mRNA_P-wetherbeei_contig872.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig872.1.2
Unique NamemRNA_P-wetherbeei_contig872.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A836CKG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKG8_9STRA)

HSP 1 Score: 306 bits (785), Expect = 8.500e-94
Identity = 153/245 (62.45%), Postives = 191/245 (77.96%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSA--DYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADRPYESE 1046
            VNELL PD+L+RQRHVL+PDEAFG IFQLDVLTDVAEGLL+PAWA VAKEY K  P + + QR++GMLPE A++R+FRWTQ+FAEA+K  + +AM +  ++A  +Y  K L G   WLE+L    +PCA VS  P+ VV+  +  +GL PY++AQV+AED+FERD   FLKA+LK++R P+KCAVFDCRPAGM+QAHEAD +GVA VG+ PVYEL VAD  T  L +L V NVRRLF+DR YESE
Sbjct:  127 VNELLEPDYLERQRHVLKPDEAFGAIFQLDVLTDVAEGLLQPAWAEVAKEYKKSTPTVAECQRALGMLPETAIMREFRWTQDFAEARKMSIAFAMTLQEVAAKGEYSAKPLVGVLAWLERLQVAGVPCAAVSRFPSVVVDRALQESGLTPYVSAQVSAEDDFERDLQGFLKATLKINRPPSKCAVFDCRPAGMIQAHEADFKGVATVGLHPVYELGVADLLTPSLADLHVQNVRRLFSDRSYESE 371          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A2V3ILH4_9FLOR (5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILH4_9FLOR)

HSP 1 Score: 162 bits (411), Expect = 1.560e-40
Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 3
Query:  315 QVNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQ--VAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADRPYE 1040
            ++NE L P HL R RHVL PDE F  +F  D +   A  L R AW  VA E   P PDL  + R+  M+PE AV R F W  ++++ K+FV   A V   +   +      G  +WL  L    + C + S          +   GL PY T+   V +ED F+     FL A++K  R P+KC VF  RP G+  AHE   + VAL+GV+  YE+  AD T    ++L+VYN+RRLF+++  E
Sbjct:  119 ELNESLRPSHLQRHRHVLAPDEQFAAVFMWDTIVANARELERSAWITVATENNLPEPDLDDIVRAEQMVPEAAVQRAFYWRSDWSDIKRFVFRKAEVFDTLREAFDFHQREGVSEWLRSLTQYGIKCILCSPHSRQFALQVIERIGLEPYFTSNDIVTSEDEFDSLEQMFLLAAVKAQRPPSKCVVFTDRPTGVTAAHEVSAKVVALLGVYAAYEVKTADQTVAHYEDLVVYNIRRLFSEQGAE 362          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A6H5JLE3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE3_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 9.970e-39
Identity = 95/266 (35.71%), Postives = 141/266 (53.01%), Query Frame = 3
Query:  273 DHFTTPFKLPPICRQVNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQ--VAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADRPYESESGGMQL 1064
            D F TP +       +NE++ P+++ R ++   PD ++G +FQLD L DV  GL+ PAW  VA+   +  P L  V+R  G  PE   LR+F W     E +  +  Y   + R +  Y+P VL                    S LP+A+V+A +    L+ Y   Q  V AED    D   ++ A+LK+ R+  KC  FDCRP GM++AH+AD+RGV  +GV   +EL ++D +    D++ V N R++FADR  E E G +QL
Sbjct:  315 DPFLTPGR-------INEIMDPNNIQRHQYNTNPDSSYGAVFQLDTLVDVIPGLIYPAWLEVARALNQNAPTLHTVERGYGWTPEQMFLREFNWRLTQEELEGGLEIYERTILRQALKYQPTVL--------------------SRLPSAIVDAVLEKTELSGYFEDQHRVTAEDEPYDDYRGYMLAALKIQRSTMKCCAFDCRPEGMIKAHDADLRGVCRIGVMAAWELRLSDLSVESFDDMNVLNFRQIFADR--EFEPGMLQL 551          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A7S1EUI5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUI5_9RHOD)

