FUV2_9STRA (Cysteine--tRNA ligase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FUV2_9STRA)

HSP 1 Score: 295 bits (754), Expect = 3.700e-92
Identity = 157/277 (56.68%), Postives = 196/277 (70.76%), Query Frame = 1
Query:    4 GRMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGFSAGGSEG---FSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDK 825
            G MDIHSGG+DL+FPHHDNE+AQ+EA+  +G  QWVNYF+H+GHL IK  KMSKSLKNFITI++AL+ N+ RQ+R+L LLHKYNAPMDY DDTM  A   EK +  FF NVK ALR    Q S +    EQ +   +DTA+  V  AL DDFDT  AM ALQ++V+ VNKY++ +  AKA +V LV+R+AA YVT MF++FG+IS+G ++GF     EG    SRED LAP+L+ + EFR   R   R GD   VL  CD  RD +LP +GVRLEDK
Sbjct:  271 GCMDIHSGGIDLKFPHHDNEMAQAEAQ--SGEKQWVNYFVHSGHLSIKERKMSKSLKNFITIRQALQNNTARQIRMLFLLHKYNAPMDYSDDTMAHATVLEKSFSNFFQNVKVALRSSTIQMSQKWTEHEQDLHNDIDTARYAVRKALLDDFDTATAMTALQDLVKAVNKYLETQGPAKA-IVSLVVRKAAVYVTEMFRVFGLISAGTDIGFPLEEGEGAGAVSREDVLAPVLDAVLEFRAGARDAARTGDAKGVLTKCDAFRDAVLPELGVRLEDK 544          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A6U0T1A9_9STRA (Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0T1A9_9STRA)

HSP 1 Score: 291 bits (744), Expect = 1.190e-90
Identity = 150/276 (54.35%), Postives = 201/276 (72.83%), Query Frame = 1
Query:    7 RMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVI--SSGDEMGFSAGGS-EGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDK 825
            RMDIHSGGVDL+FPHHDNE+AQ+EA   +G +QWVNYF+H GHLHIKGFKMSKSLKNFITI++AL  N+ RQ+RL  LLHKYNAPMDYGD+TM+ +L TEK+++EFFHNVKA LR+    +  R + S +++  ++   +  V  AL DDFDTP ++ AL ++V+  N Y+D   A +   V L+LR AA Y+T +F+IFG+I  S+G E+GF  GG+ +    E+AL P+L+ L +FR +VR   R  D   VL+ CD  RD++LP +G+RLEDK
Sbjct:  271 RMDIHSGGVDLKFPHHDNEMAQAEAH--SGCNQWVNYFVHAGHLHIKGFKMSKSLKNFITIRDALENNTARQIRLCFLLHKYNAPMDYGDNTMSHSLVTEKLFVEFFHNVKAVLREGNIINIQRWDESARQLQNTLSDIKSRVDAALRDDFDTPASINALSDLVKATNLYLDSCVARQITPVNLLLRNAAVYITHIFRIFGLIPDSAGGEIGFPIGGAGDAADLEEALTPVLDSLMQFRASVRDFARVKDTGGVLSECDKFRDDVLPVLGIRLEDK 544          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A7S0C423_9STRA (Cysteine--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C423_9STRA)

HSP 1 Score: 287 bits (735), Expect = 5.380e-90
Identity = 152/281 (54.09%), Postives = 202/281 (71.89%), Query Frame = 1
Query:    1 DGRMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAH--QDSLRLEASEQRVMRSVDTA-QDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKA-PMVRLVLRRAAEYVTRMFKIFGVI--SSGDEMGFSAGGSEGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDK 825
            DGRMDIHSGGVDL+FPHHDNE+AQ+EA   +G  QWVNYF+H+GHLHI+G KMSKSLKNFITI++AL  N+ RQ+R   L H+YNAPMDYGD+T+ GA+ TEK ++EFFHNVKAALR       D  +    E+  + +  TA   +V  A  DDFDTP  + AL ++++ +NKY++  E +    ++ LV+RRA  +VT++ K+ G+I  +SG EMGF   G++  +RE+ALAP+L+VL  FR  VR   RA DM  VL ACD+ RD+ LPP+G+RLEDK
