mRNA_P-wetherbeei_contig8722.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: T1NJ96_TRIUA (Uncharacterized protein n=1 Tax=Triticum urartu TaxID=4572 RepID=T1NJ96_TRIUA) HSP 1 Score: 81.3 bits (199), Expect = 2.520e-17 Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 22 KVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGE 240
++RV Y GNRE+ G L P QV PT+R+ G RRG YTL+MVDPD PSP +P E+LHWMV ++P G+
Sbjct: 21 QLRVMY-GNREITNGSELRPSQVENQPTVRITG-RRGSLYTLVMVDPDVPSPTNPSQREYLHWMVTDIPDGGD 91
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: A0A2X0SCW7_WHEAT (Genome assembly, chromosome: II n=19 Tax=Triticeae TaxID=147389 RepID=A0A2X0SCW7_WHEAT) HSP 1 Score: 80.1 bits (196), Expect = 5.230e-17 Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 22 KVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGE 240
++RV Y GNRE+ G L P QV PT+R+ G RRG YTL+MVDPD PSP +P E+LHWMV ++P G+
Sbjct: 25 QLRVMY-GNREITNGFELRPSQVENQPTVRITG-RRGSLYTLVMVDPDVPSPTNPSQREYLHWMVTDIPDGGD 95
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: A0A2G5E1B9_AQUCA (Uncharacterized protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5E1B9_AQUCA) HSP 1 Score: 79.0 bits (193), Expect = 1.470e-16 Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 1 DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGEGT 246
DS + VK+ VTY N++V G LMP + P +++ G YTL+M DPDAPSP DP E LHW+V N+PG + +
Sbjct: 19 DSFTPSVKLEVTYNSNKQVYNGHELMPATITAKPRVQIGGDDMRSTYTLVMTDPDAPSPSDPHLREHLHWLVTNIPGTTDAS 100
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: A0A6A3C3J6_HIBSY (Protein BROTHER of FT and TFL 1 n=3 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C3J6_HIBSY) HSP 1 Score: 78.2 bits (191), Expect = 3.000e-16 Identity = 37/82 (45.12%), Postives = 48/82 (58.54%), Query Frame = 1
Query: 1 DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGEGT 246
D S VK+ VTY N++V G LMP + P + + G YTL+MVDPDAPSP DP E LHWMV ++PG + +
Sbjct: 19 DIFSPTVKMTVTYNSNKQVANGHELMPAVIAARPRVEISGDDMRPCYTLIMVDPDAPSPSDPYLREHLHWMVTDIPGTTDAS 100
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: M1B4W4_SOLTU (CEN 1 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1B4W4_SOLTU) HSP 1 Score: 76.6 bits (187), Expect = 3.710e-16 Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 1 DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPG 231
DS S VK++V Y G+++V G +MP V P + + G YTL+M DPDAPSP DP E LHW+V ++PG
Sbjct: 21 DSFSPSVKMKVIYNGSKQVSNGHEIMPAVVATQPRVEIGGEDMRSAYTLIMTDPDAPSPSDPYLREHLHWIVTDIPG 97
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: A0A835IFU6_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IFU6_9MAGN) HSP 1 Score: 77.0 bits (188), Expect = 8.420e-16 Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 1 DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGEGT 246
DS VK+ VTY N +V G LMP + P + + G YTL+M DPDAPSP DP E LHW+V N+PG + +
Sbjct: 19 DSFIPSVKLEVTYNSNTQVYNGHELMPSAITAKPRVEIGGDSMRSTYTLIMTDPDAPSPSDPHLREHLHWLVTNIPGTTDAS 100
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: I1ITG1_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1ITG1_BRADI) HSP 1 Score: 76.6 bits (187), Expect = 1.140e-15 Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 22 KVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGE 240
++RV Y GNRE+ G L P QV PT+++ G G YTL+MVDPDAPSP DP E+LHW+V ++P G+
Sbjct: 24 RLRVLY-GNREITNGSELRPSQVVNQPTVQITGLS-GSFYTLVMVDPDAPSPSDPSEREYLHWLVTDIPDGGD 94
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: M1B4W5_SOLTU (CEN 1 n=3 Tax=Solanum TaxID=4107 RepID=M1B4W5_SOLTU) HSP 1 Score: 76.6 bits (187), Expect = 1.210e-15 Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 1 DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPG 231
DS S VK++V Y G+++V G +MP V P + + G YTL+M DPDAPSP DP E LHW+V ++PG
Sbjct: 21 DSFSPSVKMKVIYNGSKQVSNGHEIMPAVVATQPRVEIGGEDMRSAYTLIMTDPDAPSPSDPYLREHLHWIVTDIPG 97
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: F8T7T0_MEDTR (FTa1 n=16 Tax=IRL clade TaxID=2233839 RepID=F8T7T0_MEDTR) HSP 1 Score: 76.6 bits (187), Expect = 1.240e-15 Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGEGT 246
DS + + +RVTY GNR+V G L P Q+ P + + G YTL+MVDPD+PSP +P E+LHW+V ++PG E T
Sbjct: 20 DSFENSIPLRVTY-GNRDVNNGCELKPSQIGNQPRVSVGGNDLRNLYTLVMVDPDSPSPSNPTFKEYLHWLVTDIPGTTEVT 100
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Match: A0A3B6CDW8_WHEAT (Uncharacterized protein n=8 Tax=Triticeae TaxID=147389 RepID=A0A3B6CDW8_WHEAT) HSP 1 Score: 76.3 bits (186), Expect = 1.610e-15 Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 22 KVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLMVDPDAPSPQDPVAAEWLHWMVVNMPGEGE 240
++RV Y+ NRE+ G L P QV PT+++ G R G YTL+MVDPD PSP DP E+LHW+V ++P G+
Sbjct: 24 RLRVLYS-NREITNGSELRPSQVANQPTVQITG-RPGSLYTLVMVDPDVPSPSDPSQREYLHWLVTDIPERGD 94 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8722.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig8722.1.1 >prot_P-wetherbeei_contig8722.1.1 ID=prot_P-wetherbeei_contig8722.1.1|Name=mRNA_P-wetherbeei_contig8722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp DSVSDDVKVRVTYAGNREVEEGERLMPPQVHGMPTLRLEGTRRGEKYTLLback to top mRNA from alignment at P-wetherbeei_contig8722:631..1075- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig8722.1.1 ID=mRNA_P-wetherbeei_contig8722.1.1|Name=mRNA_P-wetherbeei_contig8722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=445bp|location=Sequence derived from alignment at P-wetherbeei_contig8722:631..1075- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig8722:631..1075- >mRNA_P-wetherbeei_contig8722.1.1 ID=mRNA_P-wetherbeei_contig8722.1.1|Name=mRNA_P-wetherbeei_contig8722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig8722:631..1075- (Phaeothamnion wetherbeei SAG_119_79)back to top |