mRNA_P-wetherbeei_contig8673.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8673.1.1
Unique NamemRNA_P-wetherbeei_contig8673.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: D7FYJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ4_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.060e-40
Identity = 73/113 (64.60%), Postives = 91/113 (80.53%), Query Frame = 1
Query:   10 WEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLEA 348
            +EDQQ INEFGRLNTR  E++ +K  +K+++D+LDDA+TELMT EG SV LMLGD F+ C EE+ATDYCE++QE  Q++LD L +EE+ I  RQ  LKK LYARFGSSIQLEA
Sbjct:    8 YEDQQKINEFGRLNTRLLEIRDDKSHIKDILDKLDDATTELMTGEGDSVMLMLGDSFMECEEEFATDYCERQQEKRQSKLDDLVDEEKTILLRQGVLKKELYARFGSSIQLEA 120          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A7S2V806_9STRA (Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V806_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.810e-40
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 1
Query:    4 VRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLE 345
            VRWEDQQ INEFGRLNTR  ELQ E K  KE +D+LDDASTELMT +G+ V+L+LG+ F+ CNE+YAT+Y +K+QE  Q  +D L+EEE  I +RQ +LK+ LYARFGSSI LE
Sbjct:   14 VRWEDQQKINEFGRLNTRLHELQVELKLHKENLDKLDDASTELMTEDGSGVKLLLGEVFIECNEDYATEYLDKEQEKTQVLVDQLSEEEHTILERQKELKEVLYARFGSSINLE 127          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A835Z9N6_9STRA (Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.380e-38
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQ----------------EAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLEA 348
            +VRWEDQQ INEFGRLNTR  EL+ + K LK  +D LDDA+TELMT +G  V L LGD FV   EE+AT+YCEKKQ                E  QA+LD L+ EE+ I KRQA+LKK LYARFG+SI LEA
Sbjct:   11 EVRWEDQQQINEFGRLNTRLNELRGDTKALKGELDNLDDATTELMTGDGGKVNLQLGDAFVVVEEEFATEYCEKKQSIAPAESXXXXXXXXXEGVQAKLDALSREEDSILKRQAELKKILYARFGASINLEA 142          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A7S3YAJ8_HETAK (Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAJ8_HETAK)

HSP 1 Score: 122 bits (307), Expect = 9.100e-34
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLEA 348
            +VR EDQ  INEFG+LN R  E++ + K LK+  D+LDDA+TELMT +G  V++ +G+ F+ C+EEYAT+YCEK+QE  Q  LD   EEE  I +RQ +LK  LY RFG +I LEA
Sbjct:   12 EVRREDQLQINEFGQLNNRLNEIREDCKALKDKFDRLDDANTELMTGDGDDVKIFMGESFIQCSEEYATEYCEKEQEKLQGMLDTFKEEETAILERQKELKVVLYGRFGDAINLEA 127          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: W7TPN2_9STRA (Prefoldin subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPN2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 9.530e-30
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLE 345
            +VR EDQ+ INEFGRLN ++ EL  +   LKE +++LDDA TELM   G  V+L LG+ F+  +E+YAT++CE+KQE  QA+++ L  E+  I  RQ +LKK LY RFGSSI LE
Sbjct:   29 EVRKEDQEMINEFGRLNNQYLELDEDLAYLKEQLEKLDDAVTELMVGVGGPVRLSLGEAFMDVSEDYATEHCERKQEQLQAKVEELGREKGKIATRQMELKKVLYGRFGSSINLE 143          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A6V0ZXN8_9STRA (Prefoldin subunit 4 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0ZXN8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.590e-30
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLEA 348
            +VR EDQ  INEFGRLN R  E++R+   LK+ ++++DDASTELM  +G +V L LG       E+ AT+YCE + E  Q  LD L+EEE GI +RQ  LKK LY RFG SI LEA
Sbjct:   18 EVRREDQDAINEFGRLNARLDEVKRQVDNLKKTLEKIDDASTELMMGDGDAVMLSLGGAMFEATEDEATEYCEAEVERQQKILDKLSEEEAGIVERQETLKKLLYGRFGKSINLEA 133          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A6U1YJT7_TRICV (Prefoldin subunit 4 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1YJT7_TRICV)

HSP 1 Score: 109 bits (272), Expect = 1.870e-28
Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLE 345
