mRNA_P-wetherbeei_contig8598.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8598.1.1
Unique NamemRNA_P-wetherbeei_contig8598.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A6H5K490_9PHAE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K490_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.820e-26
Identity = 63/110 (57.27%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:   10 GRSDSGGXXXXXXXSPTGLAFLAVERTVSGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGRERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTRHPTVP 339
            GRS           +PTG       R+V+G+ +RRR + ACR LRAQI+H+E  FQAE GH PRGRERAPL STYAQYK WK+ IRDDA+T +QA  RGY  R RHP VP
Sbjct:  633 GRSGGSAWGGGAGDNPTGRGG----RSVAGSLERRRILLACRTLRAQIDHYEMNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQATYRGYRERKRHPEVP 738
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 3.760e-26
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   85 RTVSGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGRERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTRHPTVP 339
            R+V+G+ +RRR + ACR LRAQI+H+E  FQAE GH PRGRERAPL STYAQYK WK+ IRDDA+T +QA  RGY  R RHP VP
Sbjct:  308 RSVAGSLERRRMMLACRTLRAQIDHYEVNFQAEYGHPPRGRERAPLVSTYAQYKSWKQFIRDDASTQLQATYRGYRERKRHPEVP 392
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A7S2FSF7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSF7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.420e-19
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:  100 AADRRRTVQACRALRAQINHFEEAFQAECGHLPRGRERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTR-----HPTVPSR 345
            A +RRR VQACR LR QI  FE+AFQ + GH+P+G ER PLASTY QY+ WK+ IRD AA  +QA  RG++AR       HP  P R
Sbjct:  294 AHERRRMVQACRTLRIQIKRFEDAFQRQHGHVPKGSERTPLASTYCQYREWKKNIRDHAAAQVQALFRGWNARAAARHRDHPAAPRR 380
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A7S2BLF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLF6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 8.000e-18
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:  100 AADRRRTVQACRALRAQINHFEEAFQAECGHLPRGRERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTRHPTVPS 342
            + +RRR V AC+ LR QI  FEEA   + G LP+GRER PLA+TYAQY+ WK+ IRDDAA  +QA  RG+  RTR    PS
Sbjct:  282 SCERRRMVLACKTLRLQIRQFEEAHMKQLGRLPKGRERQPLATTYAQYREWKKNIRDDAAGRLQALYRGWRCRTRRYQGPS 362
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A1Z5JLH8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JLH8_FISSO)

HSP 1 Score: 92.8 bits (229), Expect = 7.410e-17
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:   52 SPTGLAFLAVERTV-SGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGR-ERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTR 324
            +P+G A     RT+ S AA+R+RTV ACRALRAQI  FE+AF    G  P+G  ERAPLASTYAQY+ WKR IR DAA  IQA IRG  ARTR
Sbjct:  734 TPSGAAHY---RTLTSTAAERKRTVAACRALRAQIQRFEDAFFQLHGRPPKGNAERAPLASTYAQYREWKRAIRADAACRIQALIRG--ARTR 821
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A1Z5K617_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K617_FISSO)

HSP 1 Score: 92.0 bits (227), Expect = 1.310e-16
