mRNA_P-wetherbeei_contig8618.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8618.1.1
Unique NamemRNA_P-wetherbeei_contig8618.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: A0A1Y2R4R9_9BURK (SnoaL-like domain-containing protein n=2 Tax=Hydrogenophaga sp. IBVHS1 TaxID=1985169 RepID=A0A1Y2R4R9_9BURK)

HSP 1 Score: 132 bits (332), Expect = 1.240e-37
Identity = 64/75 (85.33%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 LPAPTSRYTPANALDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            LPAPTS   PA+ALDYLL  DAIRQTKARYCRYIDTKQW+RL+SIFT DC FEGLGSAP GADVAMFVQGVSSRL
Sbjct:    3 LPAPTSPAQPADALDYLLSADAIRQTKARYCRYIDTKQWDRLASIFTDDCRFEGLGSAPAGADVAMFVQGVSSRL 77          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: UPI00131BA838 (nuclear transport factor 2 family protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131BA838)

HSP 1 Score: 112 bits (281), Expect = 5.760e-30
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 LPAPTSRYTPANALDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            +PAP   Y P + +DYLL  DAIRQ KARYCRYIDTKQW+RL S+FT DC FEGLGSAPPGADVA FV GVSSRL
Sbjct:    1 MPAP---YRP-DPVDYLLSADAIRQVKARYCRYIDTKQWDRLGSLFTPDCRFEGLGSAPPGADVATFVAGVSSRL 71          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: A0A1I5NVM4_9BURK (SnoaL-like domain-containing protein n=1 Tax=Variovorax sp. 770b2 TaxID=1566271 RepID=A0A1I5NVM4_9BURK)

HSP 1 Score: 112 bits (280), Expect = 1.100e-29
Identity = 53/72 (73.61%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   10 PTSRYTPANALDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            P S     + +DYLL VDAIRQ KARYCR+IDTKQWERL ++FT DC FEGLGSAPPGADVA FV GVSSRL
Sbjct:    6 PVSAPASIDPVDYLLSVDAIRQVKARYCRFIDTKQWERLGALFTPDCRFEGLGSAPPGADVAAFVAGVSSRL 77          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: UPI00097C5C4E (nuclear transport factor 2 family protein n=1 Tax=Variovorax sp. KK3 TaxID=1855728 RepID=UPI00097C5C4E)

HSP 1 Score: 100 bits (250), Expect = 2.730e-25
Identity = 47/63 (74.60%), Postives = 54/63 (85.71%), Query Frame = 1
Query:   37 ALDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            +L  LL   AI +TKARYCRYIDTKQW+RL+S+FT+DC FEGLGSAP GADVA FVQGVS+RL
Sbjct:    7 SLQRLLDAQAIAETKARYCRYIDTKQWQRLASLFTADCRFEGLGSAPAGADVATFVQGVSTRL 69          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: A0A6P2FAL5_9BURK (Bile acid 7-alpha dehydratase n=1 Tax=Variovorax sp. PBS-H4 TaxID=434008 RepID=A0A6P2FAL5_9BURK)

HSP 1 Score: 100 bits (249), Expect = 5.110e-25
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1
Query:   46 YLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            +LL  + I Q KARYCRYIDTKQW+RL S+FT DC FEGLGSAPPGADVA FVQGVS+RL
Sbjct:    8 HLLSFEQIAQLKARYCRYIDTKQWDRLPSVFTDDCSFEGLGSAPPGADVATFVQGVSTRL 67          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: A0A7W5DFP5_9BURK (SnoaL-like domain-containing protein n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7W5DFP5_9BURK)

HSP 1 Score: 100 bits (248), Expect = 5.340e-25
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   40 LDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            L  LL   AI +TKARYCRYIDTKQW RL+S+FT DC FEGLGSAP GADVA FVQGVS+RL
Sbjct:    8 LQRLLAAQAIAETKARYCRYIDTKQWSRLASLFTPDCRFEGLGSAPAGADVATFVQGVSTRL 69          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: A0A6P2F2T5_9BURK (Bile acid 7-alpha dehydratase n=1 Tax=Variovorax sp. PBL-H6 TaxID=434009 RepID=A0A6P2F2T5_9BURK)

HSP 1 Score: 97.8 bits (242), Expect = 5.250e-24
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   46 YLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            YLL ++ IR  KARYCRYIDTKQW RL S+FT DC FEGLGSAP GADVA FV GVS+RL
Sbjct:    8 YLLSMERIRSVKARYCRYIDTKQWTRLPSLFTEDCRFEGLGSAPAGADVATFVSGVSARL 67          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: A0A244E8K9_9BURK (SnoaL-like domain-containing protein n=2 Tax=Variovorax sp. JS1663 TaxID=1851577 RepID=A0A244E8K9_9BURK)

