mRNA_P-wetherbeei_contig8633.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8633.3.1
Unique NamemRNA_P-wetherbeei_contig8633.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: A0A521YLC6_9PROT (Ring-hydroxylating dioxygenase subunit beta n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YLC6_9PROT)

HSP 1 Score: 238 bits (608), Expect = 4.420e-78
Identity = 111/169 (65.68%), Postives = 134/169 (79.29%), Query Frame = 1
Query:    1 MYAGFDMKAPDPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            MY G+DM   D +  RELR E+EEFH +YC  LD   ++ W  +F +DA+YR+TARENADAGL VGLVYA+ + MIRDRAFA+ HTQM+APR MQH  SNVR++      +KA++NYLLLQTLVDGPTT+HQ+GRYYDTFVR  GRLL++ERQCVYDT LIANDLV PV
Sbjct:    1 MYPGYDMTPVDAREARELRMEIEEFHADYCWTLDCGDVERWPDYFTDDAVYRITARENADAGLPVGLVYADSKAMIRDRAFALKHTQMYAPRSMQHFVSNVRVLQAGVAGVKARSNYLLLQTLVDGPTTLHQAGRYYDTFVRANGRLLLKERQCVYDTVLIANDLVLPV 169          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: A0A1F2R5T2_9BACT (Ring-hydroxylating dioxygenase subunit beta n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 TaxID=1797180 RepID=A0A1F2R5T2_9BACT)

HSP 1 Score: 232 bits (592), Expect = 1.250e-75
Identity = 107/167 (64.07%), Postives = 133/167 (79.64%), Query Frame = 1
Query:    7 AGFDMKAPDPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            AG+++ A + +  RE R ++E+FH  YCN LD   LD W  FF EDA Y VTAREN +A L VGLVYAEGR MIRDRA+AI HT MFAPRY+QH  SNV ++++ G++I+AQ+NYLLLQTLV+ PTTI Q+GRYYDTFVR G RLL++ER+CVYDTTLIAND+V P+
Sbjct:    4 AGYEIAAIEARAAREARADIEDFHNLYCNTLDLGNLDAWPDFFTEDAFYIVTARENVEANLAVGLVYAEGRAMIRDRAYAIKHTMMFAPRYLQHFVSNVTVLSISGNEIRAQSNYLLLQTLVEAPTTIQQAGRYYDTFVRNGERLLLKERRCVYDTTLIANDIVLPI 170          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: A0A519PBN5_9BURK (Ring-hydroxylating dioxygenase subunit beta n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A519PBN5_9BURK)

HSP 1 Score: 227 bits (579), Expect = 1.230e-73
Identity = 106/167 (63.47%), Postives = 135/167 (80.84%), Query Frame = 1
Query:   10 GFDMKAPDPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGD-QIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            GF+  + DP   RELRF VEEF+ EYC VLD   +++W  FF +DA+YR+TARENADAG+RVGLVYAEG+GM++DRA +I  TQMFAPRY  H+T NVR++A+  D +  AQ++++LLQTLVDGPTT+H +GRY+D FVR+G  LL+RERQ VYDTT+IA DLVYPV
Sbjct:    5 GFEAASIDPAAARELRFAVEEFNAEYCAVLDSGEVEQWPEFFTQDAIYRITARENADAGMRVGLVYAEGKGMLQDRAVSIARTQMFAPRYNLHVTGNVRVLALQEDGEFSAQSSFMLLQTLVDGPTTLHLAGRYFDRFVREGNSLLLRERQAVYDTTMIATDLVYPV 171          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: A0A5N7RMX3_9BURK (Ring-hydroxylating dioxygenase subunit beta n=1 Tax=Alcaligenaceae bacterium SAGV5 TaxID=2558245 RepID=A0A5N7RMX3_9BURK)

