mRNA_P-wetherbeei_contig8625.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8625.3.1
Unique NamemRNA_P-wetherbeei_contig8625.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A3C0TYM7_9PROT (Flagellar biosynthetic protein FliQ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYM7_9PROT)

HSP 1 Score: 124 bits (311), Expect = 2.180e-35
Identity = 74/87 (85.06%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL 261
            M AND++D+ARDAI+VMLQVS+PVM+VGL+XXXXXXX QALTQIQEMTLTFVPKIIAIFASL+LFMPFMGRVM+D M+RIAERIANL
Sbjct:    1 MNANDIMDIARDAIMVMLQVSSPVMLVGLLXXXXXXXFQALTQIQEMTLTFVPKIIAIFASLMLFMPFMGRVMNDFMIRIAERIANL 87
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A351T1V0_9PROT (Flagellar biosynthetic protein FliQ n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T1V0_9PROT)

HSP 1 Score: 103 bits (258), Expect = 2.610e-27
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL 261
            M   DVLDV RDAI VMLQVS PVM+VGL         QALTQIQEMTLTFVPKIIAIF SLL+F+PFMG+V+D LM RIAERI  L
Sbjct:    1 MGPADVLDVGRDAIYVMLQVSAPVMLVGLGVGLIIALFQALTQIQEMTLTFVPKIIAIFVSLLIFLPFMGQVLDGLMGRIAERIIGL 87
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A2E1CXR9_9PROT (Flagellar biosynthetic protein FliQ n=1 Tax=Kordiimonas sp. TaxID=1970157 RepID=A0A2E1CXR9_9PROT)

HSP 1 Score: 94.7 bits (234), Expect = 1.210e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL 261
            M+  DV+DVARDAI V+LQVS PVM++ L+        QALTQIQEMTLTFVPKIIAIF +L LF+PFMG  +  LM R++ERI  L
Sbjct:    1 MDGVDVIDVARDAIWVLLQVSAPVMVIALLVGLLISLFQALTQIQEMTLTFVPKIIAIFLALFLFLPFMGETLAGLMQRLSERIIGL 87
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A2A4TF81_9PROT (Flagellar biosynthetic protein FliQ n=3 Tax=root TaxID=1 RepID=A0A2A4TF81_9PROT)

HSP 1 Score: 94.4 bits (233), Expect = 1.720e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL 261
            M   DVLD+A++AI V+++VS PVMMV L+        QALTQIQEMTLTFVPKIIAIF SL +F+PFMG+ + D M  IAERI NL
Sbjct:    1 MNGADVLDIAQEAIWVLIKVSGPVMMVALLVGLTIALFQALTQIQEMTLTFVPKIIAIFVSLFIFLPFMGQTLADFMELIAERIMNL 87
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A5A7MT18_9PROT (Flagellar biosynthetic protein FliQ n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A5A7MT18_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 6.980e-23
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIAN 258
            M   D+LDVARDAI  +L VS PVM VGL         QALTQIQEMTLTFVPKIIAIF SLLLF+P MG  M DLM+R+ +R+A+
Sbjct:    1 MNGADILDVARDAIYTLLIVSGPVMAVGLGVGLIIALFQALTQIQEMTLTFVPKIIAIFLSLLLFLPLMGAQMGDLMMRLMDRVAS 86
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A2A4UJJ1_9PROT (Flagellar biosynthetic protein FliQ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2A4UJJ1_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 6.980e-23
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL 261
            M   +VLDVAR++I V+++VS PVM+V L         QALTQIQEMTLTFVPKIIAIF SL +F+PFMG+ M D M  IAERI NL
Sbjct:    1 MNGAEVLDVARESIWVLIKVSGPVMLVALSVGLTIALFQALTQIQEMTLTFVPKIIAIFISLFIFLPFMGQTMGDFMTLIAERIINL 87
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A850KU35_9PROT (Flagellar biosynthetic protein FliQ n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A850KU35_9PROT)

HSP 1 Score: 92.0 bits (227), Expect = 1.410e-22
Identity = 50/86 (58.14%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIAN 258
            ME+ DVL+VARDA+  +L  S P++ VGL         Q+LTQ+QEMTLTFVPKI+A+FA+LLLFMP MGR +  LM+RI+ERI +
Sbjct:    1 MESGDVLEVARDAVTTLLMTSGPILAVGLTIGLIIAFFQSLTQLQEMTLTFVPKIVAVFAALLLFMPLMGRNLSALMLRISERIIS 86
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A3A0F4Y5_9PROT (Flagellar biosynthetic protein FliQ n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0F4Y5_9PROT)

HSP 1 Score: 91.7 bits (226), Expect = 2.000e-22
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIAN 258
            M  +DV+DVARDAI V L V+ P M+V L+        QALTQIQEMTLTFVPKI+AIF SLL+F+PFMG  ++ LM RI++RI N
Sbjct:    1 MVGSDVIDVARDAIWVFLIVAGPTMLVALVVGLAISLIQALTQIQEMTLTFVPKIVAIFVSLLVFLPFMGDALNGLMFRISDRIVN 86
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: UPI001FF174AA (flagellar biosynthesis protein FliQ n=1 Tax=Kordiimonas sp. 5E331 TaxID=2917717 RepID=UPI001FF174AA)