Sbjct:  198 DGRMDIHSGGVDLKFPHHDNEMAQAEAH--SGCAQWVNYFVHSGHLHIQGLKMSKSLKNFITIRQALEINTARQIRFCFLKHQYNAPMDYGDNTLRGAMDTEKKFVEFFHNVKAALRNAGGLVSDQAQRWGDEEFALDAATTACMKKVDKAFRDDFDTPGVLTALSDLIKDMNKYLEAVEISDTHKVIALVVRRAGLFVTKILKVLGLIPDNSGVEMGFPFDGTDDVNREEALAPILDVLMSFRSTVRDAARAKDMKGVLTACDEFRDDDLPPLGIRLEDK 476          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A7S1Y9A2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y9A2_9STRA)

HSP 1 Score: 284 bits (727), Expect = 9.150e-90
Identity = 150/275 (54.55%), Postives = 193/275 (70.18%), Query Frame = 1
Query:    7 RMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGFSAGGSEG--FSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDK 825
            RMDIHSGGVDL+FPHHDNE+AQ+EA   +G  QWVNYF+H GHLHIKGFKMSKSLKNFITI++AL +NS RQ+RL  L+HKYN+PMDYGD+TM+ A+  EK++ EFF N KAALR  A +DS +   + + + +++   Q  V  AL DDFDTP  M AL ++V+  N YM D       +  L+L   A YVTR+FK+FG+I + DE+GF  GG+ G   SRE+ L P+L+ L  FR  VR   RA ++  VL  CD  RD+ LP +G+RLEDK
Sbjct:  125 RMDIHSGGVDLKFPHHDNEMAQAEAH--SGCTQWVNYFVHAGHLHIKGFKMSKSLKNFITIRQALEQNSARQIRLCFLMHKYNSPMDYGDNTMSHAMTAEKLFKEFFLNTKAALRATAMKDSKKWTPATKDLQKTLHQTQAAVDVALKDDFDTPAVMSALADLVKSTNSYMQDNVET---INSLLLNNVAAYVTRIFKVFGLIRT-DEIGFDGGGASGGGASREETLTPVLDSLMAFRSNVRDQARAKNVGGVLEECDRFRDDALPELGIRLEDK 393          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A812UK10_SYMMI (Cysteine--tRNA ligase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK10_SYMMI)

HSP 1 Score: 286 bits (732), Expect = 3.730e-89
Identity = 147/279 (52.69%), Postives = 196/279 (70.25%), Query Frame = 1
Query:    4 GRMDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGFS---AGGSEGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDKGS 831
            G +D+H+GGVDL+FPHH+NE+AQSE   D  S QW+NY+LHTGHL+IKGFKMSKSLKNFITI++AL E+S RQ+R   LLHKYNAPMDYGD TMT A+  EKI+ EFFHNVKA LR+        +   +  +M+  +  ++ V  ALCDDFDTP A+  L++++R VNKY++      A     VL   A Y+T + + FG++   +++GFS   +GG    ++E+ LAP L+ L +FRE VR     GD AAVLAA D +RD++LPP+GVR+EDKGS
Sbjct:  252 GHIDVHAGGVDLKFPHHENEIAQSEGCLD--SHQWINYWLHTGHLNIKGFKMSKSLKNFITIRQALEEHSARQIRFCFLLHKYNAPMDYGDGTMTQAVNMEKIFSEFFHNVKATLRRVGVAGPQHVGQRDVALMQFQEATKENVRAALCDDFDTPTAVGHLKDLIREVNKYIESGVVGSA-----VLSSTARYITSVLRTFGLVQDDNDIGFSLESSGGESAGNKEELLAPYLDALTKFRETVRIAAINGDTAAVLAAADCLRDDVLPPLGVRMEDKGS 523          
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Match: A0A7S3L6K9_9STRA (Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6K9_9STRA)

HSP 1 Score: 285 bits (729), Expect = 1.630e-88
Identity = 153/276 (55.43%), Postives = 195/276 (70.65%), Query Frame = 1
Query:   10 MDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKMSKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEKIYMEFFHNVKAALR-KCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDFDTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFGVISSGDEMGFSA--GGSEGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAVLAACDDVRDNLLPPVGVRLEDKG 828