HSP 1 Score: 145 bits (366), Expect = 1.440e-35
Identity = 85/238 (35.71%), Postives = 123/238 (51.68%), Query Frame = 3
Query:  327 LLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADRPYE 1040
            +  PD+L+R R +L PDEAFG IF    L   A  L   AW  VA E      DL  + R+  M PE AV R F WT ++ E K+ V     V      +YK ++ P  ++WL  L        + S++    +   +    +A Y    V+ E+ F+ +   FL A +KL R P KC +F   P  ++ AHE   + +AL GVF  YEL VADAT    D+++VY++R+LF++  YE
Sbjct:    1 IFRPDYLERHRFILAPDEAFGAIFTWSSLLQNARDLEMDAWNIVATENNLLKVDLDDIVRAEQMNPELAVQRVFLWTSDWIEVKRLVFRKLEVYNEFFDEYKFELRPNVKQWLTVLRKYKTSMCICSNVQRNRMKMILERLEIAEYFPFIVSIEEEFDTEEQMFLSACVKLERPPQKCVIFTDTPTSIISAHEISAKAIALSGVFKAYELRVADATMSNFDDIVVYDIRKLFSESGYE 238          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A7V5I600_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I600_9BACT)

HSP 1 Score: 142 bits (357), Expect = 1.650e-33
Identity = 84/239 (35.15%), Postives = 127/239 (53.14%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLD-VLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADR 1031
            +NE   PD+  R R +L+P+EAF  IF+L+ VL+  A  +   +W  +A+E  K  PD   VQ++  + PE  V    RWT ++ E +  V     +        + +   G  +WLE L   ++PCAV S L    V   +   G+A +   ++ AE   E      L A +K+ RAP KC V++  P G++ AHE   + + LVG+FP ++L +AD T    D+L V NVRRLFAD+
Sbjct:   92 LNERFRPDYWQRLRVILQPEEAFANIFKLEGVLSANAHAIEYASWKQLAEELDKEPPDEDIVQQTYHLRPERIVQGVLRWTDSWREVRGIVYRQQEIYRERFLAEQHRPTRGLLRWLELLQRYDMPCAVYSRLDRVSVEKALTDMGVADFFKERITAESEVETAIQFLLVACVKMQRAPQKCVVYEDTPKGILAAHEVFSKAIGLVGLFPAFDLRLADLTVEDFDDLRVMNVRRLFADQ 330          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A2P6TFZ2_CHLSO (Pseudouridine-5-monophosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFZ2_CHLSO)

HSP 1 Score: 140 bits (354), Expect = 7.810e-33
Identity = 88/241 (36.51%), Postives = 123/241 (51.04%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADRPYE 1040
            +NE L     DR RH +RPDEAFG IFQ D +      L R AW  VA+    P P + + Q    M PE A +    WT++   A++     A   A++  D   + L G  +WL+ +    +P A+V+ +     +A +   GL  Y T  V A+D+ E  A  FL A++KL R P  C VF   P  +  AH   M+ VA++G  P + L  AD T   L +L VYN+RRLFA+R  E
Sbjct:  109 LNEQLKVQGPDRLRHSMRPDEAFGLIFQFDNVVANTRELQRAAWKAVAEAEELPFPSMERPQL-YDMRPERAAMDVLMWTRDMKRAQELAWLVATEYAKLLMDLG-EPLEGVAEWLQLMSKTRVPSALVTTMDRHTTDALLERLGLRHYFTCTVTADDDMETIAQRFLSAAIKLGRPPDHCVVFAACPTAVTAAHNCTMKAVAVMGTHPAFSLKNADLTCASLQQLSVYNIRRLFANRGSE 347          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: M1VFT4_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VFT4_CYAM1)

HSP 1 Score: 141 bits (355), Expect = 2.700e-32
Identity = 84/239 (35.15%), Postives = 126/239 (52.72%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLD-VLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADR 1031
            +NE   PD+  R R +L+P+EAF  IF+L+ VL+  A  +   +W  +A+E  K  PD   VQ++  + PE  V    RWT ++ E    V     +        + +   G  +WLE L   ++PCAV S L    V   +   G+A +   ++ AE   E      L A +K+ RAP KC V++  P G++ AHE   + + LVG+FP ++L +AD T    D+L V NVRRLFAD+
Sbjct:  209 LNERFRPDYWQRLRVILQPEEAFANIFKLEGVLSANAHAIEYASWKQLAEELDKEPPDEDIVQQTYHLRPERIVQGVLRWTDSWREVLSIVYRQQEIYRERFLAEQHRPTRGLLRWLELLQRYDMPCAVYSRLDRVSVEKALTDMGVADFFKERITAESEVETAIQFLLVACVKMQRAPQKCVVYEDTPKGILAAHEVFSKAIGLVGLFPAFDLRLADLTVEDFDDLRVMNVRRLFADQ 447          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A199UQ80_ANACO (Phosphorylated carbohydrates phosphatase n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UQ80_ANACO)