HSP 1 Score: 217 bits (553), Expect = 1.010e-69
Identity = 100/155 (64.52%), Postives = 127/155 (81.94%), Query Frame = 1
Query:   43 VRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            +RELR ++E+FH+ YC +LD   LD+W   F EDA+YRVT+REN DAGL  GLVYAEGR M+RDRA+AI +TQMFAPR + H  +NVR++  +G  + A+ANYLLLQTL++GPTT+HQ+G Y+D FVR+ GRLL+RERQCVYDT L+ANDLVYPV
Sbjct:   14 LRELRADIEDFHSAYCAMLDEGHLDQWPDHFTEDAIYRVTSRENFDAGLPAGLVYAEGRTMLRDRAYAIGNTQMFAPRTVLHYVANVRVLGAEGGCVVARANYLLLQTLIEGPTTLHQAGCYHDVFVRRAGRLLLRERQCVYDTALVANDLVYPV 168          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: UPI001D02F9F1 (nuclear transport factor 2 family protein n=1 Tax=Pusillimonas sp. CC-YST705 TaxID=2755040 RepID=UPI001D02F9F1)

HSP 1 Score: 213 bits (541), Expect = 8.470e-68
Identity = 102/160 (63.75%), Postives = 126/160 (78.75%), Query Frame = 1
Query:   31 DPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGD-QIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            D  T RELR ++E FH EYC  LD   +++W  FF EDALYRVT+RENA+  + VGLVYAEGR M+ DRA AI  TQMFAPRY QH+ SNVRIV    D +I+ +AN+LLLQTLV+GP+T+H +GRYYDTFVR+ GRLL++ERQ +YDT ++ANDLVYPV
Sbjct:   16 DAATSRELRLDLEAFHAEYCAALDNREVEKWPEFFCEDALYRVTSRENAEHNMLVGLVYAEGRDMMIDRAIAIARTQMFAPRYTQHMVSNVRIVETHDDGRIETEANFLLLQTLVEGPSTVHLAGRYYDTFVREQGRLLLQERQVIYDTAILANDLVYPV 175          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: B3R8Y5_CUPTR (Putative ring-hydroxylating dioxygenase, beta subunit n=48 Tax=Burkholderiaceae TaxID=119060 RepID=B3R8Y5_CUPTR)

HSP 1 Score: 209 bits (531), Expect = 2.460e-66
Identity = 104/155 (67.10%), Postives = 122/155 (78.71%), Query Frame = 1
Query:   49 ELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIV--AVDGDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            ELR E+E FH +YC  LD   ++ W  FF +DALYR+TARENA+ GL VGLVYAEG GM+RDRA AI +TQMFAPRY  HL +N R+     DGD I AQAN++LLQTLV+GPTTIH +G Y+D F RQGGRLL+RERQ VYDTT+IANDLVYPV
Sbjct:   18 ELRLEIEAFHADYCAALDAGMVEHWPRFFTDDALYRITARENAERGLPVGLVYAEGIGMMRDRAAAIANTQMFAPRYHLHLVTNTRVSDETADGD-IVAQANFMLLQTLVEGPTTIHLAGTYHDRFRRQGGRLLLRERQVVYDTTIIANDLVYPV 171          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: UPI00124BACAE (aromatic-ring-hydroxylating dioxygenase subunit beta n=1 Tax=Lacisediminimonas profundi TaxID=2603856 RepID=UPI00124BACAE)

HSP 1 Score: 208 bits (530), Expect = 3.500e-66
Identity = 103/167 (61.68%), Postives = 127/167 (76.05%), Query Frame = 1
Query:   10 GFDMKAPDPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGD-QIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            G++    D  + RELR  VE+F+TEYC VLD   +++W  FF EDA+YRVTARENADA L VGLVYAEGR M+ DRA AI+ TQMFAPR   HL  NVR++  + D    AQ+N++LLQTLV+GPTTIH +GRYYD FVR+GG L ++ERQ VYDTT+IA D+VYPV
Sbjct:    5 GYEAVEIDRASSRELRAAVEDFNTEYCAVLDSGDIEKWPDFFTEDAIYRVTARENADANLPVGLVYAEGRAMLHDRAVAISRTQMFAPRTTLHLCGNVRVMRQEPDGSFIAQSNFILLQTLVEGPTTIHLAGRYYDRFVREGGELKLKERQAVYDTTMIATDVVYPV 171          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: A0A7Y9IXF2_9BURK (3-phenylpropionate/cinnamic acid dioxygenase small subunit n=2 Tax=Pigmentiphaga litoralis TaxID=516702 RepID=A0A7Y9IXF2_9BURK)

