mRNA_P-wetherbeei_contig8641.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8641.2.1
Unique NamemRNA_P-wetherbeei_contig8641.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8641.2.1 vs. uniprot
Match: UPI001E611567 (hypothetical protein n=1 Tax=Martelella mediterranea TaxID=293089 RepID=UPI001E611567)

HSP 1 Score: 111 bits (277), Expect = 4.700e-28
Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:    4 LYPAIGALILNWALIESVLEKWVATIYHCADGKSIDAEIPRMYSPKVKFLRRCFNRLNALESFKPKAIEYLDEADRLAEIKSIVTHGAVSSFDPKSEKIEFTRLDVDRQRSIHTVRSNQLSVTDIMNAG 390
            LY  +G +I NW  +E+ L+ W A  YH   G  ++ E+PR +S KVKFLR+CFNRL++L  FK +A+  + +++ L+E++  V HG +S FD   E   F ++D+   +  H +    ++   ++ AG
Sbjct:   16 LYAMVGMVIANWTFVENSLDAWAAIAYHDHGGNKVEPELPRQFSRKVKFLRKCFNRLSSLAPFKEEALSLISKSEGLSEVRHYVAHGVLSDFDQSDESFRFIKIDMTSDKKQHIIGELHITAVKLLQAG 144
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BLAST of mRNA_P-wetherbeei_contig8641.2.1 vs. uniprot
Match: A0A7W2C602_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2C602_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 4.610e-18
Identity = 39/154 (25.32%), Postives = 80/154 (51.95%), Query Frame = 1 
Query:    4 LYPAIGALILNWALIESVLEKWVATIYHCADGKSIDAEIPRMYSPKVKFLRRCFNRLNALESFKPKAIEYLDEADRLAEIKSIVTHGAVSSFDPKSEKIEFTRLDVDRQRSIHTVRSNQLSVTDIMNAGNAGILLCQNVVTLGHSMLSSLSGDQ 465
            L+  +G +I++W  +E+ ++  VA  +H   G ++  ++P+ +S K  FL+RC   L +L  FKP+ +  +++A+ LA  +  V HG ++ FDP      F ++D    +    +   ++  T ++ AG       +++   G S+   L G++
Sbjct:   17 LFSCVGMIIVSWTFLENTIDAIVAIAFHDHGGDAVSTKLPKQFSTKTAFLKRCCEELQSLSEFKPEILYLVEKAEELARTRHYVAHGVLTEFDPADASFVFLKIDTTADKRQQVIGHMRILGTALVKAGTD----VKDLAKQGQSLTQRLLGEK 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8641.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001E6115674.700e-2835.66hypothetical protein n=1 Tax=Martelella mediterran... [more]
A0A7W2C602_9HYPH4.610e-1825.32Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8641contigP-wetherbeei_contig8641:2069..2539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.6600504-CDS-P-wetherbeei_contig8641:2068..25391683187051.6600504-CDS-P-wetherbeei_contig8641:2068..2539Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8641 2069..2539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8641.2.1prot_P-wetherbeei_contig8641.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8641 2069..2539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8641.2.1

>prot_P-wetherbeei_contig8641.2.1 ID=prot_P-wetherbeei_contig8641.2.1|Name=mRNA_P-wetherbeei_contig8641.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
KLYPAIGALILNWALIESVLEKWVATIYHCADGKSIDAEIPRMYSPKVKF
LRRCFNRLNALESFKPKAIEYLDEADRLAEIKSIVTHGAVSSFDPKSEKI
EFTRLDVDRQRSIHTVRSNQLSVTDIMNAGNAGILLCQNVVTLGHSMLSS
LSGDQN*
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mRNA from alignment at P-wetherbeei_contig8641:2069..2539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8641.2.1 ID=mRNA_P-wetherbeei_contig8641.2.1|Name=mRNA_P-wetherbeei_contig8641.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig8641:2069..2539- (Phaeothamnion wetherbeei SAG_119_79)
AAGCTCTATCCGGCGATTGGGGCGTTGATACTCAATTGGGCGCTCATTGA
GTCCGTCTTGGAGAAGTGGGTTGCAACGATTTATCACTGCGCGGACGGAA
AGAGCATCGACGCCGAAATCCCGAGGATGTATTCGCCCAAGGTGAAGTTT
CTTCGTAGATGTTTCAACAGGCTGAACGCGCTGGAATCATTCAAGCCCAA
AGCCATTGAATATCTTGATGAGGCCGATCGCCTTGCGGAGATAAAATCAA
TCGTTACGCATGGCGCAGTTTCAAGCTTTGATCCGAAGTCGGAGAAAATC
GAATTCACGCGACTTGACGTAGATCGGCAGCGATCAATCCATACCGTTCG
TTCCAATCAACTGTCGGTAACCGATATCATGAACGCCGGTAATGCGGGCA
TTCTACTGTGTCAGAACGTTGTAACGCTCGGGCACTCCATGCTTTCAAGC
TTATCTGGCGACCAAAATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8641:2069..2539-

>mRNA_P-wetherbeei_contig8641.2.1 ID=mRNA_P-wetherbeei_contig8641.2.1|Name=mRNA_P-wetherbeei_contig8641.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig8641:2069..2539- (Phaeothamnion wetherbeei SAG_119_79)
AAGCTCTATCCGGCGATTGGGGCGTTGATACTCAATTGGGCGCTCATTGA
GTCCGTCTTGGAGAAGTGGGTTGCAACGATTTATCACTGCGCGGACGGAA
AGAGCATCGACGCCGAAATCCCGAGGATGTATTCGCCCAAGGTGAAGTTT
CTTCGTAGATGTTTCAACAGGCTGAACGCGCTGGAATCATTCAAGCCCAA
AGCCATTGAATATCTTGATGAGGCCGATCGCCTTGCGGAGATAAAATCAA
TCGTTACGCATGGCGCAGTTTCAAGCTTTGATCCGAAGTCGGAGAAAATC
GAATTCACGCGACTTGACGTAGATCGGCAGCGATCAATCCATACCGTTCG
TTCCAATCAACTGTCGGTAACCGATATCATGAACGCCGGTAATGCGGGCA
TTCTACTGTGTCAGAACGTTGTAACGCTCGGGCACTCCATGCTTTCAAGC
TTATCTGGCGACCAAAATTGA
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