HSP 1 Score: 134 bits (337), Expect = 1.720e-31
Identity = 89/240 (37.08%), Postives = 121/240 (50.42%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRD-FRWTQNFAEAKKFVLDYAMVVARMSADYKPKV-LPGAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADR 1031
            +N  L    L R RH ++PDEAFG IF  D +      L   AW  +A E GK +     VQR++     + VLR   RW    +E ++  L   +V        K +  + G + WL+ +H   +PCAVVS +    +   ++  GL  Y  A V+ ED  +  A  FL A++KL R P+KC VF+  P G+  AH   M  VAL+G  P YEL  AD    R  EL V N+RRLFA R
Sbjct:   12 LNNKLQECFLQRIRHAMKPDEAFGLIFSWDNVVADTRSLKLDAWRQLALEEGKDLLGDGHVQRNLLQASADHVLRKVLRWVGEESELER--LKSRLVELYYENFLKLEAPMDGLKDWLDAVHTAGIPCAVVSSIERRCLVEALNRMGLTKYFQAIVSEEDGMDSIAHRFLSAAIKLDRKPSKCVVFEDDPRGIAAAHNCTMMAVALIGPHPAYELVQADLAVARFSELSVINLRRLFAVR 249          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: A0A097PQB4_9ASPA (Haloacid dehalogenase-like hydrolase superfamily protein (Fragment) n=2 Tax=Asparagales TaxID=73496 RepID=A0A097PQB4_9ASPA)

HSP 1 Score: 134 bits (337), Expect = 2.780e-31
Identity = 88/245 (35.92%), Postives = 123/245 (50.20%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFR-WTQNFAEAKKFVLDYAMVVARMSADYKPKVLP------GAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADR 1031
            +NE L    L R RH ++PDEAFG +F  D +      L   AW  +A E G+ IP    V R+I     + VL+    W    +  +K       + +R+S  Y   +L       G ++WL+ ++    PCAVVS L   ++  T+   G++ Y  A V  ED  E  A  FL A+LKL R P+KC VF+  P G+  AH   M  VAL+G  P YEL  AD      +EL V N++RLFA +
Sbjct:   33 LNERLQECFLQRIRHAMKPDEAFGLVFSWDNVVADTRSLKLDAWRRLASEEGREIPTAGHVLRTIVNTAADHVLQKVLCWEIEESRLEK-------LKSRLSLLYYQNLLKLDTPMKGLKEWLDAVYTAGTPCAVVSCLDRKIMLETLKRMGISKYFQAVVTEEDGMESTAHRFLSAALKLDRKPSKCVVFEDDPRGITAAHNCTMMAVALIGAHPAYELEQADLAVASFNELSVINLKRLFAHK 270          
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Match: UPI0009E34498 (uncharacterized protein LOC110028442 isoform X1 n=2 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E34498)

