mRNA_P-wetherbeei_contig859.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig859.1.1
Unique NamemRNA_P-wetherbeei_contig859.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A835YW81_9STRA (Coatomer protein complex, gamma sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW81_9STRA)

HSP 1 Score: 169 bits (429), Expect = 4.710e-49
Identity = 77/93 (82.80%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            FILSPRGDTIISKDYRGD VPG TD FFRKVKF E GDPPPC+NIDGVNYL+V+KNGLLF VTT+WNCSPS VIEL++RLA+VFKDYCG L+E
Sbjct:   10 FILSPRGDTIISKDYRGDVVPGGTDIFFRKVKFTEGGDPPPCMNIDGVNYLFVRKNGLLFGVTTRWNCSPSQVIELLHRLAKVFKDYCGTLTE 102
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: D8LJR2_ECTSI (Coatomer protein complex, gamma sub-unit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR2_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 6.630e-49
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            FILSPRGDTIISKDYRGDAV G TD FFRKVKFWE GDPPPC  IDGVNY+YV+KNGLLF V+T+WN SPS  +EL+NRLA+VFKDYCGVLSE
Sbjct:   10 FILSPRGDTIISKDYRGDAVAGTTDTFFRKVKFWESGDPPPCFTIDGVNYIYVRKNGLLFAVSTQWNVSPSMFLELLNRLAKVFKDYCGVLSE 102
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A7S3MBD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBD4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 4.150e-40
Identity = 61/93 (65.59%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            FILSPRGDTII+KD+RGDA+PG  D FFRKVKFW++GD PP   ID ++Y+++++N LL   TTK+N SPS  IEL+NR+A+VFKDYCGVL+E
Sbjct:   24 FILSPRGDTIINKDFRGDAIPGQQDLFFRKVKFWDKGDSPPVFQIDDISYIFIRRNQLLIVCTTKYNVSPSATIELLNRMAKVFKDYCGVLTE 116
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A4D9D754_9STRA (MHD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D754_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.340e-39
Identity = 62/93 (66.67%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            FILSPRGDTIIS+D+RGD++P A +  FRKVKFW++GD PP  ++DG+N++YV+KNGLLF  TT++N SPS  +EL+NR+A+VFKDYCGVLSE
Sbjct:    9 FILSPRGDTIISRDFRGDSLPNAAELLFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSE 101
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A662XAB1_9STRA (MHD domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAB1_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.560e-39
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            +ILS RGDTII  D+RGD    + + FFRKVKFWE+GD PP  N+DGVNYL+VKKNGL F  TT++N SPS V+EL+ RL RVFKDYCGVLSE
Sbjct:    8 YILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPAFNVDGVNYLFVKKNGLYFVATTRYNVSPSYVLELLTRLCRVFKDYCGVLSE 100
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A7S2S1C5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1C5_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.770e-38
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            FILSPRGDTII KD+RGD  PG  + FFRKVKFWE GD PP  +IDGV++++++KNGLLF  T+++N SPS  IEL++RLA+VFKDYCGVLSE
Sbjct:    8 FILSPRGDTIILKDFRGDCPPGTAEAFFRKVKFWEHGDAPPVFSIDGVHFVFIRKNGLLFVGTSRFNLSPSISIELLHRLAKVFKDYCGVLSE 100
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A6A5A6N6_9STRA (MHD domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6N6_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.030e-37
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            +ILS RGD IIS D+RGD    + + FFRKVKFW++GD PP  +IDGV+YLYVKKNGL F  TT++N SP+ ++EL++RL RVFKDYCGVLSE
Sbjct:    7 YILSNRGDAIISSDFRGDVPSDSAETFFRKVKFWDKGDAPPTFHIDGVSYLYVKKNGLYFVATTRYNLSPAYILELLSRLCRVFKDYCGVLSE 99
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A7S2UX12_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX12_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.420e-37
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            FILSPRG+TIISK YRG    GA + FFRKVKFWE GD PP  N+DG NY+Y+K+NG++F  TT +N SP+ +IEL+NR+ ++FKDYCGVLSE
Sbjct:   28 FILSPRGETIISKTYRGSFKAGAAEEFFRKVKFWEGGDAPPAFNLDGTNYIYIKRNGIIFLFTTMFNSSPATLIELLNRIIKIFKDYCGVLSE 120
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A3R6Y734_9STRA (MHD domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Y734_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.000e-37
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            +ILS RGD IIS D+RGD    + + FFRKVKFW++GD PP  NIDGV+YLYVKKNGL F  TT++N SP+ ++EL++RL RVFKDYCGVLSE
Sbjct:   32 YILSNRGDAIISSDFRGDVPSDSAETFFRKVKFWDKGDAPPTFNIDGVSYLYVKKNGLYFVATTRYNLSPAYILELLSRLCRVFKDYCGVLSE 124
[Close]
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Match: A0A024UI03_9STRA (MHD domain-containing protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UI03_9STRA)

