mRNA_P-wetherbeei_contig8691.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8691.1.1
Unique NamemRNA_P-wetherbeei_contig8691.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 4.060e-65
Identity = 123/231 (53.25%), Postives = 153/231 (66.23%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTD--GSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNA-ASVTDGCVAMKASLETVYECLGITCANAGGLLADDGGYVAGFEPCQDA 684
            +WMYV  E+ DAV D  +G+ + ND    AWDE WAFYAGS E TD  G+G+G +LY+LA+KR  N  T TGD DG D+TG SA+N+  L L + G A L AE   C+E    I +++ LM V L+QG LRY Y ADPA G  GDK  +ELWAF A++LP +  CDA V  K+ +N  +G+A A + DG  A+KA LETVY C+GITCA  GGLL D G Y A FEPC DA
Sbjct:  159 IWMYVTHELYDAVGDCENGDLSANDGGPHAWDEGWAFYAGSLEGTDVGGTGDGQMLYALAEKRCENFGTCTGDSDGSDTTGVSAINSELLTLWETGQASLLAEE--CTEASAVIDQILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSASILPWISTCDAAVGTKVRDNTELGSASAPMADGYAAIKAELETVYSCMGITCAQVGGLLDDTGAYYADFEPCVDA 387          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 2.840e-60
Identity = 113/231 (48.92%), Postives = 151/231 (65.37%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADL-NAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNA-ASVTDGCVAMKASLETVYECLGITCANAGGL-LADDGGYVAGFEPCQDA 684
            VWMYVI E+EDA+ D   GN   ND    AWDE W FYAGS E T+G+G+G +LY+LA+KR  N +T T DDDG D TGT+ VN+  LEL ++G   L + +     +++    K+++LM V LVQG LRY Y ADP  G+ GDKA +ELWAF AA+LPR+  CD  VA  +  N  I +A A +++G V +K  LE+VY C+GI+C+  GGL + +   Y  GFEPC D+
Sbjct:  150 VWMYVIHELEDAIEDCDIGNLNANDGGPHAWDEGWGFYAGSLEGTEGTGDGVMLYALAEKRCENFATCTADDDGSDITGTAQVNSDMLELYKEGQVYLLDGDCGAAGDVKD---KIIDLMGVPLVQGMLRYFYNADPEAGDGGDKAAAELWAFSAAMLPRINECDEEVATLVRANTDIASADAPMSEGYVFLKEQLESVYSCMGISCSQVGGLVIGESTTYYDGFEPCGDS 377          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 5.290e-60
Identity = 116/240 (48.33%), Postives = 146/240 (60.83%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDS---------LSGNRTNNDAPVQAWDEAWAFYAGSQENT--DGSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNA-ASVTDGCVAMKASLETVYECLGITCANAGGLLADDGGYVAGFEPCQDA 684
            VWMYV  E+ DAV D            G+ + ND    AWDE WAFY GS E T   GSG+G +LY+LA+KR  N  T TGD DG D+TG SA+N+  L+L + G A+L A    C++    I +++ LM V L+QG LRY Y ADPA G  GDK  +ELWAF AA+LP +  CD  V   + +N  +G A A + DG  A+K  LE+VY C+GITCA  GGLL D G Y   FEPC D+
Sbjct:  314 VWMYVTHELYDAVEDCEIGGGCVKVAEGDLSANDGGPHAWDEGWAFYTGSLEGTAVGGSGDGQMLYALAEKRCENFGTCTGDSDGSDATGVSAINSELLDLWEDGKANLLAGQ--CTQASAVIDEILPLMAVPLIQGLLRYTYLADPAIGTGGDKEAAELWAFSAAILPWISACDPAVGTAVRDNTELGGASAPMADGYAAIKGQLESVYSCMGITCAQVGGLLDDTGAYYTNFEPCTDS 551          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A7S2V1S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S6_9STRA)

HSP 1 Score: 206 bits (524), Expect = 5.310e-59
Identity = 110/229 (48.03%), Postives = 142/229 (62.01%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNAASVTDGCVAMKASLETVYECLGITCANAGGLLAD--DGGYVAGFEPCQD 681
