mRNA_P-wetherbeei_contig8585.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8585.3.1
Unique NamemRNA_P-wetherbeei_contig8585.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.890e-33
Identity = 67/103 (65.05%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESVRRAERAADADGM 312
            SF+SCG+WLQGVRATRP+ AAP+PGVLI +KADLREG   SRAVVD  EG RFA+ENGLAYFEVSA     V  PF+HMA  FH  Y  S+R+AE  A   G 
Sbjct:  105 SFQSCGRWLQGVRATRPT-AAPMPGVLIGSKADLREG---SRAVVDAQEGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGVGGF 203
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.260e-29
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESVRRAE 288
            SFESCG+WLQGVRA  P+++APLPGV+IA K+DLREGG  +RAVV+  EG  FA +NGL YFE SA   K +  PF HMA +FH  Y +++  AE
Sbjct:  127 SFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETKEGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAE 221
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.630e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESVRRAE 288
            SF+SC KWLQGVR+TR SS   +PGVL+A K+DLREGG  SRA V   EG  FA+EN L +FE SA   K+V  PF  +A  FH+ Y ++V+RAE
Sbjct:  136 SFQSCAKWLQGVRSTRQSSM--IPGVLVANKSDLREGGINSRAAVSDEEGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAE 228
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A7S1XUM6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUM6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-22
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFH 255
            SF+SCG+WLQ +R+TRPSS  P+PGVL+A K DLR    +SRA V  +EG  FA ENGLAYFE SAL G  +  PF H+A  F+
Sbjct:  131 SFQSCGRWLQQIRSTRPSSGPPIPGVLLANKIDLRSDMLSSRAEVTESEGRGFAAENGLAYFECSALQGAGINEPFHHIANTFY 214
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.040e-17
Identity = 51/97 (52.58%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESVRRAERA 294
            SF SC KW+QGVR  R      LPGVL+A K DL E     R VVD   G  FA+ENGL YFE SAL G +   PF H+A  F + Y E+V RAE A
Sbjct:  136 SFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQRGRDFAKENGLVYFETSALQG-NYEGPFRHVAMEFAKKYEETVARAEDA 223
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A6I8RUT2_XENTR (Uncharacterized protein n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8RUT2_XENTR)

HSP 1 Score: 70.9 bits (172), Expect = 7.370e-13
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 SSFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESV 276
            SSF SC KWLQ VRA   S    LPGVL+  K D+     A R  V+R + E +A  NGL YFE SA   ++   PF+ +A AFH  Y+E V
Sbjct:  111 SSFSSCAKWLQRVRAKTFSP--QLPGVLVGNKTDM-----AGRRAVERGQAEEWAASNGLEYFETSAKELENFEQPFQALAKAFHHLYQERV 195
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A7I8VSS9_9ANNE (DgyrCDS7462 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VSS9_9ANNE)

HSP 1 Score: 68.6 bits (166), Expect = 4.580e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESVRRAE 288
            SF SC KWL  V++ +  S   +PGVL+A K DL E     R ++   EGE FA  N L YFEVSA   ++V  PF H+   ++  YRE +   E
Sbjct:   97 SFSSCSKWLSRVQSIK--SHGTVPGVLVANKVDLTE-----RRIISTKEGEEFANNNKLDYFEVSAKSMENVEQPFIHLCKRYYELYREKIEHFE 184
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-11
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVV 138
            SFESCG+WLQGVRA  PS +APLPGV+IA K+DLREGG  +RAVV
Sbjct:  127 SFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVV 171
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: UPI000359C969 (intraflagellar transport protein 27 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359C969)

HSP 1 Score: 67.4 bits (163), Expect = 1.200e-11
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRE 270
            SF SC KWL+ VRA  P++   +PG LIA K DL +     R ++   +G+  A+ N L YFE SA   ++V TPF ++A  FH+ Y E
Sbjct:   97 SFSSCVKWLERVRAQSPNT--QIPGALIANKVDLEQ-----RRIISPKKGQELAQANKLEYFECSAKEMQNVDTPFFYLANEFHKVYEE 178
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BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Match: I3NAS8_ICTTR (Intraflagellar transport 27 n=7 Tax=Marmotini TaxID=337730 RepID=I3NAS8_ICTTR)