HSP 1 Score: 206 bits (525), Expect = 2.220e-65
Identity = 97/159 (61.01%), Postives = 122/159 (76.73%), Query Frame = 1
Query:   34 PKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVDGD-QIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            P    ELR  VE FH +YC  LD  +L++W  FF E  +YRVTARENA+ GL VGLVY EG+GM++DRA AI  TQMFAPRYM HL +N R+ A + D  I AQAN+LL+QTLV+GPTT+H +G Y+D FVR+G RLL+++RQ +YD+T+IANDLVYPV
Sbjct:   16 PARALELRQHVETFHADYCATLDSGSLEDWPEFFTEQGIYRVTARENAELGLPVGLVYCEGKGMLQDRAVAINRTQMFAPRYMLHLVTNTRVTAEEADGAIVAQANFLLMQTLVEGPTTVHMAGTYHDVFVREGDRLLLKDRQVIYDSTIIANDLVYPV 174          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: A0A6P2E448_9BURK (Salicylate 5-hydroxylase, small oxygenase component n=1 Tax=Variovorax sp. RA8 TaxID=662548 RepID=A0A6P2E448_9BURK)

HSP 1 Score: 204 bits (520), Expect = 1.280e-64
Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 1
Query:   31 DPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIVAVD-GDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            DP     LR E+E+F+ EYC VLD   ++ W  FFAEDA YRVTARENA+ GL VGLVYA+GRGM+ DRA AI  TQMFAPRY  HL +N R+ +     +I AQAN+LLLQTLV+GP+TIH +G YYD FVR  G LL++ERQ +YDTT+IANDLVYP+
Sbjct:   15 DPVRALALRHEIEDFNAEYCAVLDAGHVEAWPDFFAEDATYRVTARENAELGLPVGLVYAQGRGMMHDRAVAIARTQMFAPRYNLHLVTNTRVTSESTSGEIAAQANFLLLQTLVEGPSTIHMAGTYYDRFVRVDGGLLLKERQAIYDTTIIANDLVYPL 174          
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Match: Q46UQ1_CUPPJ (Aromatic-ring-hydroxylating dioxygenase, beta subunit n=6 Tax=Cupriavidus TaxID=106589 RepID=Q46UQ1_CUPPJ)

HSP 1 Score: 204 bits (519), Expect = 1.820e-64
Identity = 101/155 (65.16%), Postives = 120/155 (77.42%), Query Frame = 1
Query:   49 ELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDALYRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSNVRIV--AVDGDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIRERQCVYDTTLIANDLVYPV 507
            ELR E+E FH EYC VLD   +++W  FF EDALYR+TARENA+  L VGLVYAEG GM+RDRA AI +TQMFAPRY  HL +N R+     DGD I AQ+N+LLLQTLV+GPTT+H +G Y+D F R G  LL+RERQ +YDTT+IANDLVYPV
Sbjct:   21 ELRLEIENFHAEYCAVLDAGLVEQWPRFFTEDALYRITARENAELNLPVGLVYAEGIGMMRDRAAAIANTQMFAPRYNLHLVTNTRVTDETADGD-IVAQSNFLLLQTLVEGPTTMHMAGTYHDRFQRTGNGLLLRERQVIYDTTIIANDLVYPV 174          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8633.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YLC6_9PROT4.420e-7865.68Ring-hydroxylating dioxygenase subunit beta n=1 Ta... [more]
A0A1F2R5T2_9BACT1.250e-7564.07Ring-hydroxylating dioxygenase subunit beta n=1 Ta... [more]
A0A519PBN5_9BURK1.230e-7363.47Ring-hydroxylating dioxygenase subunit beta n=2 Ta... [more]
A0A5N7RMX3_9BURK1.010e-6964.52Ring-hydroxylating dioxygenase subunit beta n=1 Ta... [more]
UPI001D02F9F18.470e-6863.75nuclear transport factor 2 family protein n=1 Tax=... [more]
B3R8Y5_CUPTR2.460e-6667.10Putative ring-hydroxylating dioxygenase, beta subu... [more]
UPI00124BACAE3.500e-6661.68aromatic-ring-hydroxylating dioxygenase subunit be... [more]
A0A7Y9IXF2_9BURK2.220e-6561.013-phenylpropionate/cinnamic acid dioxygenase small... [more]
A0A6P2E448_9BURK1.280e-6462.50Salicylate 5-hydroxylase, small oxygenase componen... [more]
Q46UQ1_CUPPJ1.820e-6465.16Aromatic-ring-hydroxylating dioxygenase, beta subu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8633contigP-wetherbeei_contig8633:1373..1882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog381666.H16_B0800
PFAMsRing_hydroxyl_B,SnoaL_4
Model size510
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00192
KEGG koko:K16320
KEGG ReactionR00823,R00825
KEGG Pathwayko00627,ko01120,map00627,map01120
KEGG ModuleM00637
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-68
EggNOG OGsCOG5517@1|root,COG5517@2|Bacteria,1RCCB@1224|Proteobacteria,2W016@28216|Betaproteobacteria,1KD9G@119060|Burkholderiaceae
EC1.14.12.1
DescriptionRing hydroxylating beta subunit
Cds size510
COG categoryQ
BRITEbr01602,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187051.0621939-CDS-P-wetherbeei_contig8633:1372..18821683187051.0621939-CDS-P-wetherbeei_contig8633:1372..1882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8633 1373..1882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8633.3.1prot_P-wetherbeei_contig8633.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8633 1373..1882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8633.3.1