            VWMYVI EMEDA+ D ++ + T NDA V AWDEA AFY GS   T G+G G+LLY+LA KR  N  T TGD+DG+D  GT+AVN        QG  +L      C ++      +V+ MT+ L+QG +RYLY+ADPAGGN G+KA +ELWAF AA+LPR+  CD   A  L  NAYI N     +    +KA++E+ Y CLGITC + GGL  +     Y    +PC +
Sbjct:   23 VWMYVIHEMEDAINDCVADDLTTNDAAVVAWDEAVAFYTGSLVGTTGTGSGNLLYTLAQKRCANFGTCTGDNDGNDFEGTAAVNEKVFNFFDQGIVELQIGE--CQDVIKIKDNIVDQMTIPLIQGVMRYLYWADPAGGNGGNKAHAELWAFAAAILPRISLCDTGAASILRSNAYILNTPMGQNSRATVKAAIESTYTCLGITCDDIGGLFVEGSSSNYYPSMQPCSE 249          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A7S2UVU0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVU0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 8.110e-58
Identity = 113/217 (52.07%), Postives = 140/217 (64.52%), Query Frame = 1
Query:   43 DSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNVSTGTGDDDGDDS-TGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNAASVTDGCVAMKASLETVYECLGITCANAGGLLADDGG---YVAGFEPCQD 681
            D  S + T+ND  V AWDEA AFY GS E  DG G G+LLYSLADKR  N  T TGD    ++ +GTSAVN   + L ++G  +L+     C  +      +V+ MT+ LVQGTLRYLY ADP G NEG+KAR+ELWAF AA+LPRV  CDA VA  L EN+YIGN   + DG   +K +LE  Y CLG  C++ GG++  DGG   YV+G EPC D
Sbjct:    2 DCKSSDLTDNDNGVVAWDEAVAFYTGSLEGVDGKGNGNLLYSLADKRCANFGTCTGDVGNSNAISGTSAVNERVMNLFREGQVNLHNGD--CGHVEEVKGAIVDQMTIPLVQGTLRYLYKADPKGANEGNKARAELWAFAAAILPRVDKCDAGVATMLRENSYIGN-DPMKDGFKTVKEALEKTYSCLGFKCSDVGGIV--DGGAGQYVSGMEPCVD 213          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A7R9Y8Q2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Q2_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.660e-52
Identity = 116/240 (48.33%), Postives = 147/240 (61.25%), Query Frame = 1
Query:    4 WMYVIQEMEDAVVDSLSGNRTNNDAP-VQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGN------EGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYI--GNAASVTDGCVAMKASLETVYECLGITCANAGGLLAD--DG--GYVAGFEPCQDA 684
            WMYVI E+EDAV+D  +G   NN+ P V AWDE WAFYAGS E  DG+G G  +Y+LA+KR  N  T TGDDDGD STG SAVNA  L L Q+G   LNA    C+     + ++V  MTV L+QG LRY Y AD + G       E +  ++E WAF AAV+P++  CDA +A ++  N     GN + V DG   + A ++  Y CLGITCA+ GG L+   DG   YV+G  PC DA
Sbjct:  470 WMYVIHELEDAVLDCQAGTPMNNEDPAVHAWDEGWAFYAGSLE--DGTGSGVQVYALAEKRCANFFTCTGDDDGDASTGRSAVNAELLSLYQEGQLALNAGN--CNGAALVVREIVKQMTVPLIQGVLRYAYLADQSIGGVQATPEEWEDDQAEGWAFTAAVMPQLDACDAALAAEIRANMEFVQGNTSPVQDGYEVVYAKMQRFYSCLGITCADVGGYLSSVTDGVPTYVSGAGPCVDA 705          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A7S1IQR3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IQR3_9EUGL)

HSP 1 Score: 179 bits (454), Expect = 1.150e-48
Identity = 104/226 (46.02%), Postives = 132/226 (58.41%), Query Frame = 1
Query:    4 WMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNAASVTDGCVAMKASLETVYECLGITCANAGGLLADDGGYVAGFEPCQD 681
