mRNA_P-wetherbeei_contig8565.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8565.1.1
Unique NamemRNA_P-wetherbeei_contig8565.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8565.1.1 vs. uniprot
Match: A0A7X8XQU8_9BURK (Glycosyltransferase family 39 protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XQU8_9BURK)

HSP 1 Score: 109 bits (272), Expect = 3.340e-24
Identity = 63/202 (31.19%), Postives = 102/202 (50.50%), Query Frame = 1 
Query:    4 IFLFFGLCMIVGTGRFGAYFNYYLEFHLAVSILSGLAWSEEGGRPPG----LDLVVFLHALLPGMFLSQGYLLCASDIVKLEIVPYFRGDVNLWFAMGAKRQVALQPILSQKPTRVVAENAGDWIIWGIPTWYCDPSTYFGMEQNGRWDEEPMLQLIREGQIDAVVLERIEGNSRFSPVFLQTVQQFYQQVNNSPESLVFVP 597
            +FL   L + +G+GR G ++NY LE HLA+S+LSGL W       PG    + L++ L   L G+     YL    D ++ E     RG+   W    A+    +   L + P  ++AEN  +  + G   W  DP   F + ++GRW+ EP+L+ +   +   + L+ +EGN RFSP  +  +Q  Y+ V  +   L+ +P
Sbjct:  288 LFLAASLPIALGSGRQGGFYNYCLELHLALSLLSGLGWQTAAQGRPGRACAVALLLMLQVALGGVSRLPPYLFSPWDHLRFETGFVLRGEDPPW-RKQARDAGGIAAWLERNPGPILAENLANPTLLGRTPWVVDPMILFTLARDGRWNPEPVLERVERQEFAVIFLQVLEGNIRFSPEAIARIQARYRVVGRAGVDLILLP 488
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BLAST of mRNA_P-wetherbeei_contig8565.1.1 vs. uniprot
Match: A0A1E4F813_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4F813_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 7.480e-13
Identity = 54/207 (26.09%), Postives = 103/207 (49.76%), Query Frame = 1 
Query:   22 LCMIVGTGRFGAYFNYYLEFHLAVSILSGLAWSEEGGRPPGLDLVVFLHALLPGMFLSQGYLLCAS--DIVKLEIVPYFRGDVNLWFAMGAKRQVALQPILSQKPTRVVAENAGDWIIWGIPTWYCDP-STYFGMEQNGRWDEEPMLQLIREGQIDAVVLERIEGNSRFSPV-FLQTVQQFYQQVNNSPES--LVFVPKEKASLYRP 624
            L  +    + GAY+NY+LE H A+S+L+ LA S   G+         L AL  G+  +  + +  S  D  + E      G    W     +    L+ +L+  P  V+AE  G+ +++G     CD  + +F + + G WD  P+L+++R  +I  V+++R++ ++   PV  L+ + + Y+ + +  ++   + VPK+ A   +P
Sbjct:  268 LLPVAAAAKQGAYYNYFLELHWALSMLAALALSRRPGK-----WTATLAALQLGVGATSHFPILESPVDYWRYETTACLAGREPHWVTR-MRGYDQLREVLAAHPGPVLAEQCGNPLLFGREPIVCDCYALFFDLARAGAWDPTPILEMLRRREISVVLIQRLDQSNLRVPVPILECILENYEVIGHIGKAGDYILVPKQAAKSSQP 468
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BLAST of mRNA_P-wetherbeei_contig8565.1.1 vs. uniprot
Match: A0A2H0QEP6_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_44_7 TaxID=1973901 RepID=A0A2H0QEP6_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 9.630e-6
Identity = 49/197 (24.87%), Postives = 84/197 (42.64%), Query Frame = 1 
Query:    4 IFLFFGLCMIVGTGRFGAYFNYYLEFHLAVSILSGLAWSEEGGRPPGLDLVVFLHALLPGMFLSQGYLLCASDIVKLEIVPYFRGDVNL-WFAM--GAKRQVALQPILSQKPTRVVAENAGDWIIW---GIPTWYCDPSTYFGMEQNGRWDEEPMLQLIREGQIDAVVLERIEGNSRFSPVFLQTVQQFYQQVNNSP 576
            +F  F L M +  G+FGA +NYYLEF    S++ GLA            L  FL  +    +++   L+  +  V+L +      D+N  W     G   ++A   I+     ++  E   D ++         Y  P     M + G WDE  M+  I   ++   V      + R+S  F++ V++ Y+Q  ++P
Sbjct:  297 LFWIFALIMSLSIGKFGANYNYYLEFITVNSLVFGLA------------LAWFLQNINDKRYIAVNMLIILTLFVQLILSVT---DINRPWHVQKQGLLEKIADSEIIIPNLQKIKGEIVADNMVLLYNADRRLYFQPIMMTHMHEIGAWDESAMIADIENKRLGGFVFNDFNCDERYSREFMRAVKENYKQTLSTP 478
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8565.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7X8XQU8_9BURK3.340e-2431.19Glycosyltransferase family 39 protein n=1 Tax=Burk... [more]
A0A1E4F813_9BACT7.480e-1326.09Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
A0A2H0QEP6_9PROT9.630e-624.87Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8565contigP-wetherbeei_contig8565:215..859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size645
Hectar predicted targeting categoryother localisation
Exons1
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.4869888-UTR-P-wetherbeei_contig8565:214..2411683187047.4869888-UTR-P-wetherbeei_contig8565:214..241Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8565 215..241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.498833-CDS-P-wetherbeei_contig8565:241..8591683187047.498833-CDS-P-wetherbeei_contig8565:241..859Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8565 242..859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8565.1.1prot_P-wetherbeei_contig8565.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8565 242..859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8565.1.1

