mRNA_P-wetherbeei_contig858.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig858.2.1
Unique NamemRNA_P-wetherbeei_contig858.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: D8LI12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI12_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.120e-30
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  106 EDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALAAANPVQRRKWERLKA 477
            ++IR SPW LNLLA+ +RGL V EA A L++ KKKH  T  + I+N  NLAD+R+ L  ++L V +++VT+G+ +KR + MG+GRAG    ++ HLN+TL E+DFD    A P + R+ E+L A
Sbjct:   51 KEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKVVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQLKAAPSRNRR-EKLMA 173          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A6H5KPA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.290e-29
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  106 EDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALAAANPVQRRKWERLKA 477
            ++IR SPW LNLLA+ +RGL V EA A L++ KKKH  T  + I+N  NLAD+R+ L  ++L V +++VT+G+ +KR + MG+GRAG    ++ HLN+TL E+DFD    A P + R+ E+L A
Sbjct:  150 KEIRVSPWNLNLLAKLVRGLPVVEANAQLLFCKKKHTTTVAKAIQNALNLADMRYGLAAEELEVGEIFVTKGKMVKRLRIMGRGRAGIARRKWSHLNVTLREIDFDKQIKAAPSRNRR-EKLMA 272          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A6U3UCW5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3UCW5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.290e-28
Identity = 60/138 (43.48%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   85 KSVVAKKEDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDA--LAAANPVQRRKWERLKAEVRAD 492
            KS +  +++IR SPW++NL+ +   GLTVPEA+  LM+ +K  A    ++I  T NLADIR    P QL VS+ + T G  +KR K MG+GR+G    RF H+ L L E+DF    L A +  Q+RKW    A  R D
Sbjct:    2 KSYIGNEKNIRHSPWRMNLVCQFAHGLTVPEALKQLMFCQKVKAPLVAKVIRRTANLADIRDGFQPSQLEVSECFTTHGTHLKRLKIMGRGRSGKKLRRFSHIRLVLREIDFPTKILEATSINQKRKWLERLAIARED 139          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: K8YXM3_NANGC (Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXM3_NANGC)

HSP 1 Score: 108 bits (271), Expect = 2.040e-26
Identity = 58/141 (41.13%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   64 PIAARGAKSVVAKKEDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYL-RLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALAAA--NPVQRRKWERLKA 477
            PI +R  + VV++K  IR SPW++NLL RQ+RGL V EA+  L +++K+     + ++I+N  NLA+IRH L P+ L V++ +V +    K   +MGKGR G    R+ H+ + L E+DF+   AA  N  QR +WE  +A
Sbjct:   68 PIVSREMREVVSRKNRIRMSPWKINLLTRQVRGLPVVEALMQLKFSRKQKGPPLVAKVIQNAANLANIRHNLHPEDLMVAEAFVNRANIQKGIMFMGKGRFGLKLRRYSHVVVRLKEIDFEGSLAACKNRFQRARWETRRA 208          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A7S2G9V8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9V8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.650e-26
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  106 EDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALA--AANPVQRRKWERLKAEV 483
            ++I  SPW++NLLA+QLRGLTVPEA+    ++ KK  A    LIE   ++A   H +  + L+V  L+VTQG   KR K MG+GR G  ++R  HL+LT+S +DF+     A N  QRR+W+RL  E 
Sbjct:  117 KNISYSPWRMNLLAKQLRGLTVPEAIGQGKFSAKKGGAIAKSLIEKASDVALRNHGVARESLFVDTLFVTQGPGRKRIKMMGRGRTGLSFIRSSHLHLTISAIDFEKRVGEAPNGSQRRRWQRLAEEA 244          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A7S3ZQB7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQB7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.230e-26
Identity = 59/132 (44.70%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  100 KKEDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALA--AANPVQRRKWERLKAEVRA 489