HSP 1 Score: 135 bits (341), Expect = 3.270e-31
Identity = 88/245 (35.92%), Postives = 124/245 (50.61%), Query Frame = 3
Query:  318 VNELLAPDHLDRQRHVLRPDEAFGCIFQLDVLTDVAEGLLRPAWANVAKEYGKPIPDLRQVQRSIGMLPENAVLRDFR-WTQNFAEAKKFVLDYAMVVARMSADYKPKVLP------GAEKWLEQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATAFLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVADATTRRLDELLVYNVRRLFADR 1031
            +NE L    L R RH ++PDEAFG +F  D +      L   AW  +A E G+ IP    V R+I     + VL+    W +  +  +K       + +R+S  Y   +L       G ++WL+ ++    PCAVVS L   ++  T+   G++ Y  A V  ED  E  A  FL A+LKL R P+KC VF+  P G+  AH   M  VAL+G  P YEL  AD      +EL V N++RLFA +
Sbjct:   96 LNERLQECFLQRIRHAMKPDEAFGLVFSWDNVVADTRSLKLDAWRRLASEEGREIPTAGHVLRTIVNTAADHVLQKVLCWEKEESRLEK-------LKSRLSLLYYQNLLKLDTPMKGLKEWLDAVYTAGTPCAVVSCLDRKIMLETLKRMGISKYFQAVVTEEDGMESTAHRFLSAALKLDRKPSKCVVFEDDPRGITAAHNCTMMAVALIGAHPAYELEQADLAVASFNELSVINLKRLFAHK 333          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig872.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKG8_9STRA8.500e-9462.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2V3ILH4_9FLOR1.560e-4038.115-amino-6-(5-phospho-D-ribitylamino)uracil phospha... [more]
A0A6H5JLE3_9PHAE9.970e-3935.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1EUI5_9RHOD1.440e-3535.71Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7V5I600_9BACT1.650e-3335.15Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A2P6TFZ2_CHLSO7.810e-3336.51Pseudouridine-5-monophosphatase n=1 Tax=Chlorella ... [more]
M1VFT4_CYAM12.700e-3235.15Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
A0A199UQ80_ANACO1.720e-3137.08Phosphorylated carbohydrates phosphatase n=1 Tax=A... [more]
A0A097PQB4_9ASPA2.780e-3135.92Haloacid dehalogenase-like hydrolase superfamily p... [more]
UPI0009E344983.270e-3135.92uncharacterized protein LOC110028442 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig872contigP-wetherbeei_contig872:2894..5948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKG7
PFAMsHAD_2
Model size2150
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.58e-29
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase
Ec32 orthologEc-16_002900.1
Descriptionpseudouridine 5'-phosphatase activity
Cds size618
COG categoryL
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig872.1.2prot_P-wetherbeei_contig872.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig872 3911..5092 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187055.9344726-UTR-P-wetherbeei_contig872:2893..39101683187055.9344726-UTR-P-wetherbeei_contig872:2893..3910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig872 2894..3910 -
1683187055.96993-UTR-P-wetherbeei_contig872:5092..51101683187055.96993-UTR-P-wetherbeei_contig872:5092..5110Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig872 5093..5110 -
1683187055.977994-UTR-P-wetherbeei_contig872:5451..59481683187055.977994-UTR-P-wetherbeei_contig872:5451..5948Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig872 5452..5948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187055.9443223-CDS-P-wetherbeei_contig872:3910..42311683187055.9443223-CDS-P-wetherbeei_contig872:3910..4231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig872 3911..4231 -
1683187055.9530947-CDS-P-wetherbeei_contig872:4502..46761683187055.9530947-CDS-P-wetherbeei_contig872:4502..4676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig872 4503..4676 -
1683187055.9616325-CDS-P-wetherbeei_contig872:4969..50921683187055.9616325-CDS-P-wetherbeei_contig872:4969..5092Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig872 4970..5092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig872.1.2

