mRNA_P-wetherbeei_contig8692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8692.1.1
Unique NamemRNA_P-wetherbeei_contig8692.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 148 bits (374), Expect = 1.980e-41
Identity = 82/161 (50.93%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPL 483
            +YL GT+  GLLY ++   T    +GY DADWA +LD+R+SV  ++F  SGAA+SW SK Q  V  ST EAEY+A A AAQ AVW+R+L S L    + AT+++EDN+S I +A N     R KHIDIK H +R++VASGA+ L   K  D +AD+LTK L
Sbjct:   72 RYLNGTQPLGLLYSKN---TEKECIGYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGL 229          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A151QYP0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QYP0_CAJCA)

HSP 1 Score: 147 bits (372), Expect = 9.120e-40
Identity = 76/175 (43.43%), Postives = 111/175 (63.43%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKILG 525
            +Y+KGT   GL + +   + +   +GY D+DW  ++D+R+S   +VF    +A +W SK Q  VA STCEAEYVAA+++ QHAVWLR L S L +  +   L+  DNRS I LA N  +  R KHID++FH +RE+V  G++ L  + + +Q+ D+ TKPLP    + LR K+LG
Sbjct:  202 RYVKGTMSLGLCFTK---SDNYRLIGYSDSDWCGDVDDRKSTAGYVFFMGNSAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLSKLEIMKAEKVLIRVDNRSAIELAKNPINHERSKHIDVRFHFIREKVKEGSVELEHVGSKEQVTDIFTKPLPTTTFQKLR-KLLG 372          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A182GP81_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GP81_AEDAL)

HSP 1 Score: 141 bits (356), Expect = 9.830e-40
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = 1
Query:    7 LKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKI 519
            ++GT+   LL+RRDA  +S    GY DADWA + ++R+SV  ++F   G ++SWCSK Q  VA S+ EAEYVA +      +WL+ +   L  E +    ++EDNR CI +A N F   R KHIDIK+H +R+ VASG++ + PI+  DQLAD+ TKPL   R +TLR  +
Sbjct:    1 MQGTKDTKLLFRRDA--SSSPLTGYADADWASDTNDRKSVSGYLFQVFGCSVSWCSKKQPTVATSSSEAEYVALS------IWLQGILEDLQ-ETAKPVTIYEDNRGCICMAKN-FETKRTKHIDIKYHFLRDHVASGSLNIEPIRTQDQLADIFTKPLEFSRFKTLRTNL 161          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A0L6WK95_9AGAR (Copia protein n=1 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WK95_9AGAR)

HSP 1 Score: 142 bits (359), Expect = 2.570e-39
Identity = 77/157 (49.04%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   55 TTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKILG 525
            T+  + VG+ D+DWA  LD RRS+G + +      ISW S+ Q  VAAS+CEAEY+AA  AAQ  +WLR L   +G ++S AT +  DN +   L+ N     RVKH+DIK+H +RERVAS  +T+  I   D +ADL TKPLP+PR   LRR ILG
Sbjct:   78 TSPVSLVGFTDSDWANCLDTRRSMGRYAWSLGSGVISWASRKQKTVAASSCEAEYMAAFEAAQECIWLRALLQAIGHDLSKATTIMCDNNAATNLSENPLLYSRVKHVDIKYHFLRERVASNELTIRYINTRDNIADLFTKPLPLPRFSRLRR-ILG 233          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A151R5Z5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R5Z5_CAJCA)

HSP 1 Score: 143 bits (360), Expect = 2.870e-39
Identity = 75/175 (42.86%), Postives = 108/175 (61.71%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKILG 525
            +Y+KGT   GL + +   + +   +GY D+DW  ++D+R+S   +VF     A +W SK Q  VA STCEAEYVAA+++ QHAVWLR L   L +  +   L+  DNRS I LA N  +  R KHID +FH +RE+V  G++ L  + + +Q+ D+ TKPLP    + LR K+LG
Sbjct:   75 RYVKGTMSLGLCFTK---SDNYRLIGYSDSDWCGDVDDRKSTTGYVFFLGNTAFTWLSKKQPIVALSTCEAEYVAASWSVQHAVWLRNLLRKLEIMKAEKVLIRVDNRSAIELAKNSINHERSKHIDFRFHFIREKVKEGSVELEHVGSKEQVTDIFTKPLPATTFQELR-KLLG 245          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A6S7FTR6_PARCT (Uncharacterized protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FTR6_PARCT)