            K E +R SP +LNL+A+ +R L VP+A+A L +  K+ A T    IE     A  +H L P++L + + +VT    MKR K MG+GR+GT   R GHLN+T++ +DF+A    A NP QRRKWE  +A  RA
Sbjct:   45 KHERVRHSPRKLNLIAKLVRRLWVPDALAQLQFTPKRFAPTVAAAIERCAQRAAAQHELVPEELEIERCFVTPAPFMKRLKIMGRGRSGTIRKRSGHLNVTVAAVDFEAKIRDAHNPRQRRKWEERRAVARA 176          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A7S2WS22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS22_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.410e-24
Identity = 57/138 (41.30%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   76 RGAKSVVAKKEDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFD--ALAAANPVQRRKWERLKAEV 483
            R  +SV  +  +I  SP ++NL+A+ LR LTVPEA+A   + KKK  A    LIE   ++A++++ L  DQL V +++VTQG+  K  + MG+GR G  ++R  HLN+TL+E+DF+    AA+   Q+ KW++L+A  
Sbjct:   61 RELRSVSQRFTNISYSPLRMNLVAKLLRRLTVPEALAQSTFTKKKGGAIAKDLIERCASVAEMKYGLSHDQLLVDKIFVTQGKGQKMVRTMGRGRTGIEFVRNSHLNVTLTEIDFEDRIRAASTRNQQTKWKKLEARA 198          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A7S3YCU9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCU9_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 5.370e-21
Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  112 IRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDA-LAAANPVQR---RKWERLK 474
            IR SPW+LNL+A+Q+R LTV EA A  +Y+KK  A    + +       + R+ L P++L V++ + T G RMKR + MG+G  G  + +F HL + L E+DF A +A A    R   R+W +L+
Sbjct:   65 IRVSPWKLNLVAKQVRNLTVQEAYAQTLYSKKHQARNVYKTLAKAATEMEERYGLLPEELMVAEAFATMGTRMKRVRIMGRGYHGVEHRKFAHLTVRLREIDFPARIAEAEGQSRFRARRWRKLE 189          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A1V9ZLD6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLD6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.560e-21
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   58 SLPIAARGAKSVVAKKEDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALAAANPVQRRKWERLKAEVRA 489
            SL  A    ++V   K++IR SP +L+LLA+Q+RGL V EA+  + ++ K+ AA   + ++N  NLADI + + P  L V++ +V +G  +KR K MG+GRAG  +    HL + L E +     AA P+ + K  +L    +A
Sbjct:   38 SLEDATEHFRTVRTMKKEIRVSPRKLSLLAQQIRGLPVEEALTQMTFSPKRKAAIVKKTVQNAINLADINYGIEPTNLKVAEAFVNKGLFLKRLKIMGRGRAGIKHRPHSHLTIVLKEFE----PAAVPISKTKARKLAQRAQA 177          
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Match: A0A024G8V2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8V2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.370e-20
Identity = 45/124 (36.29%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   85 KSVVAKKEDIRASPWQLNLLARQLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVSQLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALAAANPVQRR 456
            ++V   K+DIR SP +L  LA+Q+RGL   EA+  + +++K+ A      ++N  NLADIR+ + P+ L +S+ +VT+G+ +KR + MG+GR+G  +  F HL + L E + +    +   QR+
Sbjct:   62 RTVKTIKKDIRVSPRKLTYLAQQVRGLPAEEALLQMKFSRKRRATIVKATVQNAVNLADIRYNIEPENLKISEAFVTKGKYLKRLRIMGRGRSGIMHHPFSHLVIVLKEFEPEPKQRSRIAQRK 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig858.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI12_ECTSI4.120e-3047.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPA6_9PHAE2.290e-2947.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U3UCW5_9STRA2.290e-2843.48Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K8YXM3_NANGC2.040e-2641.13Ribosomal protein l22 n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S2G9V8_9STRA2.650e-2645.31Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3ZQB7_9STRA7.230e-2644.70Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WS22_9STRA1.410e-2441.30Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3YCU9_HETAK5.370e-2140.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9ZLD6_9STRA6.560e-2136.81Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024G8V2_9STRA2.370e-2036.29Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig858contigP-wetherbeei_contig858:2114..2797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI12
