mRNA_P-wetherbeei_contig856.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig856.3.1
Unique NamemRNA_P-wetherbeei_contig856.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: D7G8J6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 8.060e-18
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  406 CLPVLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            C   LR+V  AH+ DIT +  S RLGL+AT+S DLTVR+WDY  L L  V V HR E T + F +PLP LA AD +G VL+W   P
Sbjct:  545 CAFTLRSVVDAHEGDITLMGASARLGLIATASSDLTVRLWDYGLLRLEEVIVAHRQEITCVRFLDPLPCLATADMTGKVLIWATRP 630          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A835YN47_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN47_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.530e-17
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR +  AHD DI+ LA S  L L+AT++ DLT+R+WDY+ L L +VCVGHRH+   L F  PLP +A+A+  G V++W   P
Sbjct:  532 LLRRMHPAHDGDISQLAFSADLQLIATAASDLTIRLWDYSLLALDAVCVGHRHDVAALRFLHPLPAIASAEARGRVMIWATRP 614          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A7S1CJ41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ41_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.600e-14
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  412 PVLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGM 657
            P LR V  AH ADI   A S  L L+ T+  D T+RVWD+ +L L  +C+GHR E T   F EP P+L  AD SG +  W +
Sbjct:  418 PRLRHVEEAHSADIVLTAFSYNLSLIVTAGSDFTLRVWDFQSLKLDGMCIGHRTEVTAAQFLEPFPVLVTADSSGSICFWAV 499          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A3R6YJR3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YJR3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.970e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT++A S  L L+AT S D TV++WDY    L + CVGH      + F +P PLLA+ D  G + +W M P
Sbjct:   52 LLRRMTGGHTGDITSVAFSYNLSLIATGSLDCTVQIWDYEFGRLDATCVGHTSGVAGIVFLDPYPLLASCDLGGNIAIWAMRP 134          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A3R7C0Q6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7C0Q6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.610e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT++A S  L L+AT S D TV++WDY    L + CVGH      + F +P PLLA+ D  G + +W M P
Sbjct:  273 LLRRMTGGHTGDITSVAFSYNLSLIATGSLDCTVQIWDYEFGRLDATCVGHTSGVAGIVFLDPYPLLASCDLGGNIAIWAMRP 355          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A418BBE4_9STRA (EF-hand domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BBE4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.680e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT++A S  L L+AT S D TV++WDY    L + CVGH      + F +P PLLA+ D  G + +W M P
Sbjct:  548 LLRRMTGGHTGDITSVAFSYNLSLIATGSLDCTVQIWDYEFGRLDATCVGHTSGVAGIVFLDPYPLLASCDLGGNIAIWAMRP 630          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A397DE51_9STRA (EF-hand domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE51_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.950e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT++A S  L L+AT S D TV++WDY    L + CVGH      + F +P PLLA+ D  G + +W M P
Sbjct:  835 LLRRMTGGHTGDITSVAFSYNLSLIATGSLDCTVQIWDYEFGRLDATCVGHTSGVAGIVFLDPYPLLASCDLGGNIAIWAMRP 917          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: W4GFI7_9STRA (EF-hand domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFI7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.010e-12
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT++A S  L L+AT S D TV++WDY    L + CVGH      + F +P PLLA+ D  G + +W M P
Sbjct:  618 LLRRMTGGHTGDITSVAFSYNLSLIATGSLDCTVQIWDYEFGRLDATCVGHTSGVAGIVFLDPYPLLASCDLGGNIAIWAMRP 700          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A485LEF4_9STRA (Aste57867_19412 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEF4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.680e-11
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYA---TLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT+LA S  L L+AT S D T+++WDY    ++ L   CVGH      + F +P PLLA+ D  G V +W M P
Sbjct:  632 LLRRMTGGHTGDITSLAFSHNLSLIATGSLDCTIQIWDYEFGRSVKLDGTCVGHTTGVACVTFLDPYPLLASCDLGGNVCLWAMRP 717          
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Match: A0A067CXM8_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CXM8_SAPPC)

HSP 1 Score: 73.6 bits (179), Expect = 1.690e-11
Identity = 37/83 (44.58%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  415 VLRAVRGAHDADITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCEPLPLLAAADGSGLVLVWGMPP 663
            +LR + G H  DIT+LA S  L L+AT S D  V++WDY    L   C+GH    + L F +P PLLA  D  G V +W M P
Sbjct:  641 LLRKMTGGHTGDITSLAYSHTLSLIATGSLDCMVQIWDYEFGRLDGTCIGHTSGISSLLFLDPYPLLAVCDLHGNVCLWAMRP 723          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig856.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7G8J6_ECTSI8.060e-1853.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YN47_9STRA2.530e-1749.40WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A7S1CJ41_9STRA6.600e-1446.34Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A3R6YJR3_9STRA3.970e-1243.37Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3R7C0Q6_9STRA4.610e-1243.37Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A418BBE4_9STRA4.680e-1243.37EF-hand domain-containing protein n=2 Tax=Aphanomy... [more]
A0A397DE51_9STRA4.950e-1243.37EF-hand domain-containing protein (Fragment) n=5 T... [more]
W4GFI7_9STRA5.010e-1243.37EF-hand domain-containing protein n=3 Tax=Aphanomy... [more]
A0A485LEF4_9STRA1.680e-1143.02Aste57867_19412 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CXM8_SAPPC1.690e-1144.58EF-hand domain-containing protein n=2 Tax=Saproleg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig856contigP-wetherbeei_contig856:6376..7038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8J6
PFAMsAnk_2,NACHT,Utp13,WD40
Model size665
Max annot lvl2759|Eukaryota
KEGG koko:K14555
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-18
EggNOG OGsKOG0319@1|root,KOG0319@2759|Eukaryota
DescriptionTransducin beta-like protein 3
Cds size663
COG categoryT
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.086251-CDS-P-wetherbeei_contig856:6375..70381683187047.086251-CDS-P-wetherbeei_contig856:6375..7038Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig856 6376..7038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig856.3.1prot_P-wetherbeei_contig856.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig856 6376..7038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig856.3.1