Identity = 58/93 (62.37%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:   52 SPTGLAFLAVERTV-SGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGR-ERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTR 324
            +P+G A     RT+ S AA+R+RTV ACRALRAQI  FE+AF    G  P+G  ERAPLASTYAQY+ WKR IR DAA  IQA IRG  ARTR
Sbjct:  657 TPSGAANY---RTLTSTAAERKRTVAACRALRAQIQRFEDAFFQLHGRPPKGNAERAPLASTYAQYREWKRAIRADAACRIQALIRG--ARTR 744
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A7R9U7W0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7W0_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.420e-16
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   85 RTVSGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGRERAPLASTYAQYKHWKRLIRDDAATSIQAFIR 303
            R V+G+ +RRR VQACR LR QI  FEE F    GH P+G ERAPL STYAQY+ WKR IR+DAA  IQ   R
Sbjct:  256 RRVAGSLERRRMVQACRVLRTQITKFEERFAETHGHPPKGAERAPLGSTYAQYRSWKRFIREDAAQHIQRCFR 328
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: B7FUV2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUV2_PHATC)

HSP 1 Score: 91.7 bits (226), Expect = 1.870e-16
Identity = 48/77 (62.34%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:   94 SGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGR-ERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHART 321
            S AA+R+RTV ACRALRAQI  FE+AF    G  P+G  ERAPL +TYAQY+ WKR IR DAA+ IQA  RG+  RT
Sbjct:  879 STAAERKRTVAACRALRAQIQRFEDAFLQLHGRSPKGAVERAPLTTTYAQYREWKRAIRADAASRIQALFRGFRTRT 955
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A7S3DR27_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DR27_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.400e-16
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   94 SGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGR-ERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHARTR 324
            S AA+R+RTV ACRALRAQI  FE+AF    G  P+G  ERAPLA+TYAQY+ WKR IR DAA  IQA +RG  ARTR
Sbjct:   44 STAAERKRTVAACRALRAQIQRFEDAFVQLHGRPPKGAAERAPLATTYAQYREWKRAIRADAACRIQALLRG--ARTR 119
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BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Match: A0A7S4N5X0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5X0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.150e-15
Identity = 49/76 (64.47%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:   94 SGAADRRRTVQACRALRAQINHFEEAFQAECGHLPRGR-ERAPLASTYAQYKHWKRLIRDDAATSIQAFIRGYHAR 318
            S AA+R+RTV ACRALRAQI+ FEEAF    G  P+G  ERAPLA+TYAQY+ WKR IR DAA  IQA  RG   R
Sbjct: 1023 STAAERKRTVAACRALRAQISRFEEAFIQLHGRPPKGAAERAPLATTYAQYREWKRAIRADAACRIQALFRGARVR 1098
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8598.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K490_9PHAE1.820e-2657.27Rho-GAP domain-containing protein (Fragment) n=1 T... [more]
D8LSI7_ECTSI3.760e-2667.06Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2FSF7_9STRA2.420e-1956.32Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BLF6_9STRA8.000e-1856.79Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A1Z5JLH8_FISSO7.410e-1762.37Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5K617_FISSO1.310e-1662.37Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7R9U7W0_9STRA1.420e-1661.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
