mRNA_P-wetherbeei_contig8593.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8593.1.1
Unique NamemRNA_P-wetherbeei_contig8593.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A835YXL8_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXL8_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.240e-52
Identity = 79/141 (56.03%), Postives = 101/141 (71.63%), Query Frame = 1
Query:   19 MSALTSRTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKAAA-------SETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGF 420
            MSAL SR V LHVYD+H AN WL  +GLG++HSGVEI GKEYTFS  G+ HH PK A        +  + FKC++P+G+++GS+N VH IVR LR+   F PGTY++  +NCNHFAE+    LTG   PAW+NRAAG+GG+
Sbjct:    1 MSALDSRAVTLHVYDLHQANGWLSRVGLGIYHSGVEIAGKEYTFSDDGVFHHAPKGAGRGGGQNGAPQITFKCSVPVGTYDGSFNHVHAIVRRLRET-DFQPGTYNIGTKNCNHFAEALVRELTGAEFPAWVNRAAGMGGW 140          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A7S2SKP3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKP3_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.040e-40
Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 1
Query:   19 MSALTSRTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGFF 423
            M+AL +R V+LHVYD+H  NSWL  IG GV H+G+EIGG EY+FS +GI    P+ A      F+ +I +G   GS+NEV +I+RE+RD+  F PGTY + ++NCN F  +    +TG  +P W+NRAA VG FF
Sbjct:    1 MAALAAREVILHVYDLHQGNSWLSPIGFGVFHTGLEIGGMEYSFSQEGIFKCAPRQAPPPAK-FRESIVLGEHHGSHNEVSQIIREMRDE--FAPGTYDLVRKNCNSFTNALSLRITGVPIPTWVNRAASVGSFF 132          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: D8LRA3_ECTSI (PPPDE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA3_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.350e-38
Identity = 65/132 (49.24%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   37 RTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGFFGVG 432
            R V L+VYD+H +NSWL  IGLG +HSG+EIGG EYTFS  G+  HPP+  A + V FK T  +G F G+  +V RI+  L+ + GF  G Y V + NCNHF +    ALTG+ +P W+NRAA +  + G+G
Sbjct:    6 RPVQLNVYDLHESNSWLQHIGLGAYHSGLEIGGVEYTFSEAGVAQHPPRQIAGDGVSFKTTEVLGDFIGTMPDVRRILNGLKAE-GFAEGEYDVIRNNCNHFCDELAFALTGKRIPPWVNRAATIATWAGLG 136          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: W7U8D7_9STRA (PPPDE domain-containing protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8D7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.600e-37
Identity = 66/146 (45.21%), Postives = 93/146 (63.70%), Query Frame = 1
Query:   19 MSALTSRTVLLHVYDM---HSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKA---AASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGFFGVGGN 438
            M+A + R V+L+VY++       SW+  +GLG  H+GVE+GG EYTF+  G+  H PK    A+ + V  K +I MG   GS NEVH I+ +LR++  F  G Y VT++NCNH++++ C  L G SVPAW+NR A +G  F  GGN
Sbjct:    1 MAASSRRDVILNVYELTDEQGTGSWMRRVGLGAWHTGVEVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREE--FAAGAYHVTRKNCNHYSDALCQRLVGASVPAWVNRPARIGSIFSFGGN 144          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A7S1TWF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWF2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.600e-33
Identity = 59/130 (45.38%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   19 MSALTSRTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAG 408
            M+A  SRT+ L+VY++   N WLG++G GV+HS +EI G+EY+FS +G+     +    E +  +  + +G FEGS N V++ V ELR +  F PGTY+V  +NCNHF+ +F  AL G  +PAW+NR AG
Sbjct:   20 MAAFQSRTIYLNVYNLTPHNGWLGSVGAGVYHSAIEISGREYSFSNEGVLVTTGRTGKQEDLHER--LELGDFEGSMNLVNQRVSELRQE--FAPGTYNVLTQNCNHFSNAFSTALLGVGIPAWVNRMAG 145          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A7R9UBZ3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBZ3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.560e-32
Identity = 56/131 (42.75%), Postives = 83/131 (63.36%), Query Frame = 1
Query:   19 MSALTSRTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGV 411