            MDIHSGGVDL+FPHHDNE+AQ+EA  + G  QWVNYF+H GHLHI+G KMSKSLKNFITI++AL  NS RQ+R+L LLHKYNAPMDYGD+T++ A+  EK + EFFHNVKAALR K   +   R   +   + +++   Q +V  AL DDFDTP AM  L ++V+  N Y+   E     +V LV+R  A Y+T+MFK+FG+I + D +GF    G S G  +E+ L+P+L+VL  FR +VR   RAGD  A+L  CD  RD LLPP+GVRLEDKG
Sbjct:  266 MDIHSGGVDLKFPHHDNEMAQAEA--ECGHPQWVNYFVHAGHLHIQGLKMSKSLKNFITIQQALEMNSARQIRMLFLLHKYNAPMDYGDNTLSRAVVAEKSFNEFFHNVKAALRSKDMMEQDQRWTPAAVTLQQTLTDVQAKVGAALRDDFDTPTAMTKLGDLVKATNVYL---ETETTQVVGLVVRSVASYITKMFKVFGLIPN-DSIGFGLEDGSSGGEGKEEILSPVLDVLMAFRSSVREQARAGDTQAILKLCDKFRDELLPPLGVRLEDKG 535          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8744.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK68_9PHAE9.320e-11463.67Cysteine--tRNA ligase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835Z463_9STRA7.180e-10458.78Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S3XKM0_HETAK1.630e-9254.26Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1XX51_9STRA2.610e-9255.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1FUV2_9STRA3.700e-9256.68Cysteine--tRNA ligase n=2 Tax=Corethron hystrix Ta... [more]
A0A6U0T1A9_9STRA1.190e-9054.35Cysteine--tRNA ligase n=1 Tax=Eucampia antarctica ... [more]
A0A7S0C423_9STRA5.380e-9054.09Cysteine--tRNA ligase n=1 Tax=Proboscia inermis Ta... [more]
A0A7S1Y9A2_9STRA9.150e-9054.55Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A812UK10_SYMMI3.730e-8952.69Cysteine--tRNA ligase n=1 Tax=Symbiodinium microad... [more]
A0A7S3L6K9_9STRA1.630e-8855.43Cysteine--tRNA ligase n=1 Tax=Amphora coffeiformis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8744contigP-wetherbeei_contig8744:180..2684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr26346
PFAMstRNA-synt_1e
Model size834
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons6
Evalue7e-88
EggNOG OGsCOG0215@1|root,KOG2007@2759|Eukaryota,2XFI6@2836|Bacillariophyta
EC6.1.1.16
DescriptionDALR_2
Cds size825
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8744.1.1prot_P-wetherbeei_contig8744.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8744 180..2675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187057.4948246-CDS-P-wetherbeei_contig8744:179..3791683187057.4948246-CDS-P-wetherbeei_contig8744:179..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8744 180..379 -
1683187057.505159-CDS-P-wetherbeei_contig8744:704..8251683187057.505159-CDS-P-wetherbeei_contig8744:704..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8744 705..825 -
1683187057.513863-CDS-P-wetherbeei_contig8744:1155..13021683187057.513863-CDS-P-wetherbeei_contig8744:1155..1302Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8744 1156..1302 -
