mRNA_P-wetherbeei_contig856.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig856.4.1
Unique NamemRNA_P-wetherbeei_contig856.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig856.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig856contigP-wetherbeei_contig856:7207..8131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size433
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.0363622-CDS-P-wetherbeei_contig856:7206..72631683187047.0363622-CDS-P-wetherbeei_contig856:7206..7263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig856 7207..7263 +
1683187047.048125-CDS-P-wetherbeei_contig856:7755..81301683187047.048125-CDS-P-wetherbeei_contig856:7755..8130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig856 7756..8130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig856.4.1prot_P-wetherbeei_contig856.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig856 7207..8130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig856.4.1

>prot_P-wetherbeei_contig856.4.1 ID=prot_P-wetherbeei_contig856.4.1|Name=mRNA_P-wetherbeei_contig856.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
AVDNNGYSDDKMRTAAAAAGGTIEDSPLLPMPLVRRMVAVVRAGAVKPHL
SEDLPVDSGGSFSAGGSSPVEGLKRQRSFAGSSGSSGGGSFGGSGGSPAS
RRSVLTRAESSSSNNVVRQWRGSLSRGESSQPRSLTSVAAAEAA
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mRNA from alignment at P-wetherbeei_contig856:7207..8131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig856.4.1 ID=mRNA_P-wetherbeei_contig856.4.1|Name=mRNA_P-wetherbeei_contig856.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=925bp|location=Sequence derived from alignment at P-wetherbeei_contig856:7207..8131+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGTGGATAATAATGGTTACAGCGACGATAAAATGCGAACGGCAGCGGC
GGCCGCCGCCGCCACCGCCTTGGCCGCCGTCGCCGTCCCTGTGGGAGCCA
CCAGTGTCTGTGGCAGCCCTCGGCGGCTGGCCAACATCACCGCAATGGCG
TTCCGCCCCGCTTTCCCCGCCGCCGTCACGGGAGGCACCGCAGCCGCCGC
CGCCGACGCCACCACCCTGCCGATGCTCGCCACAGCGGACGAGGCGGGCG
TGCTGCGCTTCTGGGACCTCCGACCAGCCGTACGCGCCGCCGGCCCGCGC
TGCATTCCCATCGACGTTCCGGCGGCGCGCGGCCCGGCGTACAATCCGCG
CATCTGCCAGACGCGCGACGGCCCGCTTGACGGGGCGCCGCCGCGGCTGC
AGCCGTGGCTCAAGGCCATGGTGGCGGCGGCGGCAGCGCTGCGGGCGACG
GGCAAGCTGCCGCCGCCGCCGCAGGCCCCGTTGGACTTGGCGGCGGTGGC
AGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGCGGCGGAGG
GAGGCACGATAGAGGACAGCCCGCTACTGCCGATGCCCTTGGTGCGTCGC
ATGGTGGCGGTGGTGCGGGCCGGGGCGGTCAAGCCGCATCTTTCTGAGGA
CCTTCCTGTAGATTCTGGTGGTAGCTTCTCCGCAGGAGGCTCATCTCCTG
TCGAAGGACTGAAACGGCAGCGTAGCTTTGCCGGCAGCAGCGGCAGCAGC
GGCGGCGGCAGCTTCGGTGGCAGCGGCGGCAGCCCGGCCTCCCGCCGCAG
CGTGCTGACGCGAGCGGAGAGCAGCAGCAGCAACAACGTGGTGCGGCAAT
GGCGGGGGAGTCTGTCGCGCGGGGAGAGCTCTCAACCGCGCTCCTTAACC
TCCGTTGCTGCCGCCGAAGCGGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig856:7207..8131+

>mRNA_P-wetherbeei_contig856.4.1 ID=mRNA_P-wetherbeei_contig856.4.1|Name=mRNA_P-wetherbeei_contig856.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig856:7207..8131+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGTGGATAATAATGGTTACAGCGACGATAAAATGCGAACGGCAGCGGC
GGCCGCCGGAGGCACGATAGAGGACAGCCCGCTACTGCCGATGCCCTTGG
TGCGTCGCATGGTGGCGGTGGTGCGGGCCGGGGCGGTCAAGCCGCATCTT
TCTGAGGACCTTCCTGTAGATTCTGGTGGTAGCTTCTCCGCAGGAGGCTC
ATCTCCTGTCGAAGGACTGAAACGGCAGCGTAGCTTTGCCGGCAGCAGCG
GCAGCAGCGGCGGCGGCAGCTTCGGTGGCAGCGGCGGCAGCCCGGCCTCC
CGCCGCAGCGTGCTGACGCGAGCGGAGAGCAGCAGCAGCAACAACGTGGT
GCGGCAATGGCGGGGGAGTCTGTCGCGCGGGGAGAGCTCTCAACCGCGCT
CCTTAACCTCCGTTGCTGCCGCCGAAGCGGCA
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