mRNA_P-wetherbeei_contig8669.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8669.1.1
Unique NamemRNA_P-wetherbeei_contig8669.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8669.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8669contigP-wetherbeei_contig8669:974..2162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size902
Hectar predicted targeting categorysignal peptide
Exons2
Cds size594
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187053.0959532-UTR-P-wetherbeei_contig8669:973..11021683187053.0959532-UTR-P-wetherbeei_contig8669:973..1102Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8669 974..1102 -
1683187053.1272964-UTR-P-wetherbeei_contig8669:1983..21621683187053.1272964-UTR-P-wetherbeei_contig8669:1983..2162Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8669 1984..2162 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187053.106818-CDS-P-wetherbeei_contig8669:1102..12971683187053.106818-CDS-P-wetherbeei_contig8669:1102..1297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8669 1103..1297 -
1683187053.1168342-CDS-P-wetherbeei_contig8669:1584..19831683187053.1168342-CDS-P-wetherbeei_contig8669:1584..1983Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8669 1585..1983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8669.1.1prot_P-wetherbeei_contig8669.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8669 1103..1983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8669.1.1

>prot_P-wetherbeei_contig8669.1.1 ID=prot_P-wetherbeei_contig8669.1.1|Name=mRNA_P-wetherbeei_contig8669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=198bp
MTARLPFAAPTARIMVLLPCMIVATVSSVGGGRGEWRHPRQFRATECLEP
LFSVVGRGIEIPRRRFDVVAGCGRAENVLGHSTRKNLPPSPRLSLSPSPF
SVCRYQLDPAASWDNGKPPFFLSSGKINTAHADAVFLWDPTILRTLINQC
LSNDVSECDPADVGLPPKSDLSDRKDAAASYAPIPAMYQPGPVMPPA*
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mRNA from alignment at P-wetherbeei_contig8669:974..2162-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8669.1.1 ID=mRNA_P-wetherbeei_contig8669.1.1|Name=mRNA_P-wetherbeei_contig8669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1189bp|location=Sequence derived from alignment at P-wetherbeei_contig8669:974..2162- (Phaeothamnion wetherbeei SAG_119_79)
GGCAACCTGGCCTACCCGACCATCACCGACGGCCCCTGCCCGGCGACGCA
CCCGGTTCGCATCCCCGAGGGCAAGATCGCGGCCAGGTGCTGTTTTGCGC
TGATTGTTACGGCCTGCGGCTGCAAGAGGCATTCTGTCTTCTCTTTCGTT
TTCCAAGGGCCAGGTTTGTTTGATAGGCCATGACTGCAAGGCTTCCTTTT
GCGGCGCCAACGGCAAGGATTATGGTGCTCCTTCCTTGCATGATAGTGGC
GACAGTGTCCTCGGTTGGCGGCGGTCGCGGGGAGTGGCGGCATCCTCGCC
AGTTTCGTGCAACCGAATGTCTTGAGCCGTTGTTTTCAGTCGTCGGACGT
GGTATCGAGATTCCAAGGCGGCGTTTCGACGTGGTAGCCGGCTGCGGGAG
AGCCGAGAATGTCTTGGGCCATTCAACCCGCAAAAACCTCCCACCCTCTC
CTCGTCTCTCTCTATCTCCGAGTCCTTTTTCTGTGTGCAGGTACCAGCTG
GACCCGGCTGCGTCCTGGGACAACGGCAAACCCCCGTTCTTCCTGTCCTC
CGGCAAGATAAACACGGCGCATGCTGATGTAAGTTAAGGGACGGGAGAAA
AGAAGTGAGGAACCGCTCGGAGTCCTTCCTTTTCTTGCAGCGATTGTGGT
CTCCAGTGGCTGGGCTGTCAGTGAGACATCGCTGCGCTCACGAAACTTTG
TTTTGGCCAGCTGCTTCACGCCCAGCTTGGGCCTCTTTCTCGGAGACGAT
TCTTGTCGTTCCCGTTCCGATCCTGGTCACCTTCCTTCCGCGCTTAACCC
GCCTCTCCGCCCTCCGATCGCACACGATATGTACCTGGAAACCCTCCCAC
CGAACCACAACGCAGGCTGTGTTCCTGTGGGACCCGACGATTCTCAGGAC
GCTCATCAACCAGTGCCTCAGCAACGACGTCTCCGAATGCGATCCGGCCG
ACGTCGGCTTGCCGCCGAAGAGCGACCTTTCGGACCGCAAGGATGCCGCT
GCGAGCTACGCGCCCATTCCGGCCATGTACCAGCCGGGCCCCGTCATGCC
GCCGGCGTAGATCGGCGCCGGCTGCTTCAGCACGCCGGTGGTTGCGGCGG
CGGCTTTTCGAGCTTCCGAGGAGGGAGGGCTCGGTCTCGGGCCGGCGGCG
ATCTTGCACAACCCTTGCCAGATTGACGCCCTCGTGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8669:974..2162-

>mRNA_P-wetherbeei_contig8669.1.1 ID=mRNA_P-wetherbeei_contig8669.1.1|Name=mRNA_P-wetherbeei_contig8669.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=594bp|location=Sequence derived from alignment at P-wetherbeei_contig8669:974..2162- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCAAGGCTTCCTTTTGCGGCGCCAACGGCAAGGATTATGGTGCT
CCTTCCTTGCATGATAGTGGCGACAGTGTCCTCGGTTGGCGGCGGTCGCG
GGGAGTGGCGGCATCCTCGCCAGTTTCGTGCAACCGAATGTCTTGAGCCG
TTGTTTTCAGTCGTCGGACGTGGTATCGAGATTCCAAGGCGGCGTTTCGA
CGTGGTAGCCGGCTGCGGGAGAGCCGAGAATGTCTTGGGCCATTCAACCC
GCAAAAACCTCCCACCCTCTCCTCGTCTCTCTCTATCTCCGAGTCCTTTT
TCTGTGTGCAGGTACCAGCTGGACCCGGCTGCGTCCTGGGACAACGGCAA
ACCCCCGTTCTTCCTGTCCTCCGGCAAGATAAACACGGCGCATGCTGATG
CTGTGTTCCTGTGGGACCCGACGATTCTCAGGACGCTCATCAACCAGTGC
CTCAGCAACGACGTCTCCGAATGCGATCCGGCCGACGTCGGCTTGCCGCC
GAAGAGCGACCTTTCGGACCGCAAGGATGCCGCTGCGAGCTACGCGCCCA
TTCCGGCCATGTACCAGCCGGGCCCCGTCATGCCGCCGGCGTAG
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