HSP 1 Score: 137 bits (346), Expect = 8.140e-37
Identity = 61/93 (65.59%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNYLYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSE 279
            +ILS RGD IIS D+RGD    + + FFRKVKFW++GD PP  NIDGV+YLYVKKNGL F  TT++N SP+ ++EL++RL RVFKDYCGVLSE
Sbjct:    7 YILSNRGDAIISSDFRGDVPSDSAETFFRKVKFWDKGDAPPTFNIDGVSYLYVKKNGLYFVATTRYNLSPAYILELLSRLCRVFKDYCGVLSE 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig859.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YW81_9STRA4.710e-4982.80Coatomer protein complex, gamma sub-unit n=1 Tax=T... [more]
D8LJR2_ECTSI6.630e-4981.72Coatomer protein complex, gamma sub-unit n=1 Tax=E... [more]
A0A7S3MBD4_9STRA4.150e-4065.59Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D754_9STRA1.340e-3966.67MHD domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A662XAB1_9STRA3.560e-3967.74MHD domain-containing protein (Fragment) n=2 Tax=N... [more]
A0A7S2S1C5_9STRA3.770e-3867.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6A5A6N6_9STRA1.030e-3764.52MHD domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2UX12_9STRA1.420e-3764.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3R6Y734_9STRA4.000e-3765.59MHD domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A024UI03_9STRA8.140e-3765.59MHD domain-containing protein n=5 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig859contigP-wetherbeei_contig859:2..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJR2
PFAMsAdap_comp_sub,Clat_adaptor_s
Model size283
Max annot lvl2759|Eukaryota
KEGG koko:K12402
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006622,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016482,GO:0019904,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061462,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090160,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1903361,GO:1990778
Exons2
Evalue1.09e-49
EggNOG OGsKOG0937@1|root,KOG0937@2759|Eukaryota
Descriptionvesicle-mediated transport
Cds size282
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.4422646-CDS-P-wetherbeei_contig859:1..911683187048.4422646-CDS-P-wetherbeei_contig859:1..91Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig859 2..91 +
1683187048.4557388-CDS-P-wetherbeei_contig859:210..4021683187048.4557388-CDS-P-wetherbeei_contig859:210..402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig859 211..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig859.1.1prot_P-wetherbeei_contig859.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig859 2..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig859.1.1

>prot_P-wetherbeei_contig859.1.1 ID=prot_P-wetherbeei_contig859.1.1|Name=mRNA_P-wetherbeei_contig859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
FILSPRGDTIISKDYRGDAVPGATDNFFRKVKFWERGDPPPCINIDGVNY
LYVKKNGLLFCVTTKWNCSPSNVIELVNRLARVFKDYCGVLSEA
back to top

mRNA from alignment at P-wetherbeei_contig859:2..403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig859.1.1 ID=mRNA_P-wetherbeei_contig859.1.1|Name=mRNA_P-wetherbeei_contig859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig859:2..403+ (Phaeothamnion wetherbeei SAG_119_79)
TTCATCCTCTCGCCGCGTGGCGACACGATCATTAGCAAGGACTACCGCGG
CGATGCAGTGCCAGGAGCAACAGACAACTTCTTCCGCAAGGTGCATTGAA
ATTTCCCGAACGATGCAACTTCCCTTGCCGTTTCCCATTGTGCAAGCCTC
CAACGCTCGAACGAGGCGCGTCTCCGATTCACGAGTTGAACGCCCTTCCT
CACTCGCAGGTCAAGTTCTGGGAGAGGGGCGACCCGCCGCCCTGCATTAA
CATCGACGGCGTAAATTACCTCTATGTAAAAAAGAACGGACTGCTGTTTT
GTGTGACGACCAAGTGGAATTGCTCGCCGAGCAACGTGATTGAGCTCGTC
AACCGCCTCGCACGTGTCTTTAAGGACTACTGCGGTGTCCTCTCGGAGGC
AA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig859:2..403+

>mRNA_P-wetherbeei_contig859.1.1 ID=mRNA_P-wetherbeei_contig859.1.1|Name=mRNA_P-wetherbeei_contig859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig859:2..403+ (Phaeothamnion wetherbeei SAG_119_79)
TTCATCCTCTCGCCGCGTGGCGACACGATCATTAGCAAGGACTACCGCGG
CGATGCAGTGCCAGGAGCAACAGACAACTTCTTCCGCAAGGTCAAGTTCT
GGGAGAGGGGCGACCCGCCGCCCTGCATTAACATCGACGGCGTAAATTAC
CTCTATGTAAAAAAGAACGGACTGCTGTTTTGTGTGACGACCAAGTGGAA
TTGCTCGCCGAGCAACGTGATTGAGCTCGTCAACCGCCTCGCACGTGTCT
TTAAGGACTACTGCGGTGTCCTCTCGGAGGCA
back to top