>prot_P-wetherbeei_contig8565.1.1 ID=prot_P-wetherbeei_contig8565.1.1|Name=mRNA_P-wetherbeei_contig8565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
MIVGTGRFGAYFNYYLEFHLAVSILSGLAWSEEGGRPPGLDLVVFLHALL
PGMFLSQGYLLCASDIVKLEIVPYFRGDVNLWFAMGAKRQVALQPILSQK
PTRVVAENAGDWIIWGIPTWYCDPSTYFGMEQNGRWDEEPMLQLIREGQI
DAVVLERIEGNSRFSPVFLQTVQQFYQQVNNSPESLVFVPKEKASLYRPD
LVPKT*
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mRNA from alignment at P-wetherbeei_contig8565:215..859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8565.1.1 ID=mRNA_P-wetherbeei_contig8565.1.1|Name=mRNA_P-wetherbeei_contig8565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig8565:215..859+ (Phaeothamnion wetherbeei SAG_119_79)
CTCATCTTTCTCTTCTTTGGGCTTTGCATGATTGTTGGAACGGGACGTTT
CGGAGCTTATTTTAACTACTACCTGGAGTTTCACCTGGCAGTCTCTATCC
TGAGTGGTCTTGCTTGGTCTGAGGAAGGAGGTCGACCGCCTGGGCTGGAC
CTGGTTGTTTTTCTCCACGCTTTGCTCCCTGGAATGTTTTTGAGCCAGGG
GTATTTGCTCTGCGCTAGCGATATCGTAAAACTTGAGATCGTCCCCTACT
TCCGCGGAGACGTAAATCTCTGGTTTGCCATGGGCGCGAAGCGACAAGTG
GCGCTCCAGCCGATTCTCTCCCAGAAGCCCACGCGAGTCGTCGCCGAAAA
TGCCGGCGATTGGATTATCTGGGGAATACCCACCTGGTATTGCGACCCCT
CCACATATTTTGGTATGGAACAAAATGGTCGCTGGGATGAAGAACCGATG
CTGCAACTCATTCGAGAAGGTCAGATTGATGCAGTTGTATTGGAACGAAT
TGAGGGAAATTCACGGTTTTCCCCTGTTTTTTTGCAGACCGTGCAGCAAT
TCTATCAACAAGTCAACAATTCGCCCGAGTCGCTGGTCTTTGTGCCGAAA
GAAAAGGCTAGCCTTTATAGGCCTGACTTAGTGCCAAAGACGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8565:215..859+

>mRNA_P-wetherbeei_contig8565.1.1 ID=mRNA_P-wetherbeei_contig8565.1.1|Name=mRNA_P-wetherbeei_contig8565.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig8565:215..859+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGTTGGAACGGGACGTTTCGGAGCTTATTTTAACTACTACCTGGA
GTTTCACCTGGCAGTCTCTATCCTGAGTGGTCTTGCTTGGTCTGAGGAAG
GAGGTCGACCGCCTGGGCTGGACCTGGTTGTTTTTCTCCACGCTTTGCTC
CCTGGAATGTTTTTGAGCCAGGGGTATTTGCTCTGCGCTAGCGATATCGT
AAAACTTGAGATCGTCCCCTACTTCCGCGGAGACGTAAATCTCTGGTTTG
CCATGGGCGCGAAGCGACAAGTGGCGCTCCAGCCGATTCTCTCCCAGAAG
CCCACGCGAGTCGTCGCCGAAAATGCCGGCGATTGGATTATCTGGGGAAT
ACCCACCTGGTATTGCGACCCCTCCACATATTTTGGTATGGAACAAAATG
GTCGCTGGGATGAAGAACCGATGCTGCAACTCATTCGAGAAGGTCAGATT
GATGCAGTTGTATTGGAACGAATTGAGGGAAATTCACGGTTTTCCCCTGT
TTTTTTGCAGACCGTGCAGCAATTCTATCAACAAGTCAACAATTCGCCCG
AGTCGCTGGTCTTTGTGCCGAAAGAAAAGGCTAGCCTTTATAGGCCTGAC
TTAGTGCCAAAGACGTAA
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