PFAMsRibosomal_L22
Model size492
Max annot lvl2759|Eukaryota
KEGG koko:K02890
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
Evalue6.76e-31
EggNOG OGsCOG0091@1|root,KOG1711@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L22/L17
Ec32 orthologEc-04_002820.1
Descriptionstructural constituent of ribosome
Cds size492
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187048.1583002-CDS-P-wetherbeei_contig858:2113..23531683187048.1583002-CDS-P-wetherbeei_contig858:2113..2353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig858 2114..2353 +
1683187048.175314-CDS-P-wetherbeei_contig858:2545..27971683187048.175314-CDS-P-wetherbeei_contig858:2545..2797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig858 2546..2797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig858.2.1prot_P-wetherbeei_contig858.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig858 2114..2797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig858.2.1

>prot_P-wetherbeei_contig858.2.1 ID=prot_P-wetherbeei_contig858.2.1|Name=mRNA_P-wetherbeei_contig858.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
NSSPTPSTAPKSAVQASQSSLPIAARGAKSVVAKKEDIRASPWQLNLLAR
QLRGLTVPEAVANLMYAKKKHAATYLRLIENTCNLADIRHRLPPDQLWVS
QLYVTQGRRMKRWKYMGKGRAGTGYLRFGHLNLTLSEMDFDALAAANPVQ
RRKWERLKAEVRAD
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mRNA from alignment at P-wetherbeei_contig858:2114..2797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig858.2.1 ID=mRNA_P-wetherbeei_contig858.2.1|Name=mRNA_P-wetherbeei_contig858.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig858:2114..2797+ (Phaeothamnion wetherbeei SAG_119_79)
AATAGCAGCCCCACTCCTTCAACAGCGCCAAAAAGCGCCGTCCAGGCGTC GCAGTCGTCCCTGCCGATCGCAGCGCGTGGCGCAAAGAGCGTTGTCGCAA AGAAGGAGGACATTCGAGCGAGCCCCTGGCAGCTGAACCTTTTGGCGAGA CAGCTTCGAGGGCTCACCGTGCCCGAGGCCGTTGCCAACCTGATGTACGC CAAAAAAAAGCACGCCGCGACCTATTTGCGACTCATTGAGGTCGGTCAGC TTCCTTTCAAGAAGTAGTTCCTGCATTTTTTCGCAGCACGACAATATACG CAAGTGTCGCCCGCCAGCCTCGCCTCGGTACGCTGAGAATTTTGGTGATC GAACGGAAGCTTCAGAGTTTTACACCCATTTCTGTTCGTAATGACGGCAC CTCACTTCCCTCCGTGCTTTCTCTCTTCGCAGAACACGTGCAACTTGGCG GACATCCGGCACCGTCTTCCCCCCGACCAGCTGTGGGTCTCCCAGCTCTA CGTGACGCAGGGCCGCCGCATGAAGCGCTGGAAGTACATGGGCAAGGGCC GCGCCGGCACGGGCTACCTGCGCTTCGGTCATCTCAACCTGACGCTCTCC GAGATGGACTTCGACGCCCTCGCGGCCGCCAACCCGGTCCAGCGGCGGAA GTGGGAGCGTCTGAAGGCCGAGGTGAGAGCAGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig858:2114..2797+

>mRNA_P-wetherbeei_contig858.2.1 ID=mRNA_P-wetherbeei_contig858.2.1|Name=mRNA_P-wetherbeei_contig858.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig858:2114..2797+ (Phaeothamnion wetherbeei SAG_119_79)
AATAGCAGCCCCACTCCTTCAACAGCGCCAAAAAGCGCCGTCCAGGCGTC
GCAGTCGTCCCTGCCGATCGCAGCGCGTGGCGCAAAGAGCGTTGTCGCAA
AGAAGGAGGACATTCGAGCGAGCCCCTGGCAGCTGAACCTTTTGGCGAGA
CAGCTTCGAGGGCTCACCGTGCCCGAGGCCGTTGCCAACCTGATGTACGC
CAAAAAAAAGCACGCCGCGACCTATTTGCGACTCATTGAGAACACGTGCA
ACTTGGCGGACATCCGGCACCGTCTTCCCCCCGACCAGCTGTGGGTCTCC
CAGCTCTACGTGACGCAGGGCCGCCGCATGAAGCGCTGGAAGTACATGGG
CAAGGGCCGCGCCGGCACGGGCTACCTGCGCTTCGGTCATCTCAACCTGA
CGCTCTCCGAGATGGACTTCGACGCCCTCGCGGCCGCCAACCCGGTCCAG
CGGCGGAAGTGGGAGCGTCTGAAGGCCGAGGTGAGAGCAGAT
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