mRNA_P-wetherbeei_contig8659.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8659.3.1
Unique NamemRNA_P-wetherbeei_contig8659.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8659.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8659contigP-wetherbeei_contig8659:917..1436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size483
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187052.5149114-UTR-P-wetherbeei_contig8659:916..10071683187052.5149114-UTR-P-wetherbeei_contig8659:916..1007Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8659 917..1007 -
1683187052.5591547-UTR-P-wetherbeei_contig8659:1338..14361683187052.5591547-UTR-P-wetherbeei_contig8659:1338..1436Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8659 1339..1436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187052.5276577-CDS-P-wetherbeei_contig8659:1007..10491683187052.5276577-CDS-P-wetherbeei_contig8659:1007..1049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8659 1008..1049 -
1683187052.5463479-CDS-P-wetherbeei_contig8659:1086..13381683187052.5463479-CDS-P-wetherbeei_contig8659:1086..1338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8659 1087..1338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8659.3.1prot_P-wetherbeei_contig8659.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8659 1008..1338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8659.3.1

>prot_P-wetherbeei_contig8659.3.1 ID=prot_P-wetherbeei_contig8659.3.1|Name=mRNA_P-wetherbeei_contig8659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MIVDRQGELTRVDGRVCDRNELFKGRQAKEGAGRKRGRENGIAKPVKERI
QRKTRTFHPICAPRPAHHASPPVAAQSKAAAAPASASGSSITSSGIR*
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mRNA from alignment at P-wetherbeei_contig8659:917..1436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8659.3.1 ID=mRNA_P-wetherbeei_contig8659.3.1|Name=mRNA_P-wetherbeei_contig8659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=520bp|location=Sequence derived from alignment at P-wetherbeei_contig8659:917..1436- (Phaeothamnion wetherbeei SAG_119_79)
GCATTTCATAGGACGAAAATACTGCAGGGAAAGCATAGACGAAGACTGGG
TAACCGCGCGTTTGAAGCGAACTCAAGTGAAGGGAAAATAGATCATTCAT
GATAGTAGACAGACAGGGTGAACTGACACGGGTCGACGGCCGGGTTTGTG
ATAGGAATGAGCTCTTCAAGGGAAGGCAGGCGAAGGAGGGTGCTGGGAGG
AAGCGCGGAAGGGAAAACGGAATAGCTAAACCTGTAAAAGAAAGAATACA
AAGGAAAACTAGAACGTTCCACCCGATCTGTGCGCCTCGACCAGCTCACC
ATGCCTCGCCACCTGTGGCGGCCCAGTCCAAGGCGGCGGCGGCGCCGGCG
GTGGCGGCGGCGGCGCCGGCGGTGGCGGCGGCGGCAGAGTGCAAGCGGCT
CCAGCATAACGTCGTCAGGAATCCGTTAAAGCTTCCTCCATGGGGGCCAT
ACCAACCAAAACCACGTTCCACCTCCAACATTGGCCATAGCACCGGCCGC
CGCCACTACCGCAGTAGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8659:917..1436-

>mRNA_P-wetherbeei_contig8659.3.1 ID=mRNA_P-wetherbeei_contig8659.3.1|Name=mRNA_P-wetherbeei_contig8659.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig8659:917..1436- (Phaeothamnion wetherbeei SAG_119_79)
ATGATAGTAGACAGACAGGGTGAACTGACACGGGTCGACGGCCGGGTTTG
TGATAGGAATGAGCTCTTCAAGGGAAGGCAGGCGAAGGAGGGTGCTGGGA
GGAAGCGCGGAAGGGAAAACGGAATAGCTAAACCTGTAAAAGAAAGAATA
CAAAGGAAAACTAGAACGTTCCACCCGATCTGTGCGCCTCGACCAGCTCA
CCATGCCTCGCCACCTGTGGCGGCCCAGTCCAAGGCGGCGGCGGCGCCGG
CGAGTGCAAGCGGCTCCAGCATAACGTCGTCAGGAATCCGTTAA
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