>prot_P-wetherbeei_contig872.1.2 ID=prot_P-wetherbeei_contig872.1.2|Name=mRNA_P-wetherbeei_contig872.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MLPENAVLRDFRWTQNFAEAKKFVLDYAMVVARMSADYKPKVLPGAEKWL
EQLHAKNLPCAVVSHLPAAVVNATVHAAGLAPYLTAQVAAEDNFERDATA
FLKASLKLSRAPAKCAVFDCRPAGMMQAHEADMRGVALVGVFPVYELAVA
DATTRRLDELLVYNVRRLFADRPYESESGGMQLQLQTQPEAKRKTRTMTR
QEFRQ*
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mRNA from alignment at P-wetherbeei_contig872:2894..5948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig872.1.2 ID=mRNA_P-wetherbeei_contig872.1.2|Name=mRNA_P-wetherbeei_contig872.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3055bp|location=Sequence derived from alignment at P-wetherbeei_contig872:2894..5948- (Phaeothamnion wetherbeei SAG_119_79)
CTGGACGACGCGTCGTATCGCGAGCGGTGGCAAGACTTGCGCATGCAGGA GCTGCTGCAAATGCCTGACCTCCAACCCCAGACAGTGAGCCTCCTATTTC TTTCCTTGGCTAAAAGAAGAGCAAACCCCACGATCTCGCCAACCATATCG CTTCCGCAGTTTGGTCTGGAACGCACCACTCAACAGCTCTGTACCTGCAT CTCCGATTCCGCTGCTCAACGAAGATTCCTCTCTCACCCACGCCCCACTT TGCTCGGAACAACAATTGTAACGATCATTTCACCACGCCGTTCAAACTGC CGCCTATCTGCCGGCAGGTGAACGAGCTGCTGGCACCCGACCACCTGGAC CGGCAGCGGCACGTCCTTCGGCCAGACGAGGCGTTCGGATGCATCTTCCA GCTGGACGTTTTGACGGACGTGGCGGAGGGACTTCTGCGCCCTGCCTGGG CCAACGTCGCCAAGGAGTACGGCAAGCCCATCCCAGACCTGCGCCAGGTA AGAGGAGGGAAGAGGGATAGAGAGGGAGAGCCAGGCCGGGCAAGTGTGCC GAGTGTTTTGCTTTGGCTTGGCTGTTTTAGTTTCCGTCGGGATCTTCATC TTTTTCTGACGTGTTTCCGTTCATGCGGCCGGCCACTTTCTTTCCATCGG GGCTGCGTGCTGTAAGGGCCGAAGGTGTCCCCCGGAAGGAGGCGTGAGGA GAAGCCAGTGTTTTGGGCGTTCTCGAAGCTTACAAATACAGAGGATTTAT GCCCCCAAAGCCGCATATGAACGTAATTTTCACACGTCCCGCTGCTCCTC TCCGCTTCCCGTGCTCCCCGGTGGACCGCAATGCGCAGGTCCAGCGGAGC ATTGGCATGCTGCCGGAGAACGCGGTGCTGCGCGATTTTCGGTGGACGCA AAACTTCGCCGAGGCCAAAAAGTTCGTCCTCGACTACGCCATGGTCGTCG CCCGCATGTCTGCCGACTACAAGCCCAAGGCGAGTATTAACAACTTGTCT CCGCCGTTTGTTCCCTCTGTCTCGCTGTCCGTTGGTGTTACATTGTCGCG TCATGCCTGTGCGGTGCTACCGTGGTGCGTGCAGCAGCTGCCGATGTCTC CTTCCCTGCATCGCTGGCTGCTGGCACGACTCGTAAGCCTCTTAGATGGA TGAAGTCGCAGCCAATTCCGCATTGGCTTGCAGGGTCTCCCGTTCTTGAC GTTGGCTCGCTGGGCTGTCTCGCTTACCGTCTTTCCCTTGTCCTGTTCAC GGTGAACTGTTGAATCGTGCAGGTGCTGCCCGGCGCAGAGAAGTGGCTGG AGCAGCTCCACGCGAAGAACCTGCCGTGCGCCGTCGTGTCGCATCTGCCG GCAGCCGTAGTGAACGCCACCGTCCACGCCGCCGGCCTCGCCCCGTACCT CACCGCGCAAGTGGCGGCTGAGGACAACTTTGAGCGCGATGCTACGGTGA GCACATAACGAAGAACTACGGCTCGGTTTTATCGGTCGTGGGAGTAGTTG AACACCAGTGCTCATGCTCACGCGAGATTGTCCTGGCTTCGTGAAGGCCA GCCAACTCTTCTTCTGCGTTTCATCATGTCCGAACGCGAGCGGTTCACAT TTTCTGCGATTCATATTAAGTTCTTGACAGTCCAAGCTCATCTCTTTTCC CTGTCTCCTTGTTGTCCGGTCCTTTCCTTCCCAATTCCATCCGATGTTCG CCCGTGCCCGCCCGCAGGCGTTCCTGAAGGCATCGCTGAAGCTGTCCCGT GCGCCGGCCAAGTGCGCCGTATTCGACTGCCGCCCGGCCGGCATGATGCA GGCGCACGAGGCGGACATGCGCGGCGTGGCGCTTGTCGGCGTTTTCCCTG TCTACGAGCTGGCTGTGGCAGACGCCACGACGCGCCGCCTCGACGAGCTG CTCGTTTATAACGTCCGGCGGCTGTTCGCGGACCGCCCGTACGAGAGCGA GTCCGGCGGGATGCAGCTGCAGCTGCAGACGCAGCCCGAGGCGAAGCGCA AGACCCGGACCATGACCCGCCAGGAGTTCCGTCAGTAGAGAGAGACAGAC GAGAGAGAAAGAACACGATGTTAAAAGAAGAAGATCCAATCGGGGCATAC TCTCCGTTCGGATCGCTCCCGGAAACTTTTGGGAAGGTGAGAAGGGAGAG CTTGCCCCCCGAGCCGTCTGAGCGGAACTTTCTGAGGGACGGGCGTTCGA AGACGAGGCGCTTTGCAATTATCGGCGCTGGGCGGTAGCGGGCGGGGCGG CTGTGCACACAGGGGCGACGGCGGCAGGGGTGGGAAAGGGGCCGGAAAAA AGGAAAACGGAGCAAGGGCAGCGATATGGAGGGAGGGCTTTTGCGTCAAA CATAGGGGGTGCGAGGCAAAAGGGGAGGACCCTTCTGCCGGAAGACGGAA GAGAAACTGGGGAAGGGGAATGGACAGCAGCCGCCGGTGGCGGCGGCGGG CCGGACCGGGCCAGACCCGCTCCGGCTTGCCGCCACCGCTTGGCACTGCG CAGCCTTGTCAGACAGAAAATCGGGGGGAAGGGCGAAACCGCGCGAGCGA TGCGGAAGGCGATGCGAGAAGGCGGAGCCACCATATAAATAACCAGTGGC TATGAGGGCGGCAGGGGCGGGTCCATTGACATGGAAACCACCCATTTCTT GGCCTGAAGCGGGCGATTTTGTCGGGAGAAGAAGACGGGCAACTCAGCGA CCGATCCCGGTTTGGAGCGCCACTTTCCACCGCCGGCCGCAGAGTTTAGT GGCGGGAGCGGGAGCGGCATCCTGCTTTTCCGGAGGTGGCCGGCGCGGGC GGCCGGCTGGCTGTTGGGGCGCATCCCTTTCGAAAGATCAGGCGCCCAGA CTCGAGCGGAGAGAGTTGCTGAGAGCTTTGGAGAAGGATTAGGACCGCGG GAAAAAATGCGGCGCGGGCCGGGACGCCACAGGCTTGGAAGAAGCGACGG CGGCCGGCCCCGGCACGGCTTTGGGTGTTTGGCCGCTCGGCTCAAACACA TAGCAGCAAAGCAATAGTGTACATACACGTAATGGAAAGGAACGGTTTGG CCTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig872:2894..5948-

