mRNA_P-wetherbeei_contig8611.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8611.1.2
Unique NamemRNA_P-wetherbeei_contig8611.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8611.1.2 vs. uniprot
Match: A0A067CRH3_SAPPC (Ion_trans domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRH3_SAPPC)

HSP 1 Score: 55.8 bits (133), Expect = 5.380e-6
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   19 LHILAERGDLRGCRTVLRSGQNPDEPNADGLTPLHFASAMGHADVASLLVR 171
            LH+LAERG LRGC+   +     D  + DG TPLH A+++GHAD+     +
Sbjct:  262 LHVLAERGSLRGCKLACKYHAKLDAADMDGATPLHIAASLGHADLCRFFAK 312
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8611.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A067CRH3_SAPPC5.380e-645.10Ion_trans domain-containing protein n=1 Tax=Saprol... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8611contigP-wetherbeei_contig8611:675..1779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36331.EPrPI00000017998
PFAMsAnk_2,Ank_3,Ank_4,Ank_5,NACHT
Model size498
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.62e-05
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size498
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187049.8872893-CDS-P-wetherbeei_contig8611:674..8121683187049.8872893-CDS-P-wetherbeei_contig8611:674..812Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8611 675..812 +
1683187049.8987322-CDS-P-wetherbeei_contig8611:920..11141683187049.8987322-CDS-P-wetherbeei_contig8611:920..1114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8611 921..1114 +
1683187049.9091942-CDS-P-wetherbeei_contig8611:1613..17791683187049.9091942-CDS-P-wetherbeei_contig8611:1613..1779Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8611 1614..1779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8611.1.2prot_P-wetherbeei_contig8611.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8611 675..1779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8611.1.2

>prot_P-wetherbeei_contig8611.1.2 ID=prot_P-wetherbeei_contig8611.1.2|Name=mRNA_P-wetherbeei_contig8611.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MPAALSLHILAERGDLRGCRTVLRSGQNPDEPNADGLTPLHFASAMGHAD
VASLLVRDGAWVDARDGLQCTPLHAACEGGFVGIAAMLLDAGAAINARNG
HDQTPLHYAVSYQQEATATLLVKRSVSLSAKDSQGRTPLHMACIAGDCRI
IEMLLRSGCRISVRRA
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mRNA from alignment at P-wetherbeei_contig8611:675..1779+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8611.1.2 ID=mRNA_P-wetherbeei_contig8611.1.2|Name=mRNA_P-wetherbeei_contig8611.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1105bp|location=Sequence derived from alignment at P-wetherbeei_contig8611:675..1779+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCGCCCTCAGCTTGCATATCTTGGCTGAGCGAGGTGATCTCAG
GGGTTGCCGGACCGTCCTGCGTTCAGGCCAGAACCCAGACGAACCGAACG
CCGATGGTCTTACCCCGTTGCATTTCGCAAGTGCCATGGTAAGAGCTGAC
ATCGATTGGCTTTCGCTTGCTGTCTTATCATAACGGGGACTCGCAAACTT
ACCCCCGAGGTGCAACTCTGCGCCCTTGGAACCACCGTTTGGACAGGGCC
ACGCCGACGTCGCCAGCTTGCTCGTACGCGATGGTGCATGGGTTGACGCC
CGGGATGGGTTGCAATGTACGCCTCTCCACGCCGCTTGCGAAGGGGGTTT
TGTGGGGATTGCGGCGATGCTTCTGGACGCTGGCGCCGCAATCAATGCGC
GCAACGGACACGATCAGACGCCACTCCACTACGCCGTGAGGTGAGCATCG
CTGGCCTAGAGGGAGGACATCTCTTCAGGATTTTCACGCCAGGATCGTGC
CAGGACAGAATCGTCTAGCTCTTTTTATGTATTGCTGAACTTCAGGCTGA
TGAATCCACTCCGCCGCCATTGTCTTGTCAATAGGAAGATCTTATACATG
GGAGCGCTTCCGCATTTGGGTTTGTGAGGAGTACTTGTGTGTGCAAATCA
TCCTGCTCTTTTTACCAAGGTTAATGCATGGGGACTCTTCTGCATTTGGG
TTTGGAAGAAGTACTGTGTGTGCGAATTATCCTGCTCTTTTTACCAGATT
CTTCTGCTACAACCTCCCACCTCTCTCCTTTTCCTGAGCCTCAAATATTT
CTTGGCCTGGCCTCGCCCTCGTCTTTGGACAAACCCTCGCTGCCGCCGAT
GCGGATATCGCCGACGCCGGCAACGCTGCGGCCGCCGACACAACGTCATA
CCCATTCCGCTGACGGATGGATGAATTGACGGATGATAGCTACCAACAAG
AGGCGACGGCCACCTTGCTTGTGAAGCGCAGTGTCTCTTTGTCGGCGAAG
GACAGCCAGGGCCGAACGCCGCTACACATGGCGTGCATCGCCGGTGATTG
TCGTATCATCGAGATGCTGCTCCGGAGCGGCTGCAGGATCTCGGTACGTC
GCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8611:675..1779+

>mRNA_P-wetherbeei_contig8611.1.2 ID=mRNA_P-wetherbeei_contig8611.1.2|Name=mRNA_P-wetherbeei_contig8611.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig8611:675..1779+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCCGCCCTCAGCTTGCATATCTTGGCTGAGCGAGGTGATCTCAG
GGGTTGCCGGACCGTCCTGCGTTCAGGCCAGAACCCAGACGAACCGAACG
CCGATGGTCTTACCCCGTTGCATTTCGCAAGTGCCATGGGCCACGCCGAC
GTCGCCAGCTTGCTCGTACGCGATGGTGCATGGGTTGACGCCCGGGATGG
GTTGCAATGTACGCCTCTCCACGCCGCTTGCGAAGGGGGTTTTGTGGGGA
TTGCGGCGATGCTTCTGGACGCTGGCGCCGCAATCAATGCGCGCAACGGA
CACGATCAGACGCCACTCCACTACGCCGTGAGCTACCAACAAGAGGCGAC
GGCCACCTTGCTTGTGAAGCGCAGTGTCTCTTTGTCGGCGAAGGACAGCC
AGGGCCGAACGCCGCTACACATGGCGTGCATCGCCGGTGATTGTCGTATC
ATCGAGATGCTGCTCCGGAGCGGCTGCAGGATCTCGGTACGTCGCGCT
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