            WMYV+ EMEDA+ D  +G   +ND  V AWDEAWAFYAGS E  DGSG G   Y+LADKR  +  T T       ++G SA+N   L L Q G A L A    C++ R  +  +   M V LVQG LRY + ADP  G  G K  +E WAF   +LP+V  C    A  +  N  I +A+ V+ G  A+K +LE+VY CLGITC + GG+L +   Y AG EPC+D
Sbjct:  475 WMYVVVEMEDAIQDCTAGLLADNDKGVHAWDEAWAFYAGSLEGADGSGSGVQPYALADKRCVDFGTCT-------ASGGSAINRDILALFQDGLALLRAGK--CTDARSVMTAITRKMAVPLVQGVLRYAWKADPVNGVSGPKEIAEGWAFTRGILPQVQQCSVAAATTVRNNMDIASASPVSGGFAAVKQALESVYPCLGITCGDVGGVL-NGASYYAGMEPCRD 690          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.430e-45
Identity = 112/231 (48.48%), Postives = 134/231 (58.01%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGD--LLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGD-KARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNA-ASVTDGCVAMKASLETVYECLGITCANAGGLLADDG--GYVAGFEPC 675
            VWMYVI EME+AV     G+    D     WDEAWAFYAGS E   G+ +GD  +LY+LA KR  N  T  G    D  TGT+A+N   LEL   G   L      C+E       +V LMTV LVQ TLRYLY ADPA   +GD K  +ELWAF AA+LP +  C A VA  +  N+ I +  A V+ G VA+K  LE++Y CLG+TC   GGLLA D    YV G EPC
Sbjct:  151 VWMYVIHEMENAVGACNRGDNGAADGGPHYWDEAWAFYAGSLEGESGNADGDGKMLYALAQKRCGNFGTCGG---ADGITGTAAINDDILELIGAGSGYLLEGK--CAEAEEAKESIVQLMTVPLVQATLRYLYRADPASDYDGDAKHWAELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAPVSAGFVAVKEELESIYSCLGMTCDQVGGLLAGDSTTDYVPGLEPC 376          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A7S1Y3V3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y3V3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 5.120e-45
Identity = 104/230 (45.22%), Postives = 131/230 (56.96%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNAASVTDGCVAMKASLETVYECLGITCANAGGLLADDGG--YVAGFEPCQDA 684
            VWMYVI+E EDA+ D + G  T+ND PV AWDE  AFYAGS E   GS +G + Y LA+KR  N  T    + GD+ TGTS VN   L L  QG  D+      C E R    ++V LMTV L+QGTLRY Y +      + +K R+E   F AAVLP V  C A  AE++YE   +G   +     V  K + E  Y+C+GITC+  GGL  DDG   Y  G  PC+D+
Sbjct:   14 VWMYVIREFEDALDDCVEGRITDNDDPVHAWDEGVAFYAGSLEGPSGSDDGVMPYRLAEKRCQNFKTCG--EKGDELTGTSYVNIELLRLFDQGQNDILTGQ--CGEARKKKERIVELMTVPLIQGTLRYAYRSAALPTLDTEKGRAEGSTFAAAVLPIVAKCSARDAERIYEEMKVGGGGATEYDNV--KYAFERNYKCMGITCSQVGGLW-DDGEQRYYDGAHPCKDS 236          
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Match: A0A6T1L9M0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1L9M0_9DINO)

HSP 1 Score: 159 bits (401), Expect = 5.700e-42
Identity = 102/229 (44.54%), Postives = 127/229 (55.46%), Query Frame = 1
Query:    1 VWMYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGDLLYSLADKRRTNV----STGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEPPLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAFVAAVLPRVGFCDATVAEKLYENAYIGNAASVTDGCVAMKASLETVYECLGITCANAGGLLADDGGYVAGFEPC 675
