mRNA_P-wetherbeei_contig858.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig858.4.1
Unique NamemRNA_P-wetherbeei_contig858.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig858.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig858contigP-wetherbeei_contig858:4761..5607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size362
Hectar predicted targeting categoryother localisation
Exons2
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.1167154-CDS-P-wetherbeei_contig858:4761..47971683187048.1167154-CDS-P-wetherbeei_contig858:4761..4797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig858 4762..4797 -
1683187048.1297874-CDS-P-wetherbeei_contig858:5283..56071683187048.1297874-CDS-P-wetherbeei_contig858:5283..5607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig858 5284..5607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig858.4.1prot_P-wetherbeei_contig858.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig858 4762..5607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig858.4.1

>prot_P-wetherbeei_contig858.4.1 ID=prot_P-wetherbeei_contig858.4.1|Name=mRNA_P-wetherbeei_contig858.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
RQPPKERRSSDTRAPSDAEASPRKASESRTPEQLDDGPPDPLSSPRIGRL
DKNGRRNSAVERREAPALPLSAGSRLRSSSVSGGKREVPLGWTELHLAAE
MGITATIEAKLADPAMRKAV
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mRNA from alignment at P-wetherbeei_contig858:4761..5607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig858.4.1 ID=mRNA_P-wetherbeei_contig858.4.1|Name=mRNA_P-wetherbeei_contig858.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=847bp|location=Sequence derived from alignment at P-wetherbeei_contig858:4761..5607- (Phaeothamnion wetherbeei SAG_119_79)
AGACAACCGCCGAAAGAGAGGCGGTCTTCCGACACGAGGGCGCCATCAGA
TGCAGAAGCGTCGCCGAGAAAGGCTTCAGAGTCAAGAACACCCGAGCAAC
TAGACGACGGTCCGCCGGATCCGCTCTCCTCTCCGCGCATCGGCCGTCTC
GACAAGAACGGGAGACGGAATTCGGCTGTGGAGCGGCGCGAAGCGCCAGC
GCTGCCTCTCTCTGCAGGATCTAGACTGCGCTCGTCGAGTGTAAGCGGCG
GCAAGAGGGAAGTCCCGCTGGGATGGACGGAGCTTCACCTTGCAGCAGAA
ATGGGCATCACGGCGACGATTGAGGTGAGGCCGTCCGAAGCCTTCTGTAC
ATCCCCGACGCCACATTCAATACCGACAGCTCGCATTTTGAAACATTCAG
CAACCAGGTCATGTCATTTTCCGTACAACCGAAGTGCAGTCAACGTTTGA
CGATGATGCCCGTGTCGCCGTGTTTACCAACTGCATCTCTCATTAGATAG
GTAGAGAACAGTCTTCGGCTTCTTAAAACAGAGGAATTGGCTTCTGTCGA
GCAAGCGAATTGCACGAGGCGGAGATTTCTTTGTCACTGAAATGGAAATA
GGTAGGACGGGAGGCACAGGAGCTTGTTCCAACTGCCTGCCCTGCCTGCC
CTCTTGTCTGCACGTTTCGAACTCTAATCTGTCTTTTTCTTTGCTTGTTT
CCTCGTCCCTTCTGCCTTCAATTGCGCCTTGCCCATTCCCGCTGCCGCCT
CCGCCGCCGCTACCTGAACCCAATCGCTGCCTCTGGGGGGAATGCTCATA
CGCAAAACAGGCCAAGCTGGCGGACCCGGCGATGCGCAAGGCGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig858:4761..5607-

>mRNA_P-wetherbeei_contig858.4.1 ID=mRNA_P-wetherbeei_contig858.4.1|Name=mRNA_P-wetherbeei_contig858.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig858:4761..5607- (Phaeothamnion wetherbeei SAG_119_79)
AGACAACCGCCGAAAGAGAGGCGGTCTTCCGACACGAGGGCGCCATCAGA
TGCAGAAGCGTCGCCGAGAAAGGCTTCAGAGTCAAGAACACCCGAGCAAC
TAGACGACGGTCCGCCGGATCCGCTCTCCTCTCCGCGCATCGGCCGTCTC
GACAAGAACGGGAGACGGAATTCGGCTGTGGAGCGGCGCGAAGCGCCAGC
GCTGCCTCTCTCTGCAGGATCTAGACTGCGCTCGTCGAGTGTAAGCGGCG
GCAAGAGGGAAGTCCCGCTGGGATGGACGGAGCTTCACCTTGCAGCAGAA
ATGGGCATCACGGCGACGATTGAGGCCAAGCTGGCGGACCCGGCGATGCG
CAAGGCGGTA
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