1683187057.5228956-CDS-P-wetherbeei_contig8744:1648..17921683187057.5228956-CDS-P-wetherbeei_contig8744:1648..1792Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8744 1649..1792 -
1683187057.531879-CDS-P-wetherbeei_contig8744:2110..22601683187057.531879-CDS-P-wetherbeei_contig8744:2110..2260Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8744 2111..2260 -
1683187057.5407188-CDS-P-wetherbeei_contig8744:2612..26751683187057.5407188-CDS-P-wetherbeei_contig8744:2612..2675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8744 2613..2675 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187057.5490804-UTR-P-wetherbeei_contig8744:2675..26841683187057.5490804-UTR-P-wetherbeei_contig8744:2675..2684Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8744 2676..2684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8744.1.1

>prot_P-wetherbeei_contig8744.1.1 ID=prot_P-wetherbeei_contig8744.1.1|Name=mRNA_P-wetherbeei_contig8744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
MDIHSGGVDLRFPHHDNELAQSEAKYDTGSDQWVNYFLHTGHLHIKGFKM
SKSLKNFITIKEALRENSPRQVRLLGLLHKYNAPMDYGDDTMTGALATEK
IYMEFFHNVKAALRKCAHQDSLRLEASEQRVMRSVDTAQDEVHTALCDDF
DTPRAMRALQEVVRVVNKYMDDKEAAKAPMVRLVLRRAAEYVTRMFKIFG
VISSGDEMGFSAGGSEGFSREDALAPLLNVLAEFREAVRAGGRAGDMAAV
LAACDDVRDNLLPPVGVRLEDKGSE
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mRNA from alignment at P-wetherbeei_contig8744:180..2684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8744.1.1 ID=mRNA_P-wetherbeei_contig8744.1.1|Name=mRNA_P-wetherbeei_contig8744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2505bp|location=Sequence derived from alignment at P-wetherbeei_contig8744:180..2684- (Phaeothamnion wetherbeei SAG_119_79)
GACGGCCGGATGGACATCCACTCGGGCGGCGTCGACCTCCGCTTCCCGCA CCACGACAACGAGCTCGCGCAGGTGTGGGTGTGTTGCTGGCGGTTTGTTA GCGGTTTGGTATGCCTGCCGGCTGTCTGGATTGCTGTCCTTTCCGGACGT CGCGATAGTTCTCTGGACCGATTAGATTTTCTTCTGCTCGTTGTGCGTGT GATGGTTGCGGTAGCAAGGTCGCACGAACAGTGGGTTGGTGTTTTAAATG GAAAGTTGTGATAATCTCTGTGTGCCTCGTGTTGCCTTTGCGTACCGTCA TTAATTGTGTCAGTTGTGTCGCTGTTGCCGCGTCTTCTCCACGCGGGCCT TCCATCTCCGCTTCCTTCTCATCTTCGTTGACGGTGCTGTTGTTCGTTTC TGTGACTGCCCCAAACGGTACCAGTCCGAGGCAAAGTACGACACGGGGAG CGACCAGTGGGTGAACTACTTCCTGCACACGGGCCATCTCCACATCAAGG GCTTCAAGATGAGCAAGAGCCTCAAAAACTTCATCACCATCAAAGAAGCC CTCCGTGAGAACTCCCCGCGCCAGGTCAGCCAAGCCAGACAGCCCAGCCT GTCAGGAAAGAAGAAGGAAACTAAAATCGCCGTTGAAACCGCCGCTTGCC GCAGAAACCGCCGGCCGAAAGGGTGGGCGCCAGAAACAAACGCCGGACGC GCCGCCGCGGGAACAGCTCTTAAATCCGAGTAGTGGCCTTCTAAACTGCT ATAAAACGAGATGAAGAGTATGTGGAAGAGGAAGGACACTCCCCGGCGTC TTTGAGTGCGGTCATAAAGTCCTGAGGGTGTGCATTTGGCATCCTGCCTA AAACTTACGTTTCAACCCTCTTGTGATGGCGGCACGGACCAGGTGCGGCT GCTCGGGCTGTTGCACAAGTACAATGCCCCGATGGACTACGGAGACGACA