HSP 1 Score: 139 bits (351), Expect = 5.780e-39
Identity = 83/166 (50.00%), Postives = 103/166 (62.05%), Query Frame = 1
Query:   28 GLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKILG 525
            GLLY     TTS   VGY DADWA +LD+R+S   +VF  S AAISW SK Q CVA ST EAEY+A A A Q AVWL++L S L  E +   L+ EDN++ I +A N     R KHIDIK+H +RE VAS A+ L      + +AD+ TK L +    T  RK+LG
Sbjct:    2 GLLYDGSKTTTS--CVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSEPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSMV---TKLRKMLG 162          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A0S3TD48_PHAAN (Uncharacterized protein n=1 Tax=Vigna angularis var. angularis TaxID=157739 RepID=A0A0S3TD48_PHAAN)

HSP 1 Score: 140 bits (354), Expect = 6.330e-39
Identity = 72/173 (41.62%), Postives = 104/173 (60.12%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKI 519
            +Y+KGT   GLLY     +      GY D+DW  ++D+R+S   +VF     A +W SK Q  V  STCEAEYVAA+++ +HA+WLR L   L +      L+  DNRS I LA N  +  R KHID++FH +RE++  G++ L  +++  Q+AD+ TKPLP    + LR+ I
Sbjct:   27 RYVKGTMSFGLLYTN---SDHYRLSGYSDSDWCGDIDDRKSTTGYVFFMGDTAFTWLSKKQPIVTLSTCEAEYVAASWSVRHAIWLRNLLQSLEIMQEEKVLIRVDNRSAIELAKNPVNHERSKHIDVRFHFIREKLKEGSVELEHVESKKQIADIFTKPLPTRSFQDLRKLI 196          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A7D9KES8_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KES8_PARCT)

HSP 1 Score: 150 bits (378), Expect = 6.520e-39
Identity = 88/175 (50.29%), Postives = 110/175 (62.86%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKILG 525
            +YL GTR  GLLY     TTS   VGY DADWA +LD+R+S   +VF  S AAISW SK Q CVA ST EAEY+A A A Q AVWL++L S L  + +   L+ EDN++ I +A N     R KHIDIK+H +RE VAS A+ L      + +AD+ TK L V +   LR K+LG
Sbjct:  321 RYLNGTRDMGLLYDGSKTTTS--CVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMALASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLR-KMLG 492          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 148 bits (374), Expect = 1.690e-38
Identity = 87/175 (49.71%), Postives = 109/175 (62.29%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRRKILG 525
            +YL GTR  GLLY     TTS   VGY DADWA +LD+R+S   +VF  S AAISW SK Q CVA ST EAEY+  A A Q AVWL++L S L  + +   L+ EDN++ I +A N     R KHIDIK+H +RE VAS A+ L      + +AD+ TK L V +   LR K+LG
Sbjct:  469 RYLNGTRDMGLLYDGSKTTTS--CVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCVALSTAEAEYMTLASATQEAVWLQQLLSDLKSKPTGPMLILEDNQAAICMAKNAQYHGRAKHIDIKYHFIREHVASAAVKLEYCSTEEMIADIFTKGLSVVQFTKLR-KMLG 640          
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Match: A0A2G8KMC7_STIJA (Putative Gag-pol polyprotein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KMC7_STIJA)

