mRNA_P-wetherbeei_contig8563.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8563.2.1
Unique NamemRNA_P-wetherbeei_contig8563.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8563.2.1 vs. uniprot
Match: A0A3C0TXY5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXY5_9PROT)

HSP 1 Score: 101 bits (251), Expect = 1.460e-25
Identity = 60/110 (54.55%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:   10 MSNITNIAVSGIRAAGVRFAAHAENIANTNSTGYTALRPEQISTAAGPVVRVTRPDKARPNAQQSENAAPSDVDLASEFAHLIALKYDYKAAVKLLRAADEVSGKLLDIL 339
            MS+  NI +SG+RAA  RFA  AENIAN   +GY   R EQ+STA GPVVRV+R +K R   Q  E      V+LA E A LIA K DYK A+ +LR   EV G LLDIL
Sbjct:    1 MSSALNITLSGLRAAETRFAVRAENIANAGVSGYAPQRAEQVSTATGPVVRVSRTEKPRQERQNEEA-----VNLAEEIAGLIAAKQDYKTAIAVLRIEQEVRGALLDIL 105
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BLAST of mRNA_P-wetherbeei_contig8563.2.1 vs. uniprot
Match: A0A2N6EUW1_9DELT (Flagellar biosynthesis protein FlgC n=1 Tax=Desulfuromonas sp. TaxID=892 RepID=A0A2N6EUW1_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 5.520e-8
Identity = 38/110 (34.55%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    7 LMSNITNIAVSGIRAAGVRFAAHAENIANTNSTGYTALRPEQISTAAGPV-VRVTRPDKARPNAQQSENAAPSDVDLASEFAHLIALKYDYKAAVKLLRAADEVSGKLLD 333
            +M +    AVSG++A  +R  + A N+AN+ + GYT           G V  ++ +P  A  ++Q  EN A S VDLA E  +++  K  Y A +K +  AD ++G LLD
Sbjct:    2 IMIDAMGSAVSGLQAQSLRLNSTANNVANSQTEGYTPSTVTMTEAEQGGVRAQLQKPVTANDSSQSVENPA-SKVDLAKEMVNMMQTKQFYSANLKTVSVADSMTGDLLD 110
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BLAST of mRNA_P-wetherbeei_contig8563.2.1 vs. uniprot
Match: A0A514EE08_XANCT (Flg_bb_rod domain-containing protein n=1 Tax=Xanthomonas translucens pv. cerealis TaxID=152263 RepID=A0A514EE08_XANCT)

HSP 1 Score: 52.0 bits (123), Expect = 2.660e-6
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 1 
Query:    1 LSLMSNITNIAVSGIRAAGVRFAAHAENIANTNSTGYTALRPEQISTAAGPVVRVTRPDKARPNAQQSENAAPSDVDLASEFAHLIALKYDYKAAVKLLRAADEVSGKLLDILS 342
            +S ++++ +IA+SG+RAA     A A NIAN  + G+         TA G VV             Q   A     DL  +    ++ + D++A  ++LRAAD+  G LLD+L+
Sbjct:    1 MSSIASVPSIALSGMRAAASGLQARANNIANAATEGFQRQVTANQETAGGGVVA------------QVTAAGGEGSDLVDDMVGGLSARNDFQANARVLRAADDTVGSLLDVLA 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8563.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A3C0TXY5_9PROT1.460e-2554.55Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2N6EUW1_9DELT5.520e-834.55Flagellar biosynthesis protein FlgC n=1 Tax=Desulf... [more]
A0A514EE08_XANCT2.660e-631.58Flg_bb_rod domain-containing protein n=1 Tax=Xanth... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8563contigP-wetherbeei_contig8563:855..1199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1268622.AVS7_02109
PFAMsFlg_bb_rod,Flg_bbr_C
Model size345
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.6e-09
EggNOG OGsCOG1256@1|root,COG1256@2|Bacteria,1NMP9@1224|Proteobacteria,2VVX1@28216|Betaproteobacteria,4AFNB@80864|Comamonadaceae
DescriptionFlagellar basal body rod protein
Cds size336
COG categoryN
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.3751454-UTR-P-wetherbeei_contig8563:854..8631683187047.3751454-UTR-P-wetherbeei_contig8563:854..863Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8563 855..863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.3883781-CDS-P-wetherbeei_contig8563:863..11991683187047.3883781-CDS-P-wetherbeei_contig8563:863..1199Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8563 864..1199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8563.2.1prot_P-wetherbeei_contig8563.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8563 864..1199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8563.2.1

>prot_P-wetherbeei_contig8563.2.1 ID=prot_P-wetherbeei_contig8563.2.1|Name=mRNA_P-wetherbeei_contig8563.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MSNITNIAVSGIRAAGVRFAAHAENIANTNSTGYTALRPEQISTAAGPVV
RVTRPDKARPNAQQSENAAPSDVDLASEFAHLIALKYDYKAAVKLLRAAD
EVSGKLLDILS*
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mRNA from alignment at P-wetherbeei_contig8563:855..1199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8563.2.1 ID=mRNA_P-wetherbeei_contig8563.2.1|Name=mRNA_P-wetherbeei_contig8563.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig8563:855..1199+ (Phaeothamnion wetherbeei SAG_119_79)
CTTTCCCTTATGAGCAATATTACAAATATCGCCGTTTCAGGCATTCGGGC
AGCCGGTGTGCGCTTCGCGGCCCATGCCGAAAATATCGCCAATACCAACA
GCACGGGCTATACCGCATTGCGGCCCGAGCAGATTTCTACGGCAGCCGGG
CCGGTTGTGCGCGTGACGCGGCCGGACAAAGCCCGCCCCAATGCGCAGCA
GAGCGAAAACGCTGCGCCGTCAGATGTTGATCTGGCCAGCGAATTTGCGC
ACCTTATTGCCCTCAAATATGACTATAAAGCGGCGGTAAAGCTGCTGCGC
GCAGCGGACGAGGTAAGCGGTAAGCTGCTCGATATTCTGAGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8563:855..1199+

>mRNA_P-wetherbeei_contig8563.2.1 ID=mRNA_P-wetherbeei_contig8563.2.1|Name=mRNA_P-wetherbeei_contig8563.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig8563:855..1199+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAATATTACAAATATCGCCGTTTCAGGCATTCGGGCAGCCGGTGT
GCGCTTCGCGGCCCATGCCGAAAATATCGCCAATACCAACAGCACGGGCT
ATACCGCATTGCGGCCCGAGCAGATTTCTACGGCAGCCGGGCCGGTTGTG
CGCGTGACGCGGCCGGACAAAGCCCGCCCCAATGCGCAGCAGAGCGAAAA
CGCTGCGCCGTCAGATGTTGATCTGGCCAGCGAATTTGCGCACCTTATTG
CCCTCAAATATGACTATAAAGCGGCGGTAAAGCTGCTGCGCGCAGCGGAC
GAGGTAAGCGGTAAGCTGCTCGATATTCTGAGCTGA
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