>prot_P-wetherbeei_contig856.3.1 ID=prot_P-wetherbeei_contig856.3.1|Name=mRNA_P-wetherbeei_contig856.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=221bp
GGSAVTAVALVDGDNTLVTVGTDRILRVLDVRTGGRGVVVSGSNGFGGWH
GSGSSDSLSPPGSKSPPRLGARTLAAAGASGGFAESEFRPGTASASFRLG
TAAARSRPGTAGRSRPGTAAAAAAAAAAATAMPEPCLPVLRAVRGAHDAD
ITALAVSRRLGLVATSSPDLTVRVWDYATLTLASVCVGHRHEPTVLCFCE
PLPLLAAADGSGLVLVWGMPP
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mRNA from alignment at P-wetherbeei_contig856:6376..7038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig856.3.1 ID=mRNA_P-wetherbeei_contig856.3.1|Name=mRNA_P-wetherbeei_contig856.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=663bp|location=Sequence derived from alignment at P-wetherbeei_contig856:6376..7038+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCAGCGCCGTCACCGCCGTGGCACTCGTTGACGGCGACAACACACT CGTCACCGTGGGCACCGACCGCATCCTGCGGGTTCTCGACGTCCGCACCG GCGGCCGTGGTGTCGTTGTCAGCGGCAGCAACGGCTTTGGCGGCTGGCAC GGCAGTGGCAGCTCAGACTCTCTGTCCCCGCCGGGGTCAAAATCGCCGCC ACGCCTCGGAGCACGGACGCTAGCAGCAGCAGGCGCGAGCGGTGGCTTCG CGGAATCAGAATTTAGGCCCGGCACGGCATCTGCCAGCTTCCGGCTAGGG ACAGCAGCGGCGAGGTCCCGTCCGGGGACAGCGGGACGTTCCCGTCCGGG CACTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCAATGCCGG AGCCGTGCCTACCGGTGCTGCGTGCGGTGCGCGGCGCCCACGATGCGGAC ATTACGGCGCTTGCTGTCTCGCGGCGGCTCGGTCTCGTCGCCACTTCGTC TCCGGATTTGACCGTTCGCGTCTGGGACTACGCGACGCTGACGCTGGCGT CCGTGTGCGTCGGCCACCGCCACGAGCCGACGGTGCTCTGCTTCTGCGAG CCGCTGCCGCTGCTGGCAGCGGCGGACGGCTCTGGATTAGTGCTGGTGTG GGGAATGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig856:6376..7038+

>mRNA_P-wetherbeei_contig856.3.1 ID=mRNA_P-wetherbeei_contig856.3.1|Name=mRNA_P-wetherbeei_contig856.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=663bp|location=Sequence derived from alignment at P-wetherbeei_contig856:6376..7038+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCAGCGCCGTCACCGCCGTGGCACTCGTTGACGGCGACAACACACT
CGTCACCGTGGGCACCGACCGCATCCTGCGGGTTCTCGACGTCCGCACCG
GCGGCCGTGGTGTCGTTGTCAGCGGCAGCAACGGCTTTGGCGGCTGGCAC
GGCAGTGGCAGCTCAGACTCTCTGTCCCCGCCGGGGTCAAAATCGCCGCC
ACGCCTCGGAGCACGGACGCTAGCAGCAGCAGGCGCGAGCGGTGGCTTCG
CGGAATCAGAATTTAGGCCCGGCACGGCATCTGCCAGCTTCCGGCTAGGG
ACAGCAGCGGCGAGGTCCCGTCCGGGGACAGCGGGACGTTCCCGTCCGGG
CACTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGACGGCAATGCCGG
AGCCGTGCCTACCGGTGCTGCGTGCGGTGCGCGGCGCCCACGATGCGGAC
ATTACGGCGCTTGCTGTCTCGCGGCGGCTCGGTCTCGTCGCCACTTCGTC
TCCGGATTTGACCGTTCGCGTCTGGGACTACGCGACGCTGACGCTGGCGT
CCGTGTGCGTCGGCCACCGCCACGAGCCGACGGTGCTCTGCTTCTGCGAG
CCGCTGCCGCTGCTGGCAGCGGCGGACGGCTCTGGATTAGTGCTGGTGTG
GGGAATGCCGCCG
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