            +VR  DQ+ IN FGRLN R  E++  + +LK+ ++Q+DDASTELM   G SV L+LGD F  C EE AT++CE + +  Q  +D L EEE  I + Q  LK+ LYARFG SI LE
Sbjct:   11 EVRRVDQENINTFGRLNARLYEVRASRDDLKKKLEQIDDASTELMMGSGDSVLLLLGDAFFECTEEEATEHCEAEADRLQGTVDELEEEESAILEEQGTLKRVLYARFGQSINLE 125          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A1E7F096_9STRA (Prefoldin subunit 4 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F096_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.920e-28
Identity = 63/117 (53.85%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMT-SEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLEA 348
            +VR EDQ  IN+F RLN R  EL+ E+K +K+ +++LDDASTELM  SEG +V L++G+ F   +EE AT+YCE + E    +L+ L+ EE  I +RQA+LKK LY RFG SIQLEA
Sbjct:   12 EVRREDQDNINKFARLNARLHELRDERKIIKQSLERLDDASTELMMGSEGDNVMLLIGESFFDTSEEDATEYCESEVERMSGELEILDGEESTILERQAELKKLLYGRFGKSIQLEA 128          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A7S0B128_9STRA (Prefoldin subunit 4 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B128_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.330e-28
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLE 345
            +VR EDQ+ IN+FGRLN R  E++ E+  +K+ ++++DDASTELM   G  V LMLGD F   +EE AT++CE + E  QA +D L EEE  I + Q  LKK LY RFG SI LE
Sbjct:   19 EVRREDQENINKFGRLNARLYEVRGERDAIKKKLERIDDASTELMMGSGDKVMLMLGDAFFESSEEDATEFCEAEVEKFQAVVDNLEEEESEILEEQEKLKKILYTRFGKSINLE 133          
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Match: A0A024GCX5_9STRA (Prefoldin subunit 4 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCX5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.810e-28
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    4 VRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGASVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADLKKALYARFGSSIQLE 345
            VR EDQ+ INEFGRLN R  ELQREKK L+E +D L+DA  ELM  EG  V +M+G+ FV  +EE A +Y E   EA +  +  L EEEE +  RQ  LKK LY+RFG +I LE
Sbjct:   15 VRLEDQERINEFGRLNMRLAELQREKKALQEKLDTLEDAGAELMMGEGDDVYVMMGESFVETSEESAQEYLETLTEAAKKDVQVLVEEEEKLDNRQTILKKILYSRFGDTINLE 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8673.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ4_ECTSI1.060e-4064.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V806_9STRA2.810e-4064.04Prefoldin subunit 4 n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A835Z9N6_9STRA1.380e-3858.33Prefoldin subunit 4 n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3YAJ8_HETAK9.100e-3454.31Prefoldin subunit 4 n=1 Tax=Heterosigma akashiwo T... [more]
W7TPN2_9STRA9.530e-3053.04Prefoldin subunit 4 n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A6V0ZXN8_9STRA9.590e-3053.45Prefoldin subunit 4 n=1 Tax=Skeletonema marinoi Ta... [more]
A0A6U1YJT7_TRICV1.870e-2851.30Prefoldin subunit 4 n=1 Tax=Trieres chinensis TaxI... [more]
A0A1E7F096_9STRA1.920e-2853.85Prefoldin subunit 4 n=1 Tax=Fragilariopsis cylindr... [more]
A0A7S0B128_9STRA3.330e-2852.17Prefoldin subunit 4 n=1 Tax=Minutocellus polymorph... [more]
A0A024GCX5_9STRA5.810e-2854.39Prefoldin subunit 4 n=1 Tax=Albugo candida TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8673contigP-wetherbeei_contig8673:15..1172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYJ4
Preferred namePFDN4
PFAMsPrefoldin_2
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K09550,ko:K20177
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006950,GO:0007021,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0022607,GO:0030163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033554,GO:0034243,GO:0034622,GO:0035966,GO:0035967,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051087,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0065003,GO:0065007,GO:0070887,GO:0071218,GO:0071310,GO:0071629,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons4