HSP 1 Score: 97.8 bits (242), Expect = 8.700e-24
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:   46 YLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            +LL ++ I Q KARYCRYIDTKQWE+L+S+FT DC FEGLGSAP GADVA FV+GVS+RL
Sbjct:   25 HLLALEHIAQLKARYCRYIDTKQWEKLASVFTQDCRFEGLGSAPAGADVATFVKGVSARL 84          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: Q13HM1_PARXL (SnoaL-like domain-containing protein n=1 Tax=Paraburkholderia xenovorans (strain LB400) TaxID=266265 RepID=Q13HM1_PARXL)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-22
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 1
Query:   40 LDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSRL 225
            L YL+ V+AI+ TKARYCR++DTKQW+RL ++FT+DC FEGLGSAP  AD+ +F+QG+S RL
Sbjct:    9 LAYLMAVNAIQMTKARYCRFVDTKQWDRLRTLFTADCRFEGLGSAPDRADLDIFIQGISRRL 70          
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Match: UPI00131D67B0 (nuclear transport factor 2 family protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131D67B0)

HSP 1 Score: 83.6 bits (205), Expect = 1.680e-18
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   34 NALDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDCHFEGLGSAPPGADVAMFVQGVSSR 222
            ++L++LL +++IRQ KARYCR+IDTKQW+RL  +FT DC F+G+G     ADV  FV GVS R
Sbjct:    4 DSLEHLLAIESIRQLKARYCRWIDTKQWQRLPELFTDDCTFDGMGWGDSNADVHAFVSGVSKR 66          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2R4R9_9BURK1.240e-3785.33SnoaL-like domain-containing protein n=2 Tax=Hydro... [more]
UPI00131BA8385.760e-3074.67nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A1I5NVM4_9BURK1.100e-2973.61SnoaL-like domain-containing protein n=1 Tax=Vario... [more]
UPI00097C5C4E2.730e-2574.60nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A6P2FAL5_9BURK5.110e-2576.67Bile acid 7-alpha dehydratase n=1 Tax=Variovorax s... [more]
A0A7W5DFP5_9BURK5.340e-2575.81SnoaL-like domain-containing protein n=3 Tax=uncla... [more]
A0A6P2F2T5_9BURK5.250e-2475.00Bile acid 7-alpha dehydratase n=1 Tax=Variovorax s... [more]
A0A244E8K9_9BURK8.700e-2473.33SnoaL-like domain-containing protein n=2 Tax=Vario... [more]
Q13HM1_PARXL1.110e-2264.52SnoaL-like domain-containing protein n=1 Tax=Parab... [more]
UPI00131D67B01.680e-1857.14nuclear transport factor 2 family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8618contigP-wetherbeei_contig8618:2..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog266265.Bxe_C0517
PFAMsSnoaL_4
Model size225
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.81e-23
EggNOG OGsCOG5517@1|root,COG5517@2|Bacteria,1QY4Q@1224|Proteobacteria
DescriptionSnoaL-like domain
Cds size225
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187050.2461958-CDS-P-wetherbeei_contig8618:1..2261683187050.2461958-CDS-P-wetherbeei_contig8618:1..226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8618 2..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8618.1.1prot_P-wetherbeei_contig8618.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8618 2..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8618.1.1

>prot_P-wetherbeei_contig8618.1.1 ID=prot_P-wetherbeei_contig8618.1.1|Name=mRNA_P-wetherbeei_contig8618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
LPAPTSRYTPANALDYLLCVDAIRQTKARYCRYIDTKQWERLSSIFTSDC
HFEGLGSAPPGADVAMFVQGVSSRL
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mRNA from alignment at P-wetherbeei_contig8618:2..226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8618.1.1 ID=mRNA_P-wetherbeei_contig8618.1.1|Name=mRNA_P-wetherbeei_contig8618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig8618:2..226- (Phaeothamnion wetherbeei SAG_119_79)
TTGCCTGCCCCCACTTCGCGCTACACACCGGCCAACGCGCTGGACTATCT GCTGTGCGTCGACGCGATCCGCCAGACCAAGGCAAGGTATTGCCGCTACA TCGACACCAAGCAGTGGGAACGCCTGTCTTCGATCTTCACGTCCGACTGT CACTTCGAGGGCCTGGGCTCGGCGCCCCCTGGTGCGGATGTGGCGATGTT CGTGCAGGGGGTCTCGAGCCGGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8618:2..226-

>mRNA_P-wetherbeei_contig8618.1.1 ID=mRNA_P-wetherbeei_contig8618.1.1|Name=mRNA_P-wetherbeei_contig8618.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig8618:2..226- (Phaeothamnion wetherbeei SAG_119_79)
TTGCCTGCCCCCACTTCGCGCTACACACCGGCCAACGCGCTGGACTATCT
GCTGTGCGTCGACGCGATCCGCCAGACCAAGGCAAGGTATTGCCGCTACA
TCGACACCAAGCAGTGGGAACGCCTGTCTTCGATCTTCACGTCCGACTGT
CACTTCGAGGGCCTGGGCTCGGCGCCCCCTGGTGCGGATGTGGCGATGTT
CGTGCAGGGGGTCTCGAGCCGGCTC
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