mRNA_P-wetherbeei_contig8574.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8574.1.1
Unique NamemRNA_P-wetherbeei_contig8574.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: A0A836CJW3_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.490e-12
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    7 LGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELTA 168
            LG+  GA    VRRAYYR SL WHPDRW RHP  A  AQAVFE V+ AYAEL A
Sbjct:  695 LGLGEGASGGDVRRAYYRESLRWHPDRWARHPALAERAQAVFELVSEAYAELRA 748
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: A0A7S2SUI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUI0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.110e-10
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    7 LGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELTALPPAG 183
            LG+   A    VR+AYYR SL WHPDRW  +PLH  LAQ  FE ++ AY +L +L   G
Sbjct:  236 LGLSSTASARDVRKAYYRQSLVWHPDRWASYPLHRRLAQDAFEVISEAYRQLVSLSSGG 294
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: A0A7S2SUF7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUF7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.100e-10
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    7 LGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELTALPPAG 183
            LG+   A    VR+AYYR SL WHPDRW  +PLH  LAQ  FE ++ AY +L +L   G
Sbjct:  596 LGLSSTASARDVRKAYYRQSLVWHPDRWASYPLHRRLAQDAFEVISEAYRQLVSLSSGG 654
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: D7FNL6_ECTSI (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNL6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.280e-8
Identity = 28/49 (57.14%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    7 LGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAY 153
            LGV+  A    +RRAYYR SL WHPDRW R+ +H+  AQ VFE V  AY
Sbjct:  708 LGVDRDASGRELRRAYYRQSLLWHPDRWVRYAIHSARAQDVFELVGDAY 756
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: M4CUQ8_BRARP (J domain-containing protein n=6 Tax=Brassica TaxID=3705 RepID=M4CUQ8_BRARP)

HSP 1 Score: 53.5 bits (127), Expect = 3.420e-7
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:    7 LGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELT 165
            LGV   +    +RRAYY+L++ WHPDRW + PL A  A+  F+ +  AY+ L+
Sbjct:   16 LGVAVNSSAEQIRRAYYKLAMKWHPDRWTKDPLRAGEAKRRFQQIQEAYSVLS 68
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: A0A059D7K2_EUCGR (J domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059D7K2_EUCGR)

HSP 1 Score: 53.1 bits (126), Expect = 6.420e-7
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    4 VLGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELT 165
            VLGV PG+    +RRAY +L++ WHPDRW R+P     A+  F+ +  AY  L+
Sbjct:   23 VLGVAPGSSLEEIRRAYRKLAMQWHPDRWTRNPSLLGEAKRKFQQIQEAYEVLS 76
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: UPI0011D2B361 (uncharacterized protein LOC115670634 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2B361)

HSP 1 Score: 53.1 bits (126), Expect = 6.420e-7
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 VLGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELT 165
            +LG+ PG+    +RRAY +L++ WHPDRW R+P  +  A+  F+ +  AY  L+
Sbjct:   23 ILGIAPGSSLEEIRRAYRKLAMQWHPDRWTRNPSLSGEAKRKFQQIQEAYEVLS 76
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: A0A5J5BK98_9ASTE (J domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BK98_9ASTE)

HSP 1 Score: 51.6 bits (122), Expect = 1.560e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    4 VLGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELT 165
            VLG+   A  A +RRAY +L+L WHPDRW R P  A  A+  F+ +  AY+ L+
Sbjct:   17 VLGICKQASEAEIRRAYRKLALKWHPDRWMRDPTIAGEAKQRFQQIQEAYSVLS 70
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: V4KLF4_EUTSA (J domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KLF4_EUTSA)

HSP 1 Score: 51.2 bits (121), Expect = 1.570e-6
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 VLGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELT 165
            +LGV   +    +RRAY++L++ WHPDRW + PL +  A+  F+ +  AY+ L+
Sbjct:   16 ILGVAVDSSAEKIRRAYHKLAMKWHPDRWTKDPLRSVEAKRRFQQIQEAYSVLS 69
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BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Match: V4KAL3_EUTSA (J domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KAL3_EUTSA)

HSP 1 Score: 51.2 bits (121), Expect = 2.190e-6
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    4 VLGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAAYAELT 165
            +LGV   +    +RRAY++L++ WHPDRW + PL +  A+  F+ +  AY+ L+
Sbjct:   16 ILGVAVDSSAEKIRRAYHKLAMKWHPDRWTKDPLRSVEAKRRFQQIQEAYSVLS 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8574.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJW3_9STRA1.490e-1266.67J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A7S2SUI0_9STRA3.110e-1050.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2SUF7_9STRA4.100e-1050.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FNL6_ECTSI1.280e-857.14J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
M4CUQ8_BRARP3.420e-743.40J domain-containing protein n=6 Tax=Brassica TaxID... [more]
A0A059D7K2_EUCGR6.420e-744.44J domain-containing protein n=2 Tax=Eucalyptus gra... [more]
UPI0011D2B3616.420e-740.74uncharacterized protein LOC115670634 n=1 Tax=Syzyg... [more]
A0A5J5BK98_9ASTE1.560e-646.30J domain-containing protein n=1 Tax=Nyssa sinensis... [more]
V4KLF4_EUTSA1.570e-638.89J domain-containing protein n=1 Tax=Eutrema salsug... [more]
V4KAL3_EUTSA2.190e-638.89J domain-containing protein n=1 Tax=Eutrema salsug... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8574contigP-wetherbeei_contig8574:742..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNL6
PFAMsDnaJ
Model size186
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-09
EggNOG OGs29M4M@1|root,2RUDY@2759|Eukaryota
Ec32 ortholog descriptionDnaJ domain
Ec32 orthologEc-01_005020.1
DescriptionDnaJ molecular chaperone homology domain
Cds size186
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.9560103-CDS-P-wetherbeei_contig8574:741..9271683187047.9560103-CDS-P-wetherbeei_contig8574:741..927Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8574 742..927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8574.1.1prot_P-wetherbeei_contig8574.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8574 742..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8574.1.1

>prot_P-wetherbeei_contig8574.1.1 ID=prot_P-wetherbeei_contig8574.1.1|Name=mRNA_P-wetherbeei_contig8574.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MVLGVEPGAGRAAVRRAYYRLSLAWHPDRWPRHPLHAPLAQAVFEHVAAA
YAELTALPPAG*
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mRNA from alignment at P-wetherbeei_contig8574:742..927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8574.1.1 ID=mRNA_P-wetherbeei_contig8574.1.1|Name=mRNA_P-wetherbeei_contig8574.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig8574:742..927+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGGGCGTTGAGCCCGGCGCTGGCCGCGCCGCCGTCCGGCGGGC
GTACTACCGGCTGTCGCTGGCGTGGCACCCGGACCGCTGGCCGCGGCACC
CACTGCACGCGCCGCTGGCGCAAGCCGTCTTCGAGCATGTGGCCGCCGCC
TACGCCGAGCTCACGGCGCTGCCGCCCGCCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8574:742..927+

>mRNA_P-wetherbeei_contig8574.1.1 ID=mRNA_P-wetherbeei_contig8574.1.1|Name=mRNA_P-wetherbeei_contig8574.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig8574:742..927+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGGGCGTTGAGCCCGGCGCTGGCCGCGCCGCCGTCCGGCGGGC
GTACTACCGGCTGTCGCTGGCGTGGCACCCGGACCGCTGGCCGCGGCACC
CACTGCACGCGCCGCTGGCGCAAGCCGTCTTCGAGCATGTGGCCGCCGCC
TACGCCGAGCTCACGGCGCTGCCGCCCGCCGGATGA
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