B7FUV2_PHATC1.870e-1662.34Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3DR27_9STRA3.400e-1665.38Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4N5X0_9STRA1.150e-1564.47Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8598contigP-wetherbeei_contig8598:707..2739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSI7
Model size1062
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.17e-27
EggNOG OGs2E3C3@1|root,2SAFP@2759|Eukaryota
Cds size1062
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.9341276-CDS-P-wetherbeei_contig8598:706..7931683187048.9341276-CDS-P-wetherbeei_contig8598:706..793Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8598 707..793 -
1683187048.9435854-CDS-P-wetherbeei_contig8598:1173..14411683187048.9435854-CDS-P-wetherbeei_contig8598:1173..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8598 1174..1441 -
1683187048.9519155-CDS-P-wetherbeei_contig8598:1558..19741683187048.9519155-CDS-P-wetherbeei_contig8598:1558..1974Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8598 1559..1974 -
1683187048.9602613-CDS-P-wetherbeei_contig8598:2173..23141683187048.9602613-CDS-P-wetherbeei_contig8598:2173..2314Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8598 2174..2314 -
1683187048.9689696-CDS-P-wetherbeei_contig8598:2589..27391683187048.9689696-CDS-P-wetherbeei_contig8598:2589..2739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8598 2590..2739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8598.1.1prot_P-wetherbeei_contig8598.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8598 707..2739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8598.1.1

>prot_P-wetherbeei_contig8598.1.1 ID=prot_P-wetherbeei_contig8598.1.1|Name=mRNA_P-wetherbeei_contig8598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=354bp
GSGGRSDSGGSGGGGGGSPTGLAFLAVERTVSGAADRRRTVQACRALRAQ
INHFEEAFQAECGHLPRGRERAPLASTYAQYKHWKRLIRDDAATSIQAFI
RGYHARTRHPTVPSRRRSRSASVAAAAAAAAAAAAADALAAPLPKPASTV
DLDSGSSSTRSHPSPDPRAVSPPRVSAGHLQAAAAAGAVAAAAAAATAAA
SASTAPGAPAAPASAIAAAAPIAAAVAPTTAVAAAPAAAGVGSSSSSGSS
GGSTGRATAGAAGSAAAGVVREFGSGGGGGGGAGARWSEANERLMVLTEE
KRRVKAKLKDFDARFIEQHGRQPSKPEKEPMRQLYDRYNSLKHQIRDAEA
AVLA
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mRNA from alignment at P-wetherbeei_contig8598:707..2739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8598.1.1 ID=mRNA_P-wetherbeei_contig8598.1.1|Name=mRNA_P-wetherbeei_contig8598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2033bp|location=Sequence derived from alignment at P-wetherbeei_contig8598:707..2739- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCGGCCGCAGCGACAGCGGCGGAAGCGGCGGCGGCGGCGGCGG
CAGCCCGACGGGCCTCGCCTTTCTGGCGGTGGAGCGGACCGTCAGCGGAG
CGGCGGACCGGCGACGCACCGTTCAGGCGTGTCGAGCCCTCCGAGCACAA
GTGCGTCTGCTGCGAGCAGATACAGCGGAAACTTTTTTGCATTCCGGCTT
TTGGATGAAAGAGGAGGCCGTTTCTTGCCCGGTGCATCTGCGCATCTGTT
GTTTTCCTGGCGGACGTTCATTTCAAGCATTGCTTGGGTCATAGCAAAGG
CTGCTGCCACGCTATGGGCCCGCAAGCTTTCCATTTTGGGCAACCTTTTC