            M+A   R V L+VY++   N WL  +GLG +HS VEI G+EYTFS  G+          E    +  I +G+F+GS N+++ +V  LR+D  F PG+Y V ++NCNHF+++F  AL G+ +P W+NR AG+
Sbjct:    1 MAAFQEREVFLNVYNLGQHNRWLSGLGLGAYHSAVEISGREYTFSNDGVL--VTTGRTGEEAALREKISLGTFQGSMNQINEVVVRLRED--FAPGSYDVIRQNCNHFSDAFSMALLGKGIPGWINRMAGL 127          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A835Z1G9_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.450e-32
Identity = 61/134 (45.52%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   25 ALTSRTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQG-ITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGFF 423
            A   + VLL+VYD++ AN +L + G G++HSGV+IGGKEYTF+  G I  H PK A      F+C++ MG+F G    +   +  LR D  FGP  Y +  RNCN F+ +FC AL  + +PAW+NRAA +G +F
Sbjct:    8 AARPQEVLLNVYDLNEANEYLHSTGFGLYHSGVQIGGKEYTFAGGGGIFSHEPKDAPGAR--FRCSVSMGTFTGGQAAIDDAIASLRGD--FGPDAYHILCRNCNSFSNAFCEALLNKPIPAWVNRAAWMGSWF 137          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A7S2SD28_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SD28_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.950e-29
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   43 VLLHVYDMHS-ANSWLGAIGLGVHHSGVEIGGKEYTFSAQGITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGFF 423
            V ++VYD+ S  N W+G +GLG +HSGV+IG +EYTFS  G+ +H P  A  E V FK T+ MG    S + V+  V+ELR    F PGTY + ++NCNHF ++  + L G+S+P ++NR+A +G  F
Sbjct:    3 VNVNVYDIASNLNKWVGWMGLGAYHSGVQIGSREYTFSNSGVIYHQPFEAGEEAV-FKETLTMGQVP-SMSAVNAAVQELRHQ--FAPGTYDLVKQNCNHFTQALVNKLLGKSIPGYINRSANLGSTF 126          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A7S1YZ49_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YZ49_TRICV)

HSP 1 Score: 110 bits (274), Expect = 6.920e-28
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   43 VLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTF-SAQGITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVG 414
            V+L++YD+  AN +L  IG G+HHSGVEIGG EY+F S  G+    P+ A      F+ ++ +G++EG   +   ++ +LR    FGP  Y++ +RNCNHFA++ C AL G  +PA +NR A +G
Sbjct:   14 VMLNLYDLTPANEYLYPIGFGLHHSGVEIGGTEYSFASGAGVFDSTPREAPGAR--FRESVELGTYEGGSGDARVVIDDLRSS--FGPSDYNLLKRNCNHFADALCWALLGRRIPAHINRLADIG 134          
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Match: A0A7S1XRH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRH3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.010e-27
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   37 RTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQ-GITHHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSVTQRNCNHFAESFCHALTGESVPAWLNRAAGVGGF 420
            ++V+LHVYD+  AN +LG +G+G +HSG+E+ G+EYTF+AQ GI  H PK A    V  + +I +G+FEG    +  IV +L+ D  F    Y++ + NCNHFA++    L G  +P ++NR A  G F
Sbjct:   17 QSVVLHVYDLSPANDFLGGVGIGAYHSGLEVAGEEYTFAAQAGIFTHGPKQAPG--VRLRESIQLGTFEGGPITLRGIVEDLKKD--FSGSHYNIVRCNCNHFADALARTLVGRGIPDYVNRLAWFGSF 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8593.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXL8_9STRA1.240e-5256.03PPPDE putative peptidase domain-containing protein... [more]
A0A7S2SKP3_9STRA3.040e-4049.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LRA3_ECTSI1.350e-3849.24PPPDE domain-containing protein n=1 Tax=Ectocarpus... [more]
W7U8D7_9STRA3.600e-3745.21PPPDE domain-containing protein n=3 Tax=Nannochlor... [more]
A0A7S1TWF2_9STRA3.600e-3345.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9UBZ3_9STRA1.560e-3242.75Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835Z1G9_9STRA2.450e-3245.52PPPDE putative peptidase domain-containing protein... [more]
A0A7S2SD28_9STRA9.950e-2945.31Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1YZ49_TRICV6.920e-2842.40Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1XRH3_9STRA1.010e-2742.64Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8593contigP-wetherbeei_contig8593:1837..2514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRA3
