mRNA_P-wetherbeei_contig8569.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8569.1.1
Unique NamemRNA_P-wetherbeei_contig8569.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig8569.1.1 vs. uniprot
Match: D7FK77_ECTSI (Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK77_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.290e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 VGVMFLCEAALGCEATIMQDKRSLTREPAGHDSAVVRGRREPPATADEMLVLNDMSVAVPQAGSMPMPAFAGSSFMNS 234
            +G+MFLCEAALG EA+I  D   LT+ P G+DS V RG +EP  + D ++ ++  SV+VPQ      P + GS F NS
Sbjct:  852 LGIMFLCEAALGNEASITVDDWKLTKPPQGYDSIVARGWQEPDPSKDVVITIDGKSVSVPQGKPKTQPKYKGSRFSNS 929
[Close]
BLAST of mRNA_P-wetherbeei_contig8569.1.1 vs. uniprot
Match: A0A521TVT0_9DELT (WGR domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521TVT0_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 4.610e-10
Identity = 37/77 (48.05%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:    4 GVMFLCEAALGCEATIMQDKRSLTREPAGHDSAVVRGRREPPATADEMLVLNDMSVAVPQAGSMPMPAFAGSSFMNS 234
            GVMFL EAALG E +I++D  SL   P G+DS V RG  EP    D  + L+   V VPQ   + +PA A SSF  S
Sbjct:  423 GVMFLAEAALGKEHSILKDDSSLKEAPKGYDSIVARGHTEPDPQHDITITLDGKKVVVPQGKPIKVPAHAKSSFTQS 499
[Close]
BLAST of mRNA_P-wetherbeei_contig8569.1.1 vs. uniprot
Match: C3Z2P3_BRAFL (Poly [ADP-ribose] polymerase (Fragment) n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Z2P3_BRAFL)

HSP 1 Score: 56.6 bits (135), Expect = 3.210e-7
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 1 
Query:    1 VGVMFLCEAALGCEATIMQDKRSLTREPAGHDSAVVRGRREPPATADEMLVLNDMSVAVPQAGSMPMPAFAGSSFMNS 234
            VG+MFL E ALG E  I +D  SLT+ PAG DS V  GR+EP    +  + L+  +V VPQ   +       SSF  S
Sbjct:  417 VGIMFLNEVALGKENRITRDDSSLTKPPAGFDSVVAVGRKEPDPKKNTTMKLDGRTVVVPQGQPINQTEGQSSSFSQS 494
[Close]
BLAST of mRNA_P-wetherbeei_contig8569.1.1 vs. uniprot
Match: UPI0006B0DA2D (poly [ADP-ribose] polymerase 3-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DA2D)

HSP 1 Score: 54.7 bits (130), Expect = 1.540e-6
Identity = 32/78 (41.03%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:    1 VGVMFLCEAALGCEATIMQDKRSLTREPAGHDSAVVRGRREPPATADEMLVLNDMSVAVPQAGSMPMPAFAGSSFMNS 234
            +G+MFL E ALG E  I QD  SL + PAG DS +  G +EP       L L+   V VPQ   + M  +  S F  S
Sbjct:  490 IGIMFLSEVALGKEKVITQDDPSLVKPPAGFDSVLAHGCKEPDPKKHTYLELDGAKVIVPQGKPITMSQYNKSCFSQS 567
[Close]
BLAST of mRNA_P-wetherbeei_contig8569.1.1 vs. uniprot
Match: A0A6A7G868_9CRUS (Poly [ADP-ribose] polymerase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G868_9CRUS)

