mRNA_P-wetherbeei_contig873.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig873.4.1
Unique NamemRNA_P-wetherbeei_contig873.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig873.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig873contigP-wetherbeei_contig873:2829..3724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size896
Hectar predicted targeting categoryother localisation
Exons1
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187056.7697146-UTR-P-wetherbeei_contig873:2828..28461683187056.7697146-UTR-P-wetherbeei_contig873:2828..2846Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig873 2829..2846 -
1683187056.7942603-UTR-P-wetherbeei_contig873:3668..37241683187056.7942603-UTR-P-wetherbeei_contig873:3668..3724Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig873 3669..3724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187056.7830465-CDS-P-wetherbeei_contig873:2846..36681683187056.7830465-CDS-P-wetherbeei_contig873:2846..3668Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig873 2847..3668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig873.4.1prot_P-wetherbeei_contig873.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig873 2847..3668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig873.4.1

>prot_P-wetherbeei_contig873.4.1 ID=prot_P-wetherbeei_contig873.4.1|Name=mRNA_P-wetherbeei_contig873.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MYADDLELLKLQLYRFLARGTVRFLLGLQRASVGPPGLFGAGGGGGAGGG
SDESDGGGGIKSNGAVGSDVVWGGASSGAPAGAAGAGATPASQFTDPERL
YTRRFRALTALSTPPLADYADFQTSIAFPSLTAEELLQDAADAFRACTPV
IERARTTAAAAVSRAAAAAAAEKERMAMLARAHVGAPGDEPKLRQTLPEA
EGSPVGGADCVATVEELTALAKVGVANGVSLMRVRKALVGNSGGGDIGAR
RAAKLRFGFGTHYDFPIVTVEWP*
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mRNA from alignment at P-wetherbeei_contig873:2829..3724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig873.4.1 ID=mRNA_P-wetherbeei_contig873.4.1|Name=mRNA_P-wetherbeei_contig873.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=896bp|location=Sequence derived from alignment at P-wetherbeei_contig873:2829..3724- (Phaeothamnion wetherbeei SAG_119_79)
CCACAGCCCGCGCCGCGTCCGGCGGCCGCGCGCTGGCTCCGAACGAGGCC
GCGGAAATGTATGCCGACGACCTCGAGCTGCTGAAACTGCAGCTGTACCG
CTTCCTAGCGCGGGGCACGGTCCGCTTCTTGCTCGGCCTGCAACGGGCCA
GCGTCGGGCCGCCGGGGCTGTTCGGCGCTGGTGGCGGCGGCGGCGCTGGC
GGCGGCAGCGATGAGAGCGACGGCGGCGGCGGTATCAAGAGCAATGGCGC
TGTTGGCAGTGACGTTGTTTGGGGCGGCGCTTCCAGTGGTGCCCCCGCTG
GTGCCGCCGGTGCCGGCGCCACGCCCGCGTCCCAGTTCACTGACCCGGAG
AGGCTGTATACGCGGCGCTTCCGCGCGCTGACGGCGCTGTCCACGCCGCC
GCTGGCGGACTATGCGGACTTTCAGACCAGCATCGCCTTCCCATCGTTGA
CGGCCGAGGAACTCCTCCAGGACGCCGCCGACGCCTTTCGCGCCTGCACG
CCGGTGATCGAGCGCGCGCGGACGACGGCGGCTGCCGCGGTGTCGAGGGC
GGCGGCGGCGGCGGCAGCGGAGAAGGAGAGGATGGCGATGCTGGCCAGGG
CACATGTTGGTGCGCCGGGCGACGAGCCAAAGCTTCGGCAGACGCTGCCG
GAGGCGGAAGGTTCGCCGGTCGGCGGTGCGGACTGCGTGGCGACGGTCGA
AGAGTTGACAGCGCTGGCAAAGGTCGGTGTTGCCAACGGCGTCTCCCTCA
TGCGCGTCCGGAAGGCTCTCGTGGGCAACAGCGGCGGCGGCGATATTGGC
GCCCGTCGGGCGGCAAAGCTGCGCTTCGGCTTTGGGACGCACTATGATTT
TCCCATCGTGACAGTTGAGTGGCCTTGAAATGTCGACTTTCGTGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig873:2829..3724-

>mRNA_P-wetherbeei_contig873.4.1 ID=mRNA_P-wetherbeei_contig873.4.1|Name=mRNA_P-wetherbeei_contig873.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig873:2829..3724- (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGCCGACGACCTCGAGCTGCTGAAACTGCAGCTGTACCGCTTCCT
AGCGCGGGGCACGGTCCGCTTCTTGCTCGGCCTGCAACGGGCCAGCGTCG
GGCCGCCGGGGCTGTTCGGCGCTGGTGGCGGCGGCGGCGCTGGCGGCGGC
AGCGATGAGAGCGACGGCGGCGGCGGTATCAAGAGCAATGGCGCTGTTGG
CAGTGACGTTGTTTGGGGCGGCGCTTCCAGTGGTGCCCCCGCTGGTGCCG
CCGGTGCCGGCGCCACGCCCGCGTCCCAGTTCACTGACCCGGAGAGGCTG
TATACGCGGCGCTTCCGCGCGCTGACGGCGCTGTCCACGCCGCCGCTGGC
GGACTATGCGGACTTTCAGACCAGCATCGCCTTCCCATCGTTGACGGCCG
AGGAACTCCTCCAGGACGCCGCCGACGCCTTTCGCGCCTGCACGCCGGTG
ATCGAGCGCGCGCGGACGACGGCGGCTGCCGCGGTGTCGAGGGCGGCGGC
GGCGGCGGCAGCGGAGAAGGAGAGGATGGCGATGCTGGCCAGGGCACATG
TTGGTGCGCCGGGCGACGAGCCAAAGCTTCGGCAGACGCTGCCGGAGGCG
GAAGGTTCGCCGGTCGGCGGTGCGGACTGCGTGGCGACGGTCGAAGAGTT
GACAGCGCTGGCAAAGGTCGGTGTTGCCAACGGCGTCTCCCTCATGCGCG
TCCGGAAGGCTCTCGTGGGCAACAGCGGCGGCGGCGATATTGGCGCCCGT
CGGGCGGCAAAGCTGCGCTTCGGCTTTGGGACGCACTATGATTTTCCCAT
CGTGACAGTTGAGTGGCCTTGA
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