mRNA_P-wetherbeei_contig8565.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8565.2.1
Unique NamemRNA_P-wetherbeei_contig8565.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8565.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8565contigP-wetherbeei_contig8565:1797..2210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1195236.CTER_4182
PFAMsDUF4340
Model size414
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.8e-05
EggNOG OGs2E8G1@1|root,332UC@2|Bacteria,1VHP4@1239|Firmicutes,24S90@186801|Clostridia,3WH0V@541000|Ruminococcaceae
DescriptionDomain of unknown function (DUF4340)
Cds size414
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.5386188-CDS-P-wetherbeei_contig8565:1796..22101683187047.5386188-CDS-P-wetherbeei_contig8565:1796..2210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8565 1797..2210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8565.2.1prot_P-wetherbeei_contig8565.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8565 1797..2210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8565.2.1

>prot_P-wetherbeei_contig8565.2.1 ID=prot_P-wetherbeei_contig8565.2.1|Name=mRNA_P-wetherbeei_contig8565.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
LTCISGFYYLITTRAHTSVPPVTPKPLFSSIQVSDISSANITQTKSGEIT
ELRHQDGLWVLEAKQRRLLQTDVMNSLFKNLADLYATPLYSQSNAPLELA
DFGLQPPLSTVEVRLNDGRLQILEVGNPLPDKSGQYVK
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mRNA from alignment at P-wetherbeei_contig8565:1797..2210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8565.2.1 ID=mRNA_P-wetherbeei_contig8565.2.1|Name=mRNA_P-wetherbeei_contig8565.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig8565:1797..2210- (Phaeothamnion wetherbeei SAG_119_79)
CTGACCTGTATTTCTGGATTCTACTACCTGATAACAACGAGGGCGCACAC
CTCAGTCCCACCCGTAACCCCGAAACCTCTATTCAGTTCGATTCAAGTCT
CCGATATTTCTTCAGCTAACATAACGCAAACGAAAAGCGGAGAAATCACA
GAATTACGTCACCAAGACGGGCTTTGGGTGCTGGAGGCCAAGCAAAGAAG
GCTGCTCCAAACGGACGTGATGAATTCGCTCTTCAAGAATCTCGCCGATC
TTTATGCCACACCACTATACTCGCAGAGCAACGCTCCACTGGAACTCGCG
GACTTTGGCTTACAGCCGCCGCTCTCCACAGTCGAAGTAAGGCTCAATGA
CGGTCGATTGCAAATCCTCGAAGTCGGCAATCCTTTGCCAGACAAATCTG
GTCAATACGTCAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8565:1797..2210-

>mRNA_P-wetherbeei_contig8565.2.1 ID=mRNA_P-wetherbeei_contig8565.2.1|Name=mRNA_P-wetherbeei_contig8565.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig8565:1797..2210- (Phaeothamnion wetherbeei SAG_119_79)
CTGACCTGTATTTCTGGATTCTACTACCTGATAACAACGAGGGCGCACAC
CTCAGTCCCACCCGTAACCCCGAAACCTCTATTCAGTTCGATTCAAGTCT
CCGATATTTCTTCAGCTAACATAACGCAAACGAAAAGCGGAGAAATCACA
GAATTACGTCACCAAGACGGGCTTTGGGTGCTGGAGGCCAAGCAAAGAAG
GCTGCTCCAAACGGACGTGATGAATTCGCTCTTCAAGAATCTCGCCGATC
TTTATGCCACACCACTATACTCGCAGAGCAACGCTCCACTGGAACTCGCG
GACTTTGGCTTACAGCCGCCGCTCTCCACAGTCGAAGTAAGGCTCAATGA
CGGTCGATTGCAAATCCTCGAAGTCGGCAATCCTTTGCCAGACAAATCTG
GTCAATACGTCAAG
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