            VWMYVI+EMEDA++D  SG    ND PV AWDEA AFY+GS E   GS  G LLY LA KR  N     STGTG            VNA  +E   +G   L      C E+     ++V LM+V LVQG+LRY Y  D   G  G K R+E   F AAVLPRV  CD   A+ + +N      + ++ G  A+KA+ E+ Y CLG+TC + GGL+     + AG EPC
Sbjct:  269 VWMYVIREMEDAIMDCQSGCLNCNDDPVHAWDEAVAFYSGSLEGPAGSSSGKLLYRLAVKRCGNFGTCGSTGTG------------VNALIMEQFTRGKNKLLQSK--CVEVVPIKRRIVELMSVPLVQGSLRYAYKVDKLQG--GSKERAEGDVFSAAVLPRVAACDVGAAQTISDNLAYAATSPMSSGFAAVKAAFESTYACLGVTCEDIGGLIRAGNDHYAGAEPC 481          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8691.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ42_ECTSI4.060e-6553.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFX4_ECTSI2.840e-6048.92Probable high CO2 inducible periplasmic protein n=... [more]
A0A6H5KYS6_9PHAE5.290e-6048.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V1S6_9STRA5.310e-5948.03Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UVU0_9STRA8.110e-5852.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9Y8Q2_9STRA2.660e-5248.33Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1IQR3_9EUGL1.150e-4846.02Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
D8LDE3_ECTSI2.430e-4548.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1Y3V3_9STRA5.120e-4545.22Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6T1L9M0_9DINO5.700e-4244.54Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8691contigP-wetherbeei_contig8691:505..1659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQ42
PFAMsFea1
Model size684
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.69e-64
EggNOG OGs29F58@1|root,2RNAK@2759|Eukaryota
Ec32 ortholog descriptionprobable high CO2 inducible periplasmic protein
Ec32 orthologEc-05_005150.1
Cds size678
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187054.5323129-CDS-P-wetherbeei_contig8691:504..8021683187054.5323129-CDS-P-wetherbeei_contig8691:504..802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8691 505..802 -
1683187054.5438237-CDS-P-wetherbeei_contig8691:1047..13391683187054.5438237-CDS-P-wetherbeei_contig8691:1047..1339Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8691 1048..1339 -
1683187054.5540328-CDS-P-wetherbeei_contig8691:1565..16531683187054.5540328-CDS-P-wetherbeei_contig8691:1565..1653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8691 1566..1653 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187054.56474-UTR-P-wetherbeei_contig8691:1653..16591683187054.56474-UTR-P-wetherbeei_contig8691:1653..1659Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8691 1654..1659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8691.1.1prot_P-wetherbeei_contig8691.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8691 505..1653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8691.1.1

>prot_P-wetherbeei_contig8691.1.1 ID=prot_P-wetherbeei_contig8691.1.1|Name=mRNA_P-wetherbeei_contig8691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp
MYVIQEMEDAVVDSLSGNRTNNDAPVQAWDEAWAFYAGSQENTDGSGEGD
LLYSLADKRRTNVSTGTGDDDGDDSTGTSAVNAAALELSQQGHADLNAEP
PLCSEIRFTIYKMVNLMTVSLVQGTLRYLYFADPAGGNEGDKARSELWAF
VAAVLPRVGFCDATVAEKLYENAYIGNAASVTDGCVAMKASLETVYECLG
ITCANAGGLLADDGGYVAGFEPCQDA
back to top

mRNA from alignment at P-wetherbeei_contig8691:505..1659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8691.1.1 ID=mRNA_P-wetherbeei_contig8691.1.1|Name=mRNA_P-wetherbeei_contig8691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1155bp|location=Sequence derived from alignment at P-wetherbeei_contig8691:505..1659- (Phaeothamnion wetherbeei SAG_119_79)
GTGTGGATGTACGTGATCCAAGAGATGGAAGACGCCGTCGTTGACAGCCT CAGTGGCAATCGCACCAACAACGACGCCCCTGTCCAGGCTTGGGGTGAGC TCATTTCGGGGCACTTTTTGCGGTTCGATTATCAGACGAGCAACCGTCTG TCGTCAGCCGGCTTTCTGTTTCGAGAAATCAAATCGCTTCCCCTATTTCT TTGCCTTGCCTTTTCCTTTTCCTCCAACATTTTCTACCTGTGCTGAGCGC AATGCGCCATTTCTCTCGCAATCGCTCTTCTTTTTAGCCTGCCGGTCCCC CATCTGCCCGCCGGCGCCAGATGAGGCCTGGGCCTTCTACGCGGGCTCGC AGGAGAACACGGACGGCTCCGGCGAGGGCGACCTCCTCTACAGCCTCGCA GACAAGCGCCGCACCAACGTCAGCACGGGCACGGGCGACGACGACGGCGA CGACTCGACTGGCACCTCGGCCGTCAACGCAGCAGCGCTGGAGCTGTCCC AGCAGGGCCACGCGGACCTCAACGCCGAGCCGCCGCTGTGCAGCGAGATC AGATTTACTATTTATAAAATGGTGAATCTGATGACGGTTTCGCTGGTCCA GGGCACGCTCAGGTTAAGAGAAAGCTGGATGCGTTGTTGCAATTTTTTTC TAGTAACTTTTCCGGTTGCGGGCGGCACTCCCGCTGCTGTCTACCGCCAC TGGCGGTCACCTCTGTCTGCTGTCTTCCTCTCTACCATCCGCTGCCTTTC CTTACACCCGTCGCTAGCTTGCCTCTCTTTCTCTTCCTGCTCCTTTTCCC CTCTCTAACCGTTTTCATCTTCCCTGTCTTCTCCTTTCCTTCCTCCGTTC CTTGCAGGTACCTCTACTTCGCGGACCCTGCCGGAGGCAACGAGGGTGAC AAGGCGCGCTCCGAGCTGTGGGCATTCGTCGCCGCCGTCCTGCCGCGTGT TGGCTTTTGCGACGCCACCGTCGCCGAAAAGCTCTATGAAAATGCGTACA TCGGCAATGCGGCCTCGGTGACCGACGGATGTGTGGCCATGAAGGCGTCC CTCGAGACGGTCTACGAGTGCCTCGGCATAACCTGCGCCAACGCCGGCGG CCTGCTGGCCGACGACGGTGGCTACGTCGCCGGTTTCGAGCCGTGCCAGG ATGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8691:505..1659-

>mRNA_P-wetherbeei_contig8691.1.1 ID=mRNA_P-wetherbeei_contig8691.1.1|Name=mRNA_P-wetherbeei_contig8691.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig8691:505..1659- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGTGATCCAAGAGATGGAAGACGCCGTCGTTGACAGCCTCAGTGG
CAATCGCACCAACAACGACGCCCCTGTCCAGGCTTGGGATGAGGCCTGGG
CCTTCTACGCGGGCTCGCAGGAGAACACGGACGGCTCCGGCGAGGGCGAC
CTCCTCTACAGCCTCGCAGACAAGCGCCGCACCAACGTCAGCACGGGCAC
GGGCGACGACGACGGCGACGACTCGACTGGCACCTCGGCCGTCAACGCAG
CAGCGCTGGAGCTGTCCCAGCAGGGCCACGCGGACCTCAACGCCGAGCCG
CCGCTGTGCAGCGAGATCAGATTTACTATTTATAAAATGGTGAATCTGAT
GACGGTTTCGCTGGTCCAGGGCACGCTCAGGTACCTCTACTTCGCGGACC
CTGCCGGAGGCAACGAGGGTGACAAGGCGCGCTCCGAGCTGTGGGCATTC
GTCGCCGCCGTCCTGCCGCGTGTTGGCTTTTGCGACGCCACCGTCGCCGA
AAAGCTCTATGAAAATGCGTACATCGGCAATGCGGCCTCGGTGACCGACG
GATGTGTGGCCATGAAGGCGTCCCTCGAGACGGTCTACGAGTGCCTCGGC
ATAACCTGCGCCAACGCCGGCGGCCTGCTGGCCGACGACGGTGGCTACGT
CGCCGGTTTCGAGCCGTGCCAGGATGCC
back to top