HSP 1 Score: 65.1 bits (157), Expect = 8.890e-11
Identity = 40/91 (43.96%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:    4 SFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAEGERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESV 276
            SF SCGKWL+ VRA  P +   LPGVL+  K DL     A R  VD A+ + +A   GL  FE S    +    PF  +A  FH+ YRE V
Sbjct:   95 SFNSCGKWLEKVRAQAPGTT--LPGVLVGNKTDL-----AGRRAVDSAQAQAWALGQGLECFETSVKEMESYEAPFHCLAKQFHQLYRERV 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8585.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A835ZCC9_9STRA9.890e-3365.05IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
D7FJQ1_ECTSI5.260e-2958.95IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A7S2XVJ0_9STRA6.630e-2556.84Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1XUM6_9STRA1.100e-2258.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8J2SZ95_9STRA4.040e-1752.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6I8RUT2_XENTR7.370e-1346.74Uncharacterized protein n=1 Tax=Xenopus tropicalis... [more]
A0A7I8VSS9_9ANNE4.580e-1242.11DgyrCDS7462 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
A0A6H5KZL0_9PHAE1.000e-1175.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000359C9691.200e-1142.70intraflagellar transport protein 27 homolog n=1 Ta... [more]
I3NAS8_ICTTR8.890e-1143.96Intraflagellar transport 27 n=7 Tax=Marmotini TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8585contigP-wetherbeei_contig8585:2446..2760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJQ1
Preferred nameIFT27
PFAMsRas
Model size315
Max annot lvl2759|Eukaryota
KEGG koko:K07934
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
Exons1
Evalue8.62e-30
EggNOG OGsKOG0079@1|root,KOG0079@2759|Eukaryota
Ec32 ortholog descriptionIFT27, Ras superfamily GTPase
Ec32 orthologEc-06_010640.1
DescriptionGTPase activity
Cds size315
COG categoryS
BRITEko00000,ko03036,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.3799613-CDS-P-wetherbeei_contig8585:2445..27601683187048.3799613-CDS-P-wetherbeei_contig8585:2445..2760Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8585 2446..2760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8585.3.1prot_P-wetherbeei_contig8585.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8585 2446..2760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8585.3.1

>prot_P-wetherbeei_contig8585.3.1 ID=prot_P-wetherbeei_contig8585.3.1|Name=mRNA_P-wetherbeei_contig8585.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
SSFESCGKWLQGVRATRPSSAAPLPGVLIAAKADLREGGAASRAVVDRAE
GERFARENGLAYFEVSALHGKDVATPFEHMAGAFHRAYRESVRRAERAAD
ADGM*
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mRNA from alignment at P-wetherbeei_contig8585:2446..2760-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8585.3.1 ID=mRNA_P-wetherbeei_contig8585.3.1|Name=mRNA_P-wetherbeei_contig8585.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig8585:2446..2760- (Phaeothamnion wetherbeei SAG_119_79)
TCCTCCTTCGAGTCGTGCGGCAAGTGGCTGCAGGGCGTCCGCGCCACGCG
CCCGAGTTCTGCCGCGCCGCTCCCGGGCGTCCTGATCGCGGCCAAGGCTG
ATCTGCGGGAGGGCGGCGCCGCCTCACGTGCCGTCGTCGACCGCGCCGAG
GGGGAGCGGTTCGCACGCGAAAACGGGCTGGCGTACTTCGAGGTCTCCGC
GCTGCATGGGAAGGATGTGGCGACGCCGTTCGAGCACATGGCGGGCGCGT
TCCACCGGGCGTACCGGGAGTCAGTGCGGCGGGCGGAGCGGGCGGCCGAC
GCCGACGGCATGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8585:2446..2760-

>mRNA_P-wetherbeei_contig8585.3.1 ID=mRNA_P-wetherbeei_contig8585.3.1|Name=mRNA_P-wetherbeei_contig8585.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig8585:2446..2760- (Phaeothamnion wetherbeei SAG_119_79)
TCCTCCTTCGAGTCGTGCGGCAAGTGGCTGCAGGGCGTCCGCGCCACGCG
CCCGAGTTCTGCCGCGCCGCTCCCGGGCGTCCTGATCGCGGCCAAGGCTG
ATCTGCGGGAGGGCGGCGCCGCCTCACGTGCCGTCGTCGACCGCGCCGAG
GGGGAGCGGTTCGCACGCGAAAACGGGCTGGCGTACTTCGAGGTCTCCGC
GCTGCATGGGAAGGATGTGGCGACGCCGTTCGAGCACATGGCGGGCGCGT
TCCACCGGGCGTACCGGGAGTCAGTGCGGCGGGCGGAGCGGGCGGCCGAC
GCCGACGGCATGTAA
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