Evalue1.74e-41
EggNOG OGsCOG1382@1|root,KOG1760@2759|Eukaryota
Ec32 ortholog descriptionPrefoldin beta-like
Ec32 orthologEc-23_002980.1
Descriptionunfolded protein binding
Cds size351
COG categoryO
BRITEko00000,ko00001,ko03110,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187053.4689543-CDS-P-wetherbeei_contig8673:14..1071683187053.4689543-CDS-P-wetherbeei_contig8673:14..107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8673 15..107 +
1683187053.4819238-CDS-P-wetherbeei_contig8673:278..4161683187053.4819238-CDS-P-wetherbeei_contig8673:278..416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8673 279..416 +
1683187053.49245-CDS-P-wetherbeei_contig8673:785..8481683187053.49245-CDS-P-wetherbeei_contig8673:785..848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8673 786..848 +
1683187053.5025556-CDS-P-wetherbeei_contig8673:1115..11721683187053.5025556-CDS-P-wetherbeei_contig8673:1115..1172Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8673 1116..1172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8673.1.1prot_P-wetherbeei_contig8673.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8673 15..1172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8673.1.1

>prot_P-wetherbeei_contig8673.1.1 ID=prot_P-wetherbeei_contig8673.1.1|Name=mRNA_P-wetherbeei_contig8673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
QVRWEDQQCINEFGRLNTRFQELQREKKELKELVDQLDDASTELMTSEGA
SVQLMLGDCFVHCNEEYATDYCEKKQEAGQAQLDGLNEEEEGITKRQADL
KKALYARFGSSIQLEA*
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mRNA from alignment at P-wetherbeei_contig8673:15..1172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8673.1.1 ID=mRNA_P-wetherbeei_contig8673.1.1|Name=mRNA_P-wetherbeei_contig8673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig8673:15..1172+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTAAGATGGGAGGATCAGCAATGTATTAACGAGTTCGGCCGCCTCAA CACGCGGTTTCAAGAACTGCAGCGCGAGAAGAAGGAACTTAAGGTGAAAC TTGAGCTGCTTTTCCCCTTTGCTGGCAGCTTCCGATCAGATCCTTCTCTT GTACCCAACCTTTCTTCGAGCATCAGCGTTGCCGTCGGTTTATAAGTCTC TCCTGACGGCCAAACTGACTGCAGTCGCGTCGCGCCGCCGCAACAAACGC CCGGGGAGAGGCAGGAGCTGGTGGACCAGCTGGACGATGCGTCGACGGAG CTCATGACGAGCGAGGGGGCCAGCGTGCAGCTGATGCTTGGCGACTGCTT CGTGCATTGCAACGAAGAGTACGCCACGGACTACTGCGAAAAAAAGCAGG AGGTGCGTCATGAAGAGGAGCACGCATGGCTGTCTCTGTCGTTGGTCACC ATCGCTGTTTGCGTATTCGAGGTCACTGCAGTGCACGTACAACTGTGCGC GTTTTGCTTATGATTCAGATGTGCGACGTAAAGCGAGAATAATTCGATTT TGCGCGTTTCTCCTGTTTGGCCCACCACCGCGGGTTACAGAGCAGATTGT GTCTCGTCGACTATTGAGGTCGCCTTCATCTTTCTGTCTCCCCGCTCGCA CTTTTGGAACATCGGATGACGCCCTTCCTTTTTATTGTTGGGTCGGCTTT CTGCCTCGTCGCCCGCACATGAACGACGCGTTTCCTCTGCCAAACGCACA TCTTCTTCGGCTTTCCCGCAGGCGGGGCAGGCGCAGCTGGACGGGTTGAA CGAAGAGGAGGAAGGCATCACGAAGCGACAAGCGGTGAGAAGTTCCTCGC TGCTTGGTGCTGCCGCCTCGGCCGAATTTCCGCTGCAATTTCGTTTCTCA ATCTGCTCCGGTTCCCTCCGAAGGTACGCTCCATCAGGCAGATTTCTCTC CGCAATTCGCATCAGAATATTGCTTCATTCTGCGCGGGTTTCGCTCTAAT TGCTACGAAAACTCCTTTGCGACCGAACTTGTGCCTGATCTCTCTCTCTG GCTTCTCCTCCTCTTCTGCCTTCTCCGGCGGACTGGCGGCGGCTGCCGCA GGACTTGAAAAAGGCGCTGTATGCACGGTTTGGGTCTTCCATACAGCTGG AAGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8673:15..1172+

>mRNA_P-wetherbeei_contig8673.1.1 ID=mRNA_P-wetherbeei_contig8673.1.1|Name=mRNA_P-wetherbeei_contig8673.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig8673:15..1172+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGTAAGATGGGAGGATCAGCAATGTATTAACGAGTTCGGCCGCCTCAA
CACGCGGTTTCAAGAACTGCAGCGCGAGAAGAAGGAACTTAAGGAGCTGG
TGGACCAGCTGGACGATGCGTCGACGGAGCTCATGACGAGCGAGGGGGCC
AGCGTGCAGCTGATGCTTGGCGACTGCTTCGTGCATTGCAACGAAGAGTA
CGCCACGGACTACTGCGAAAAAAAGCAGGAGGCGGGGCAGGCGCAGCTGG
ACGGGTTGAACGAAGAGGAGGAAGGCATCACGAAGCGACAAGCGGACTTG
AAAAAGGCGCTGTATGCACGGTTTGGGTCTTCCATACAGCTGGAAGCATG
A
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