mRNA_P-wetherbeei_contig8611.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8611.3.1
Unique NamemRNA_P-wetherbeei_contig8611.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8611.3.1 vs. uniprot
Match: A0A4Q6FH02_9GAMM (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6FH02_9GAMM)

HSP 1 Score: 55.8 bits (133), Expect = 2.420e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   49 ARNARGRTALHLACLRAHDHVVSLLLDSGADPLARDGEGHQP 174
            AR+ARGR+ALH A L  H  +V++LLD+GADP ARDG+G  P
Sbjct:  434 ARDARGRSALHEAALAGHAGIVAVLLDAGADPHARDGDGRTP 475
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BLAST of mRNA_P-wetherbeei_contig8611.3.1 vs. uniprot
Match: A0A150GZD0_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZD0_GONPE)

HSP 1 Score: 50.8 bits (120), Expect = 1.470e-5
Identity = 31/65 (47.69%), Postives = 36/65 (55.38%), Query Frame = 1 
Query:    1 RRQPTAKHVPPGNTKQARNARGRTALHLACLRAHDHVVSL-------LLDSGADPLARDGEGHQP 174
            R QP A H P       R+ARGRTALH+AC R H H  S+       LL +GADP A D  G +P
Sbjct: 1046 RAQPAA-HKPAARCVDCRDARGRTALHMACSRPHVHGPSMEGCCVVTLLAAGADPNAEDDGGRRP 1109
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BLAST of mRNA_P-wetherbeei_contig8611.3.1 vs. uniprot
Match: A0A8J4BUX7_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BUX7_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 3.760e-5
Identity = 27/53 (50.94%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:   49 ARNARGRTALHLACLRAHDH-------VVSLLLDSGADPLARDGEGHQPCDLL 186
            AR+ARGRTALH+AC R H H        V +LL  GADP   DG G +P  L+
Sbjct: 1314 ARDARGRTALHVACTRPHLHGPGMEGCCVEVLLREGADPDVADGAGQRPLHLV 1366
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8611.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4Q6FH02_9GAMM2.420e-761.90Ankyrin repeat domain-containing protein (Fragment... [more]
A0A150GZD0_GONPE1.470e-547.69Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4BUX7_9CHLO3.760e-550.94Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8611contigP-wetherbeei_contig8611:1974..2192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog15368.BRADI1G56600.1
PFAMsAnk_4,Ank_5,RCC1
Model size219
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.93e-05
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota,37KN6@33090|Viridiplantae,3GG36@35493|Streptophyta,3KWJB@4447|Liliopsida,3I3G5@38820|Poales
DescriptionRegulator of chromosome condensation (RCC1) repeat
Cds size219
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.9413552-CDS-P-wetherbeei_contig8611:1973..21921683187049.9413552-CDS-P-wetherbeei_contig8611:1973..2192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8611 1974..2192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8611.3.1prot_P-wetherbeei_contig8611.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8611 1974..2192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8611.3.1

>prot_P-wetherbeei_contig8611.3.1 ID=prot_P-wetherbeei_contig8611.3.1|Name=mRNA_P-wetherbeei_contig8611.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
RRQPTAKHVPPGNTKQARNARGRTALHLACLRAHDHVVSLLLDSGADPLA
RDGEGHQPCDLLPATVPQVKPIL
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mRNA from alignment at P-wetherbeei_contig8611:1974..2192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8611.3.1 ID=mRNA_P-wetherbeei_contig8611.3.1|Name=mRNA_P-wetherbeei_contig8611.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig8611:1974..2192+ (Phaeothamnion wetherbeei SAG_119_79)
CGACGACAACCCACCGCAAAACACGTTCCCCCTGGAAACACGAAACAGGC
CCGCAACGCCCGCGGCCGCACAGCGCTTCACCTGGCCTGCCTGCGGGCGC
ACGACCACGTCGTGTCACTGCTGCTCGACTCCGGGGCGGACCCCCTCGCA
AGGGACGGCGAGGGCCACCAGCCCTGCGACCTGCTGCCGGCCACCGTGCC
CCAGGTAAAGCCTATCCTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8611:1974..2192+

>mRNA_P-wetherbeei_contig8611.3.1 ID=mRNA_P-wetherbeei_contig8611.3.1|Name=mRNA_P-wetherbeei_contig8611.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig8611:1974..2192+ (Phaeothamnion wetherbeei SAG_119_79)
CGACGACAACCCACCGCAAAACACGTTCCCCCTGGAAACACGAAACAGGC
CCGCAACGCCCGCGGCCGCACAGCGCTTCACCTGGCCTGCCTGCGGGCGC
ACGACCACGTCGTGTCACTGCTGCTCGACTCCGGGGCGGACCCCCTCGCA
AGGGACGGCGAGGGCCACCAGCCCTGCGACCTGCTGCCGGCCACCGTGCC
CCAGGTAAAGCCTATCCTA
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