CTATGACGGGGGCGCTGGCGACGGAGAAGATCTACATGGAGTTCTTCCAC AACGTCAAAGCCGCGCTCCGCAAGTGCGCCCATCAGGTGCGTCAATGTGT CTCTTTCCGTCATCTTCCTTCCGTTCCTTTTCTGCTCGACATCGTATTCG TGCTTTGAAAGGTTGTTCGGCGCGAAAGGAATGGAAGGCGGTCTTCTTGA CTCTCCCCGCTTTTCGTGCTTTTTCTGTTTTATTCGGGATACGTCCCCGG AGCCGTCCTTGACGATACTGTGTGGCGTTAGCACAGCGCTCAATGTCGAA AGCCATCCCTTTGCCCTGTTTCGTCCTCCCATTCCCGCCTATCCCAACCA TGGAGAAACAAACGCAACTTGCCGCGGAAAACACACACATGCACACAAAT ACAATGTGACGCGGGGGAATTCCCGCCCACAGGACTCGCTGCGGCTGGAG GCGTCGGAGCAGCGGGTGATGCGTAGCGTGGACACGGCGCAGGACGAGGT GCACACGGCGCTCTGCGACGACTTCGACACCCCGCGGGCCATGCGCGCCC TCCAGGAGGTCGTCAGAGTCGTCAACAAGGTGCCACAATTTATTCCCGGT CTTTTCGGGTGGGGCAGGCAGTCTTTGATGTCGGCATCGGGTTTAGGTTA GATCGGTGTGCGGCGGTCGGTTTGGATTTCTCTCGTTGCCCGGTTCTGAA AGACGTCCGATTCGCCGATCCCGGCTATTTTATTTTGTCCTGCTGGGGCT GTATGGGGGACCAAGGTTCGGAACGGGTGTCGTCCCTCCTTCTCTTCTTA TTACGTTTTCTTTTTCTTTTATCATTTTCTGCGTCTCATCCGTATTTTCT GGGCCCTTTCTTTCTTCCATTGCCTTCCGATGCCTTTCTGGCGCATCCGA TGTGCGCAGTATATGGACGACAAAGAAGCGGCGAAGGCGCCCATGGTGCG GCTGGTGTTGCGGCGGGCGGCGGAGTACGTCACCCGCATGTTCAAAATCT TCGGAGTTATATCCTCCGGCGACGAGATGGGTGGGCCCTTCCTTCGCTTG AATCTATGGATTTTGTTGAATCCCCGCCTTTGATCAGCGGCGTGGACTCC GCTGTTCCATTTCTTGGCTTGGAGCGGCGGTATAGAACGCCTTCTCGTGT GTACTGCAGCTTCTTCTCCCCGCTCGTCCTTTTTCCCTGGTCACAATTAC CTTCATTTCGAGTCTGAGGGGAACCCCGTTCTTTCTCCCACTGACTCGCG CACTCTCGGCGATGCAACCACACCTCTCGCGGGCGCCACCGCCGCCGCCG CTGCTAACTGCACTCTGTCTTGGTACCTCTCTCTGTCCCCTCCTGCACCC TGCAGGCTTCTCTGCGGGCGGGAGCGAAGGCTTCTCGCGGGAGGACGCCC TGGCGCCGCTCCTCAACGTGCTGGCGGAGTTTCGCGAGGCGGTGCGCGCC GGCGGGCGGGCGGGCGACATGGCGGCCGTCCTGGCGGCGTGCGACGACGT CCGCGACAACCTGCTGCCGCCCGTCGGGGTCCGTCTCGAGGATAAGGGCT CCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8744:180..2684-

>mRNA_P-wetherbeei_contig8744.1.1 ID=mRNA_P-wetherbeei_contig8744.1.1|Name=mRNA_P-wetherbeei_contig8744.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig8744:180..2684- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACATCCACTCGGGCGGCGTCGACCTCCGCTTCCCGCACCACGACAA
CGAGCTCGCGCAGTCCGAGGCAAAGTACGACACGGGGAGCGACCAGTGGG
TGAACTACTTCCTGCACACGGGCCATCTCCACATCAAGGGCTTCAAGATG
AGCAAGAGCCTCAAAAACTTCATCACCATCAAAGAAGCCCTCCGTGAGAA
CTCCCCGCGCCAGGTGCGGCTGCTCGGGCTGTTGCACAAGTACAATGCCC
CGATGGACTACGGAGACGACACTATGACGGGGGCGCTGGCGACGGAGAAG
ATCTACATGGAGTTCTTCCACAACGTCAAAGCCGCGCTCCGCAAGTGCGC
CCATCAGGACTCGCTGCGGCTGGAGGCGTCGGAGCAGCGGGTGATGCGTA
GCGTGGACACGGCGCAGGACGAGGTGCACACGGCGCTCTGCGACGACTTC
GACACCCCGCGGGCCATGCGCGCCCTCCAGGAGGTCGTCAGAGTCGTCAA
CAAGTATATGGACGACAAAGAAGCGGCGAAGGCGCCCATGGTGCGGCTGG
TGTTGCGGCGGGCGGCGGAGTACGTCACCCGCATGTTCAAAATCTTCGGA
GTTATATCCTCCGGCGACGAGATGGGCTTCTCTGCGGGCGGGAGCGAAGG
CTTCTCGCGGGAGGACGCCCTGGCGCCGCTCCTCAACGTGCTGGCGGAGT
TTCGCGAGGCGGTGCGCGCCGGCGGGCGGGCGGGCGACATGGCGGCCGTC
CTGGCGGCGTGCGACGACGTCCGCGACAACCTGCTGCCGCCCGTCGGGGT
CCGTCTCGAGGATAAGGGCTCCGAG
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