HSP 1 Score: 90.9 bits (224), Expect = 3.920e-22
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:   13 DVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIAN 258
            +V+DVARDA+  +L V TP++ VGLI        Q+LTQ+QEMTLTFVPKIIA+F ++L+ MP+MGR+M D M+RIAERI  
Sbjct:    5 EVMDVARDALTTLLYVVTPILAVGLIVGLAIAFFQSLTQLQEMTLTFVPKIIAVFGAILILMPYMGRLMGDFMMRIAERIVG 86
[Close]
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Match: A0A2G4YM10_9PROT (Flagellar biosynthetic protein FliQ n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YM10_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 4.020e-22
Identity = 53/87 (60.92%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 MEANDVLDVARDAIIVMLQVSTPVMMVGLIXXXXXXXXQALTQIQEMTLTFVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL 261
            M   DVLD+A+DAI V+++ S PVM V L         QALTQIQEMTLTFVPKIIAIF SL LFMP+MG+ + D M  IAERI  L
Sbjct:    1 MNGADVLDIAKDAIWVLIKTSAPVMFVALFVGLAIALFQALTQIQEMTLTFVPKIIAIFISLYLFMPYMGQTLADFMQLIAERIVTL 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8625.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYM7_9PROT2.180e-3585.06Flagellar biosynthetic protein FliQ n=1 Tax=Alphap... [more]
A0A351T1V0_9PROT2.610e-2771.26Flagellar biosynthetic protein FliQ n=2 Tax=Alphap... [more]
A0A2E1CXR9_9PROT1.210e-2362.07Flagellar biosynthetic protein FliQ n=1 Tax=Kordii... [more]
A0A2A4TF81_9PROT1.720e-2362.07Flagellar biosynthetic protein FliQ n=3 Tax=root T... [more]
A0A5A7MT18_9PROT6.980e-2363.95Flagellar biosynthetic protein FliQ n=2 Tax=Alphap... [more]
A0A2A4UJJ1_9PROT6.980e-2362.07Flagellar biosynthetic protein FliQ n=1 Tax=Alphap... [more]
A0A850KU35_9PROT1.410e-2258.14Flagellar biosynthetic protein FliQ n=1 Tax=Alphap... [more]
A0A3A0F4Y5_9PROT2.000e-2260.47Flagellar biosynthetic protein FliQ n=1 Tax=Proteo... [more]
UPI001FF174AA3.920e-2258.54flagellar biosynthesis protein FliQ n=1 Tax=Kordii... [more]
A0A2G4YM10_9PROT4.020e-2260.92Flagellar biosynthetic protein FliQ n=1 Tax=Paremc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8625contigP-wetherbeei_contig8625:1041..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123503.KB908056_gene1279
Preferred namefliQ
PFAMsBac_export_3
Model size264
Max annot lvl204458|Caulobacterales
KEGG koko:K02420
KEGG TC3.A.6.2
KEGG Pathwayko02040,map02040
Hectar predicted targeting categorysignal anchor
Exons1
Evalue8.65e-21
EggNOG OGsCOG1987@1|root,COG1987@2|Bacteria,1N73W@1224|Proteobacteria,2UBX6@28211|Alphaproteobacteria,2KH0I@204458|Caulobacterales
DescriptionRole in flagellar biosynthesis
Cds size264
COG categoryN
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187050.6642702-CDS-P-wetherbeei_contig8625:1040..13041683187050.6642702-CDS-P-wetherbeei_contig8625:1040..1304Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8625 1041..1304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8625.3.1prot_P-wetherbeei_contig8625.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8625 1041..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8625.3.1

>prot_P-wetherbeei_contig8625.3.1 ID=prot_P-wetherbeei_contig8625.3.1|Name=mRNA_P-wetherbeei_contig8625.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MEANDVLDVARDAIIVMLQVSTPVMMVGLIVGLIIALFQALTQIQEMTLT
FVPKIIAIFASLLLFMPFMGRVMDDLMVRIAERIANL*
back to top

mRNA from alignment at P-wetherbeei_contig8625:1041..1304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8625.3.1 ID=mRNA_P-wetherbeei_contig8625.3.1|Name=mRNA_P-wetherbeei_contig8625.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig8625:1041..1304+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCCAATGATGTTCTGGACGTTGCCCGCGACGCCATTATTGTCAT
GTTGCAGGTGTCAACGCCCGTGATGATGGTTGGCCTGATCGTCGGCCTGA
TCATCGCCCTGTTTCAGGCCCTGACGCAAATTCAGGAAATGACTCTGACC
TTTGTACCGAAGATCATAGCGATTTTTGCATCGCTTCTGCTGTTCATGCC
GTTTATGGGCCGCGTGATGGACGATCTAATGGTCCGGATTGCGGAAAGGA
TCGCAAATTTATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8625:1041..1304+

>mRNA_P-wetherbeei_contig8625.3.1 ID=mRNA_P-wetherbeei_contig8625.3.1|Name=mRNA_P-wetherbeei_contig8625.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig8625:1041..1304+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGCCAATGATGTTCTGGACGTTGCCCGCGACGCCATTATTGTCAT
GTTGCAGGTGTCAACGCCCGTGATGATGGTTGGCCTGATCGTCGGCCTGA
TCATCGCCCTGTTTCAGGCCCTGACGCAAATTCAGGAAATGACTCTGACC
TTTGTACCGAAGATCATAGCGATTTTTGCATCGCTTCTGCTGTTCATGCC
GTTTATGGGCCGCGTGATGGACGATCTAATGGTCCGGATTGCGGAAAGGA
TCGCAAATTTATAG
back to top