Preferred nameDESI2
PFAMsPeptidase_C97
Model size438
Max annot lvl2759|Eukaryota
KEGG koko:K20057
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006508,GO:0006807,GO:0007275,GO:0007369,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0016579,GO:0016787,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048598,GO:0048729,GO:0048856,GO:0060026,GO:0060027,GO:0060429,GO:0061578,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0101005,GO:0140096,GO:1901564,GO:1990380
Exons2
Evalue2.52e-39
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
Ec32 ortholog descriptionPPPDE putative peptidase domain
Ec32 orthologEc-06_003270.1
DescriptionLys63-specific deubiquitinase activity
Cds size420
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.8302386-CDS-P-wetherbeei_contig8593:1836..21411683187048.8302386-CDS-P-wetherbeei_contig8593:1836..2141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8593 1837..2141 -
1683187048.8586738-CDS-P-wetherbeei_contig8593:2381..24961683187048.8586738-CDS-P-wetherbeei_contig8593:2381..2496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8593 2382..2496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.8742108-UTR-P-wetherbeei_contig8593:2496..25141683187048.8742108-UTR-P-wetherbeei_contig8593:2496..2514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8593 2497..2514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8593.1.1prot_P-wetherbeei_contig8593.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8593 1837..2496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8593.1.1

>prot_P-wetherbeei_contig8593.1.1 ID=prot_P-wetherbeei_contig8593.1.1|Name=mRNA_P-wetherbeei_contig8593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MSALTSRTVLLHVYDMHSANSWLGAIGLGVHHSGVEIGGKEYTFSAQGIT
HHPPKAAASETVIFKCTIPMGSFEGSYNEVHRIVRELRDDGGFGPGTYSV
TQRNCNHFAESFCHALTGESVPAWLNRAAGVGGFFGVGGN
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mRNA from alignment at P-wetherbeei_contig8593:1837..2514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8593.1.1 ID=mRNA_P-wetherbeei_contig8593.1.1|Name=mRNA_P-wetherbeei_contig8593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig8593:1837..2514- (Phaeothamnion wetherbeei SAG_119_79)
CTCTGCTCTGGGGGCCCAATGTCGGCCCTCACGTCACGGACCGTCTTGCT CCACGTTTATGACATGCACAGTGCTAACAGCTGGCTCGGGGCCATCGGGC TTGGAGTGCACCACAGTGGAGTGGAAATTGGAGGTGAGAATTGCACGTTC CCCCTCTTGATTACAGCTTGATGCTCTCCTAAACGACTTTCGACCTGCGA AGCGAAGAAAGGAATCCGTCGTTCTTGAATCACAAAATGGCCTTCCTGGT TCCTCTGGCCCAAAACCATCGGCTATGCCCATCATCCCCCCCTTGATTAC TGTAGAACGGCATTGCTCTATTCTAATGTCCGTAAGGAGTCAACCAAATC TGCCGGAATACCGAACTTTATAGGCAAGGAGTACACGTTCAGCGCCCAGG GCATCACACACCACCCGCCCAAGGCGGCCGCCAGCGAAACTGTCATCTTC AAGTGCACCATTCCGATGGGCTCTTTCGAAGGTTCATATAATGAAGTGCA CAGGATCGTCCGTGAGCTACGCGACGATGGCGGGTTCGGCCCGGGGACGT ATTCTGTCACCCAGCGCAATTGCAACCATTTTGCGGAGAGCTTCTGCCAT GCGCTCACGGGCGAGTCGGTTCCGGCGTGGCTGAACCGCGCGGCGGGCGT CGGCGGCTTCTTCGGCGTCGGCGGCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8593:1837..2514-

>mRNA_P-wetherbeei_contig8593.1.1 ID=mRNA_P-wetherbeei_contig8593.1.1|Name=mRNA_P-wetherbeei_contig8593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig8593:1837..2514- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCCCTCACGTCACGGACCGTCTTGCTCCACGTTTATGACATGCA
CAGTGCTAACAGCTGGCTCGGGGCCATCGGGCTTGGAGTGCACCACAGTG
GAGTGGAAATTGGAGGCAAGGAGTACACGTTCAGCGCCCAGGGCATCACA
CACCACCCGCCCAAGGCGGCCGCCAGCGAAACTGTCATCTTCAAGTGCAC
CATTCCGATGGGCTCTTTCGAAGGTTCATATAATGAAGTGCACAGGATCG
TCCGTGAGCTACGCGACGATGGCGGGTTCGGCCCGGGGACGTATTCTGTC
ACCCAGCGCAATTGCAACCATTTTGCGGAGAGCTTCTGCCATGCGCTCAC
GGGCGAGTCGGTTCCGGCGTGGCTGAACCGCGCGGCGGGCGTCGGCGGCT
TCTTCGGCGTCGGCGGCAAC
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