>prot_P-wetherbeei_contig8633.3.1 ID=prot_P-wetherbeei_contig8633.3.1|Name=mRNA_P-wetherbeei_contig8633.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MYAGFDMKAPDPKTVRELRFEVEEFHTEYCNVLDRAALDEWIGFFAEDAL
YRVTARENADAGLRVGLVYAEGRGMIRDRAFAITHTQMFAPRYMQHLTSN
VRIVAVDGDQIKAQANYLLLQTLVDGPTTIHQSGRYYDTFVRQGGRLLIR
ERQCVYDTTLIANDLVYPV*
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mRNA from alignment at P-wetherbeei_contig8633:1373..1882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8633.3.1 ID=mRNA_P-wetherbeei_contig8633.3.1|Name=mRNA_P-wetherbeei_contig8633.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig8633:1373..1882- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCCGGCTTCGACATGAAGGCACCCGACCCGAAAACCGTGCGCGA GCTGCGCTTCGAGGTCGAGGAATTCCACACCGAGTACTGCAACGTGCTCG ATCGCGCGGCCCTTGATGAGTGGATCGGGTTCTTCGCCGAGGACGCGCTC TATCGCGTGACCGCGAGGGAGAACGCGGACGCCGGCCTGCGGGTGGGGCT CGTCTATGCGGAAGGACGCGGCATGATCCGCGACCGCGCCTTCGCCATCA CGCACACGCAGATGTTCGCGCCGCGCTACATGCAGCACCTGACGAGCAAC GTGAGGATCGTGGCGGTCGATGGCGACCAGATCAAGGCCCAGGCCAATTA CCTGCTGTTGCAGACCCTGGTCGACGGCCCGACCACGATCCACCAGTCCG GGCGCTATTACGACACGTTCGTGCGCCAGGGCGGGCGGCTGCTGATCCGC GAGCGCCAGTGCGTGTACGACACGACGCTCATCGCCAACGACCTCGTGTA CCCGGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8633:1373..1882-

>mRNA_P-wetherbeei_contig8633.3.1 ID=mRNA_P-wetherbeei_contig8633.3.1|Name=mRNA_P-wetherbeei_contig8633.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig8633:1373..1882- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCCGGCTTCGACATGAAGGCACCCGACCCGAAAACCGTGCGCGA
GCTGCGCTTCGAGGTCGAGGAATTCCACACCGAGTACTGCAACGTGCTCG
ATCGCGCGGCCCTTGATGAGTGGATCGGGTTCTTCGCCGAGGACGCGCTC
TATCGCGTGACCGCGAGGGAGAACGCGGACGCCGGCCTGCGGGTGGGGCT
CGTCTATGCGGAAGGACGCGGCATGATCCGCGACCGCGCCTTCGCCATCA
CGCACACGCAGATGTTCGCGCCGCGCTACATGCAGCACCTGACGAGCAAC
GTGAGGATCGTGGCGGTCGATGGCGACCAGATCAAGGCCCAGGCCAATTA
CCTGCTGTTGCAGACCCTGGTCGACGGCCCGACCACGATCCACCAGTCCG
GGCGCTATTACGACACGTTCGTGCGCCAGGGCGGGCGGCTGCTGATCCGC
GAGCGCCAGTGCGTGTACGACACGACGCTCATCGCCAACGACCTCGTGTA
CCCGGTCTGA
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