TGTATTTTAAAAAAGTTTTGCTGTCAGAAGTCAAACCGATCGTTTACGTT
TCTTCACCCGCCCGTGTGCGCGCAGATTAACCATTTTGAAGAGGCGTTCC
AGGCGGAGTGCGGCCATCTGCCGCGGGGCCGTGAGCGCGCCCCGCTGGCG
TCGACGTACGCGCAGTACAAGCACTGGAAGCGTCTCATCCGAGACGACGC
CGCCACCTCCATTCAGGTACAGATTGCACTCCGCTTTCTCTTTCTTGGTT
CGTTTTAGTTGCCACCATGAGGCGGTCCTTGGGTTTTTTGGACGCTTTTG
CTCCCTCGCTCTTTTCTTGCTCTTGCTGCCGAGAGCCGAAGAAGAAGGCT
GATATGTCAACCCGTACGAAAATAAACCGACATCTTCCTTTCGAGCCTGC
TGCGCCCTCCGCCAGGCGTTCATCCGAGGGTACCACGCCCGCACGAGGCA
CCCGACGGTGCCGTCGCGGAGGCGCAGCCGCTCGGCATCCGTCGCCGCAG
CAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGACGCCCTTGCCGCGCCG
CTGCCGAAGCCGGCCTCGACCGTGGACCTCGACAGCGGCAGCAGCAGCAC
CAGGAGCCACCCGTCGCCGGACCCCCGTGCGGTCAGCCCGCCGCGCGTGT
CCGCTGGACACCTTCAGGCGGCGGCTGCTGCGGGCGCCGTGGCGGCCGCT
GCTGCCGCCGCGACGGCAGCAGCGTCGGCCTCTACTGCTCCGGGAGCCCC
AGCAGCCCCGGCTTCTGCTATCGCCGCCGCCGCGCCGATAGCCGCCGCTG
TCGCCCCCACAACCGCCGTTGCTGCCGCTCCGTCGCCCGCCGCCGCCGTC
ATCAACGTCGTTGCAACCGCCCCGGTCGCGCCGTCGGTGTCGCCCGAACG
GGGACCACCTCCGCCGCACGAGCACGCGCCGCGCGCGCCTGCAGTGAGCG
CGGCAGCGGGCGTAGGGTCGTCGTCGTCGTCCGGATCGTCCGGGGGGTCA
ACCGGCAGAGCCACGGCGGGGGCAGCGGGATCAGCGGCAGCGGGGGTCGT
CCGGGAATTCGGGAGCGGCGGCGGAGGCGGCGGCGGTGCCGGCGCCCGCT
GGAGTGAGGCGAACGAGCGGCTGATGGTGCTGACGGAGGAGAAGCGGCGG
GTCAAGGCGAAGCTCAAGGACTTTGACGCCCGCTTCATCGAGCAGCACGG
CCGCCAGCCCAGCAAGGTAAGGATGAGATTTGTCATGGGTTCCGTTTTCT
TGCGGGAGAGAGAGGAAGAGAGTTTCGTCGTTTAGTTTTCATTTGCACCT
AGAGACGTATGTTCGGCAAAATGCTGCGCCGTTCCCGGCATTGTTTTCTG
CCAGTTTGAAAGGAGCGACGGGCTGAGCGCCATATTTGAGTTGAGAATGA
AGGCCGTCTCAGCTCGCGCGTTGGCGGCACAAAATCCTGGAATTTTCCCT
CTGCTGATTGATACCTTCCGGGTTTTTTATCTCACATTGGACCAAGACGT
CGTCAGCAATCCATTAAACTCTCTCCTTCGCCTCTCTTTGCTCCTACGTT
CCGCCTCTGCCCACCGTCCCTCTCGTGCACCAAACACAATGCACAGCCTG
AGAAGGAGCCGATGCGGCAGTTGTATGACCGTTACAACAGCCTCAAGCAC
CAGATCCGCGACGCCGAAGCCGCCGTCCTTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8598:707..2739-

>mRNA_P-wetherbeei_contig8598.1.1 ID=mRNA_P-wetherbeei_contig8598.1.1|Name=mRNA_P-wetherbeei_contig8598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig8598:707..2739- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGGCGGCCGCAGCGACAGCGGCGGAAGCGGCGGCGGCGGCGGCGG
CAGCCCGACGGGCCTCGCCTTTCTGGCGGTGGAGCGGACCGTCAGCGGAG
CGGCGGACCGGCGACGCACCGTTCAGGCGTGTCGAGCCCTCCGAGCACAA
ATTAACCATTTTGAAGAGGCGTTCCAGGCGGAGTGCGGCCATCTGCCGCG
GGGCCGTGAGCGCGCCCCGCTGGCGTCGACGTACGCGCAGTACAAGCACT
GGAAGCGTCTCATCCGAGACGACGCCGCCACCTCCATTCAGGCGTTCATC
CGAGGGTACCACGCCCGCACGAGGCACCCGACGGTGCCGTCGCGGAGGCG
CAGCCGCTCGGCATCCGTCGCCGCAGCAGCGGCGGCGGCGGCGGCGGCGG
CGGCAGCAGACGCCCTTGCCGCGCCGCTGCCGAAGCCGGCCTCGACCGTG
GACCTCGACAGCGGCAGCAGCAGCACCAGGAGCCACCCGTCGCCGGACCC
CCGTGCGGTCAGCCCGCCGCGCGTGTCCGCTGGACACCTTCAGGCGGCGG
CTGCTGCGGGCGCCGTGGCGGCCGCTGCTGCCGCCGCGACGGCAGCAGCG
TCGGCCTCTACTGCTCCGGGAGCCCCAGCAGCCCCGGCTTCTGCTATCGC
CGCCGCCGCGCCGATAGCCGCCGCTGTCGCCCCCACAACCGCCGTTGCTG
CCGCTCCCGCGGCAGCGGGCGTAGGGTCGTCGTCGTCGTCCGGATCGTCC
GGGGGGTCAACCGGCAGAGCCACGGCGGGGGCAGCGGGATCAGCGGCAGC
GGGGGTCGTCCGGGAATTCGGGAGCGGCGGCGGAGGCGGCGGCGGTGCCG
GCGCCCGCTGGAGTGAGGCGAACGAGCGGCTGATGGTGCTGACGGAGGAG
AAGCGGCGGGTCAAGGCGAAGCTCAAGGACTTTGACGCCCGCTTCATCGA
GCAGCACGGCCGCCAGCCCAGCAAGCCTGAGAAGGAGCCGATGCGGCAGT
TGTATGACCGTTACAACAGCCTCAAGCACCAGATCCGCGACGCCGAAGCC
GCCGTCCTTGCC
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