HSP 1 Score: 53.1 bits (126), Expect = 5.350e-6
Identity = 30/77 (38.96%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:    4 GVMFLCEAALGCEATIMQDKRSLTREPAGHDSAVVRGRREPPATADEMLVLNDMSVAVPQAGSMPMPAFAGSSFMNS 234
            G MFL E  LG    IMQ   S+ + PAG+DS V RGR+EP    +  +  +   V VP    +P   F  S+F  S
Sbjct:  460 GFMFLSEVVLGRSKEIMQIDGSIKKAPAGYDSVVARGRKEPDPKKNTTITFDGRKVTVPVGKPIPQQPFKDSNFGQS 536
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8569.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FK77_ECTSI1.290e-1247.44Poly [ADP-ribose] polymerase n=2 Tax=Ectocarpus Ta... [more]
A0A521TVT0_9DELT4.610e-1048.05WGR domain-containing protein n=1 Tax=Myxococcacea... [more]
C3Z2P3_BRAFL3.210e-743.59Poly [ADP-ribose] polymerase (Fragment) n=4 Tax=Br... [more]
UPI0006B0DA2D1.540e-641.03poly [ADP-ribose] polymerase 3-like n=1 Tax=Limulu... [more]
A0A6A7G868_9CRUS5.350e-638.96Poly [ADP-ribose] polymerase n=1 Tax=Hirondellea g... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8569contigP-wetherbeei_contig8569:168..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog31033.ENSTRUP00000005989
Preferred namePARP3
PFAMsPARP,PARP_reg,WGR
Model size292
Max annot lvl33208|Metazoa
KEGG koko:K10798
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000723,GO:0003674,GO:0003824,GO:0003909,GO:0003910,GO:0003950,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005814,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006464,GO:0006471,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0015630,GO:0016043,GO:0016070,GO:0016740,GO:0016757,GO:0016763,GO:0016874,GO:0016886,GO:0019219,GO:0019222,GO:0019538,GO:0022616,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0032200,GO:0032886,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045934,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051103,GO:0051105,GO:0051106,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051338,GO:0051348,GO:0051493,GO:0051641,GO:0051716,GO:0051726,GO:0051972,GO:0051974,GO:0060236,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070507,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090224,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901564,GO:1901576,GO:1905661,GO:1905662,GO:1990166,GO:2000112,GO:2000113,GO:2000278,GO:2000279
Exons1
Evalue2.2e-12
EggNOG OGsKOG1037@1|root,KOG1037@2759|Eukaryota,38E97@33154|Opisthokonta,3BJ20@33208|Metazoa,3CUAT@33213|Bilateria,48AUU@7711|Chordata,490DS@7742|Vertebrata,4A20Z@7898|Actinopterygii
EC2.4.2.30
DescriptionPoly (ADP-ribose) polymerase
Cds size282
COG categoryKLO
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.6585183-UTR-P-wetherbeei_contig8569:167..1761683187047.6585183-UTR-P-wetherbeei_contig8569:167..176Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8569 168..176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.6692884-CDS-P-wetherbeei_contig8569:176..4581683187047.6692884-CDS-P-wetherbeei_contig8569:176..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8569 177..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8569.1.1prot_P-wetherbeei_contig8569.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8569 177..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8569.1.1

>prot_P-wetherbeei_contig8569.1.1 ID=prot_P-wetherbeei_contig8569.1.1|Name=mRNA_P-wetherbeei_contig8569.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
MFLCEAALGCEATIMQDKRSLTREPAGHDSAVVRGRREPPATADEMLVLN
DMSVAVPQAGSMPMPAFAGSSFMNSRVPAVFRGPAASALRAPHR
back to top

mRNA from alignment at P-wetherbeei_contig8569:168..458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8569.1.1 ID=mRNA_P-wetherbeei_contig8569.1.1|Name=mRNA_P-wetherbeei_contig8569.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig8569:168..458+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCGTCATGTTCCTGTGCGAAGCCGCGCTGGGCTGTGAAGCGACAAT
CATGCAGGATAAGCGGTCGCTAACACGAGAGCCGGCGGGCCACGACAGCG
CCGTGGTGCGTGGGCGCCGCGAGCCGCCGGCCACGGCGGACGAGATGCTG
GTGCTAAACGACATGTCGGTGGCGGTGCCGCAGGCGGGGTCGATGCCGAT
GCCGGCGTTCGCGGGCTCGTCGTTCATGAACTCGAGAGTTCCTGCTGTAT
TCCGAGGCCCAGCTGCGTCTGCGCTACGTGCTCCCCATCGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8569:168..458+

>mRNA_P-wetherbeei_contig8569.1.1 ID=mRNA_P-wetherbeei_contig8569.1.1|Name=mRNA_P-wetherbeei_contig8569.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig8569:168..458+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCTGTGCGAAGCCGCGCTGGGCTGTGAAGCGACAATCATGCAGGA
TAAGCGGTCGCTAACACGAGAGCCGGCGGGCCACGACAGCGCCGTGGTGC
GTGGGCGCCGCGAGCCGCCGGCCACGGCGGACGAGATGCTGGTGCTAAAC
GACATGTCGGTGGCGGTGCCGCAGGCGGGGTCGATGCCGATGCCGGCGTT
CGCGGGCTCGTCGTTCATGAACTCGAGAGTTCCTGCTGTATTCCGAGGCC
CAGCTGCGTCTGCGCTACGTGCTCCCCATCGA
back to top