mRNA_P-wetherbeei_contig8722.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8722.2.1
Unique NamemRNA_P-wetherbeei_contig8722.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8722.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8722contigP-wetherbeei_contig8722:1732..2494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size765
Hectar predicted targeting categoryother localisation
Exons1
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187056.1545563-UTR-P-wetherbeei_contig8722:1731..17381683187056.1545563-UTR-P-wetherbeei_contig8722:1731..1738Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8722 1732..1738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187056.176115-CDS-P-wetherbeei_contig8722:1738..24941683187056.176115-CDS-P-wetherbeei_contig8722:1738..2494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8722 1739..2494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8722.2.1prot_P-wetherbeei_contig8722.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8722 1739..2494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8722.2.1

>prot_P-wetherbeei_contig8722.2.1 ID=prot_P-wetherbeei_contig8722.2.1|Name=mRNA_P-wetherbeei_contig8722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=252bp
MNQMQTPVTKPQQQKRSFGGRSGNPPRAYVPRFTSRSSQDVRTALTPPKP
VQHDALQQIPPPVVDEVPLQPDSQDSTPSPESRVKGDEIQTSVEPEEAEG
TAPAPIKEEADAGDAVTIKPASADEPTSASTAASTTPAKASAPAPAVVTP
TAAAAPAPKEAEPARPQAPHQQPQQLQAAKGPLPKPSVPTPPQQLRSPMV
QPQQQPALAPPQQQQQQQPHHSPHQPSHHSPHQPPHQSPHHPHGQHHGQP
PH
back to top

mRNA from alignment at P-wetherbeei_contig8722:1732..2494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8722.2.1 ID=mRNA_P-wetherbeei_contig8722.2.1|Name=mRNA_P-wetherbeei_contig8722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=763bp|location=Sequence derived from alignment at P-wetherbeei_contig8722:1732..2494+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGATGAACCAAATGCAAACCCCTGTCACCAAACCGCAGCAACAAA
AAAGGTCTTTTGGAGGAAGGAGCGGCAATCCTCCTCGGGCATACGTCCCA
CGGTTTACTTCACGTTCCAGTCAGGACGTGAGGACGGCGCTCACGCCGCC
CAAGCCAGTGCAACATGACGCGCTCCAACAGATTCCGCCTCCCGTCGTCG
ATGAAGTGCCACTGCAACCTGATTCTCAGGATTCGACGCCTTCGCCGGAG
TCTCGCGTCAAGGGCGACGAGATCCAAACAAGCGTGGAGCCGGAGGAGGC
GGAAGGCACCGCGCCGGCGCCAATAAAAGAAGAAGCTGACGCTGGCGACG
CGGTGACGATCAAGCCAGCCTCTGCCGACGAGCCGACGTCCGCGTCAACC
GCCGCGTCCACAACTCCGGCCAAGGCGTCCGCTCCGGCGCCGGCCGTGGT
GACGCCTACGGCAGCGGCTGCTCCGGCGCCGAAGGAAGCCGAGCCGGCGC
GTCCACAGGCGCCACACCAGCAGCCGCAGCAGCTGCAGGCGGCGAAAGGA
CCCCTGCCAAAGCCCTCGGTGCCGACGCCGCCGCAGCAGCTGCGATCGCC
GATGGTGCAGCCTCAGCAGCAGCCCGCATTAGCACCGCCGCAGCAGCAAC
AGCAGCAGCAGCCGCATCACTCGCCGCACCAGCCGTCGCACCACTCGCCA
CATCAGCCGCCGCACCAGTCGCCGCACCATCCGCACGGACAGCACCACGG
CCAGCCGCCGCAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8722:1732..2494+

>mRNA_P-wetherbeei_contig8722.2.1 ID=mRNA_P-wetherbeei_contig8722.2.1|Name=mRNA_P-wetherbeei_contig8722.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig8722:1732..2494+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCAAATGCAAACCCCTGTCACCAAACCGCAGCAACAAAAAAGGTC
TTTTGGAGGAAGGAGCGGCAATCCTCCTCGGGCATACGTCCCACGGTTTA
CTTCACGTTCCAGTCAGGACGTGAGGACGGCGCTCACGCCGCCCAAGCCA
GTGCAACATGACGCGCTCCAACAGATTCCGCCTCCCGTCGTCGATGAAGT
GCCACTGCAACCTGATTCTCAGGATTCGACGCCTTCGCCGGAGTCTCGCG
TCAAGGGCGACGAGATCCAAACAAGCGTGGAGCCGGAGGAGGCGGAAGGC
ACCGCGCCGGCGCCAATAAAAGAAGAAGCTGACGCTGGCGACGCGGTGAC
GATCAAGCCAGCCTCTGCCGACGAGCCGACGTCCGCGTCAACCGCCGCGT
CCACAACTCCGGCCAAGGCGTCCGCTCCGGCGCCGGCCGTGGTGACGCCT
ACGGCAGCGGCTGCTCCGGCGCCGAAGGAAGCCGAGCCGGCGCGTCCACA
GGCGCCACACCAGCAGCCGCAGCAGCTGCAGGCGGCGAAAGGACCCCTGC
CAAAGCCCTCGGTGCCGACGCCGCCGCAGCAGCTGCGATCGCCGATGGTG
CAGCCTCAGCAGCAGCCCGCATTAGCACCGCCGCAGCAGCAACAGCAGCA
GCAGCCGCATCACTCGCCGCACCAGCCGTCGCACCACTCGCCACATCAGC
CGCCGCACCAGTCGCCGCACCATCCGCACGGACAGCACCACGGCCAGCCG
CCGCAT
back to top