>mRNA_P-wetherbeei_contig872.1.2 ID=mRNA_P-wetherbeei_contig872.1.2|Name=mRNA_P-wetherbeei_contig872.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig872:2894..5948- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCCGGAGAACGCGGTGCTGCGCGATTTTCGGTGGACGCAAAACTT
CGCCGAGGCCAAAAAGTTCGTCCTCGACTACGCCATGGTCGTCGCCCGCA
TGTCTGCCGACTACAAGCCCAAGGTGCTGCCCGGCGCAGAGAAGTGGCTG
GAGCAGCTCCACGCGAAGAACCTGCCGTGCGCCGTCGTGTCGCATCTGCC
GGCAGCCGTAGTGAACGCCACCGTCCACGCCGCCGGCCTCGCCCCGTACC
TCACCGCGCAAGTGGCGGCTGAGGACAACTTTGAGCGCGATGCTACGGCG
TTCCTGAAGGCATCGCTGAAGCTGTCCCGTGCGCCGGCCAAGTGCGCCGT
ATTCGACTGCCGCCCGGCCGGCATGATGCAGGCGCACGAGGCGGACATGC
GCGGCGTGGCGCTTGTCGGCGTTTTCCCTGTCTACGAGCTGGCTGTGGCA
GACGCCACGACGCGCCGCCTCGACGAGCTGCTCGTTTATAACGTCCGGCG
GCTGTTCGCGGACCGCCCGTACGAGAGCGAGTCCGGCGGGATGCAGCTGC
AGCTGCAGACGCAGCCCGAGGCGAAGCGCAAGACCCGGACCATGACCCGC
CAGGAGTTCCGTCAGTAG
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