HSP 1 Score: 142 bits (359), Expect = 2.700e-38
Identity = 81/171 (47.37%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRSGAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*ATLLHEDNRSCIALANNVFSEHRVKHIDIKFHIVRERVASGAITLVPIKAVDQLADLLTKPLPVPRTRTLRR 513
            +YL+GT   GLLY +D    S   +GY DADWA ++++R+S   ++F  SGAA+SW SK Q CVA ST EAEY+A A AAQ AVWL+RL + L  + +    + EDN+S I +A N     R KHI+IK+H +RE V  G I L+     D +ADLLTK L   R   LR+
Sbjct:  155 RYLRGTINYGLLYTKDG---SNECIGYSDADWAGDVNDRKSTSGYLFQVSGAAVSWKSKKQTCVALSTAEAEYIALASAAQEAVWLQRLNTDLQNKPNKPLRILEDNQSAICMAKNPQFHGRTKHIEIKYHFIRETVEHGTIELMYCPTEDMVADLLTKGLSKQRFEKLRQ 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C093D0F1.980e-4150.93LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
A0A151QYP0_CAJCA9.120e-4043.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GP81_AEDAL9.830e-4045.03Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A0L6WK95_9AGAR2.570e-3949.04Copia protein n=1 Tax=Termitomyces sp. J132 TaxID=... [more]
A0A151R5Z5_CAJCA2.870e-3942.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7FTR6_PARCT5.780e-3950.00Uncharacterized protein n=3 Tax=Paramuricea clavat... [more]
A0A0S3TD48_PHAAN6.330e-3941.62Uncharacterized protein n=1 Tax=Vigna angularis va... [more]
A0A7D9KES8_PARCT6.520e-3950.29Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT1.690e-3849.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8KMC7_STIJA2.700e-3847.37Putative Gag-pol polyprotein n=1 Tax=Stichopus jap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8692contigP-wetherbeei_contig8692:14..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15699201
Model size534
Max annot lvl400682.PAC_15699201|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3AR45@33154|Opisthokonta
Descriptiontransposition, RNA-mediated
Cds size297
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187054.6268122-CDS-P-wetherbeei_contig8692:13..3101683187054.6268122-CDS-P-wetherbeei_contig8692:13..310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8692 14..310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187054.6377742-UTR-P-wetherbeei_contig8692:310..5471683187054.6377742-UTR-P-wetherbeei_contig8692:310..547Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8692 311..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8692.1.1prot_P-wetherbeei_contig8692.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8692 14..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8692.1.1

>prot_P-wetherbeei_contig8692.1.1 ID=prot_P-wetherbeei_contig8692.1.1|Name=mRNA_P-wetherbeei_contig8692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
KYLKGTRGKGLLYRRDAPTTSGAAVGYVDADWARNLDNRRSVGAHVFLRS
GAAISWCSKLQDCVAASTCEAEYVAAAYAAQHAVWLRRLASCLGLEVS*
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mRNA from alignment at P-wetherbeei_contig8692:14..547+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8692.1.1 ID=mRNA_P-wetherbeei_contig8692.1.1|Name=mRNA_P-wetherbeei_contig8692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig8692:14..547+ (Phaeothamnion wetherbeei SAG_119_79)
AAGTACCTGAAAGGGACGAGGGGGAAGGGCCTGCTGTACCGCCGGGATGC TCCGACTACCAGCGGTGCCGCGGTCGGCTACGTAGATGCCGACTGGGCGC GCAACCTCGACAACAGGCGCTCGGTCGGGGCGCACGTCTTCCTGCGGTCC GGCGCCGCCATCTCATGGTGCTCCAAGCTGCAGGACTGCGTGGCCGCTTC GACCTGTGAGGCCGAGTACGTAGCGGCGGCCTACGCAGCTCAGCACGCGG TATGGCTGCGACGCCTGGCCAGCTGCTTGGGACTAGAAGTGTCATAGGCC ACTCTGCTCCACGAGGACAACCGAAGCTGCATCGCTCTGGCAAACAACGT CTTCAGCGAGCATCGCGTCAAGCACATCGACATTAAGTTCCACATTGTGC GGGAGCGGGTGGCGAGCGGCGCGATTACTCTCGTTCCGATCAAGGCGGTT GACCAGCTGGCAGATTTGCTTACAAAGCCACTTCCGGTTCCCCGTACTCG TACTTTACGCAGAAAGATATTAGGGGAATGATTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8692:14..547+

>mRNA_P-wetherbeei_contig8692.1.1 ID=mRNA_P-wetherbeei_contig8692.1.1|Name=mRNA_P-wetherbeei_contig8692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig8692:14..547+ (Phaeothamnion wetherbeei SAG_119_79)
AAGTACCTGAAAGGGACGAGGGGGAAGGGCCTGCTGTACCGCCGGGATGC
TCCGACTACCAGCGGTGCCGCGGTCGGCTACGTAGATGCCGACTGGGCGC
GCAACCTCGACAACAGGCGCTCGGTCGGGGCGCACGTCTTCCTGCGGTCC
GGCGCCGCCATCTCATGGTGCTCCAAGCTGCAGGACTGCGTGGCCGCTTC
GACCTGTGAGGCCGAGTACGTAGCGGCGGCCTACGCAGCTCAGCACGCGG
TATGGCTGCGACGCCTGGCCAGCTGCTTGGGACTAGAAGTGTCATAG
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