mRNA_P-wetherbeei_contig856.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig856.1.1
Unique NamemRNA_P-wetherbeei_contig856.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig856.1.1 vs. uniprot
Match: A0A6H5LA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA60_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.210e-42
Identity = 105/250 (42.00%), Postives = 150/250 (60.00%), Query Frame = 2 
Query:   17 RPSLFLSSQMSVAVARGGPSYPAEWARTSQVVSKHAGTVLEDLSVLNQLAELTDEQEAIARAVFSDADPQGRGLIDAAALRPALERLDLRLDDSMFQSLVSERCAGLLRS---------GG--LDMPTFVAVYRTVFAPARTFGAHLRRAAGRGDNAIVRELLLRGCDPHAADGLGTTALHAVASFGRLETGRLLKELSPPSRPLPVRARDYSGLRPLAAAAAAGHAAVVRWLLDEGAEADGRTDAGRTA 733
            RPS   +++  + V+R   SY  E     +++SKH+GTVLED  +  +  EL+D+Q   ARA F  A+ +G   +   A++ AL  L+LRLDD++FQ LV +R      S         GG  +D+  F  VY +V APA TFG HLR+AAGRGD  +VREL+LRGC+P+   G G TALH +A+FGR++  + L+ L    + L ++ RD +G  PL  A+  GH A +R LLDEG +     ++GRTA
Sbjct:    3 RPSSRNAARPRIPVSR---SY--ERPEPKRIISKHSGTVLEDGLLACEKVELSDDQYEAARAAFR-AEAEGAPRLGPQAVKRALLSLNLRLDDALFQRLVEDRWHSYTDSDDADHGPGGGGDSVDVDGFALVYGSVAAPAITFGRHLRKAAGRGDKELVRELILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRALC--GKDLIMQPRDKAGWTPLMVASGNGHTAFMRLLLDEGVDPGIANNSGRTA 244
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BLAST of mRNA_P-wetherbeei_contig856.1.1 vs. uniprot
Match: A0A835ZCP7_9STRA (Ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCP7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.170e-30
Identity = 85/199 (42.71%), Postives = 110/199 (55.28%), Query Frame = 2 
Query:  164 AELTDEQEAIARAVFSDADPQGRGLIDAAALRPALERLDLRLDDSMFQSLVSERCAGLLRSGGLDMPTFVAVYRTVFAPARTFGAHLRRAAGRGDNAIVRELLLRGCDPHAADGLGTTALHAVASFGRLETGRLLKELSPPSRPLPVRARDYSGLRPLAA-------------------AAAAGHAAVVRWLLDEGAEA 703
            AELT++Q   ARA F+ AD    G I  AA R AL RL L+LDD++F+ L   R A   R   +    FVA++    AP+R +GA LR+AAGRGD A+VRELL+RGC  + ADG G  AL   A+ G ++  +LLK+ +     L V   D +G  PL                     A+A GHA  VRWLLD GA+A
Sbjct:   25 AELTEDQLNDARAAFAGADAAAAGRISQAAARAALARLGLQLDDALFERLARARWAEYGRDD-VSCEGFVALFALAAAPSRKYGAQLRKAAGRGDVAVVRELLMRGCGVNTADGNGMPALQHAAAAGLVDVAKLLKQCA--GAELEVNTADNTGWTPLMTXXXXXXXXXXXXXXXXXXXASAHGHAVFVRWLLDAGADA 220
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BLAST of mRNA_P-wetherbeei_contig856.1.1 vs. uniprot
Match: D7FQJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 8.360e-30
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 2 
Query:   17 RPSLFLSSQMSVAVARGGPSYPAEWARTSQVVSKHAGTVLEDLSVLNQLAELTDEQEAIARAVFSDADPQGRGLIDAAALRPALERLDLRLDDSMFQSLVSERCAGLLRS---------GG--LDMPTFVAVYRTVFAPARTFGAHLRRAAGRGDNAIVRELLLRGCDPHAADGLGTTALHAVASFGRLETGRLLKEL 577
            RPS   +++    V+R   SY  E     +++SKH GTVLED     + AEL+D+Q   ARA F  A+  G   +   A++ AL    LRLDD++FQ LV +R      S         GG  +D+  F  VY +V APA TFG HLR+AAGRGD  +VR+L+LRGC+P+   G G TALH +A+FGR++  + L+ L
Sbjct:    3 RPSSRNAARPKTPVSR---SY--ERPEPKRIISKHLGTVLEDGLPACE-AELSDDQYEAARAAFR-AEAGGASRLGPQAVKRAL----LRLDDALFQRLVEDRWHSYTDSDDADHGPGGGGNSVDVDGFARVYGSVAAPAITFGRHLRKAAGRGDEELVRQLILRGCNPNTGSGTGETALHTMAAFGRVDCAKALRAL 189
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BLAST of mRNA_P-wetherbeei_contig856.1.1 vs. uniprot
Match: A0A6V1LZF5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LZF5_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 7.020e-17
Identity = 69/224 (30.80%), Postives = 103/224 (45.98%), Query Frame = 2 
Query:   89 WARTSQVVSKHAGTVLEDLSVLNQLAELTDEQEAIARAVFSDADPQGRGLIDAAALRPALERLDLRLDDSMFQSLVSE--RCAGLLRSGGLDMPTFVAVYRTVFAPARTFGAHLRRAAGRGDNAIVRELLLRGCDPHAADGLGTTALHAVASFGRLET-------------GRLLKELSPPSRPLPVRARDYSGLRPLAAAAAAGHAAVVRWLLDEGAEADGRT 715
            W   + V+SKH GTVL D       AEL+DE+   A  +F + D      +D+  +   LE+L+LRLD+ ++++ V                          V APA  +G  LR AAGRG+  +    L RGC  +  +G G T LH     G+L               G+  K+ +  +  L V  +D S   PL  AAA G+ A++R L+D GA+ + +T
Sbjct:   16 WKNVTTVISKHQGTVLADDE---PRAELSDEERQKALKMFDEFDSDDNERLDSEEILKLLEKLNLRLDNELYETYVKGIWXXXXXXXXXXXXXXXXXXXXXRVLAPAYQYGERLRVAAGRGEVGLALGYLRRGCPAYTGNGEGQTPLHIAVEMGQLAMVQALFEYVDDAGGGKKDKQKNSRAAYLDVDCQDKSLWTPLHNAAAGGNTAIMRALIDRGADVNAKT 236
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BLAST of mRNA_P-wetherbeei_contig856.1.1 vs. uniprot
Match: A0A8K1FL71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FL71_PYTOL)

HSP 1 Score: 79.3 bits (194), Expect = 4.720e-12
Identity = 43/139 (30.94%), Postives = 69/139 (49.64%), Query Frame = 2 
Query:  158 QLAELTDEQEAIARAVFSDADPQGRGLIDAAALRPALERLDLRLDDSMFQSLV--------SERCAGLLRSGGLDMPTFVAVYRTVFAPARTFGAHLRRAAGRGDNAIVRELLLRGCDPHAADGLGTTALHAVASFGRL 550
            +++EL +    IA+  F +   +    +    L    +R  + L   +F S+V        +E   G+     +    F+ ++ TV+APA  FG  LR A GR +   ++EL+ RGCDPHA DG G TA+H  A +G +
Sbjct:  310 RISELRESDFEIAKLAFQEVTTEDASFVTVDKLPDLFKRTGIVLPTELFGSVVVANLPVQATEEGDGVQSVAAVSHDAFLNLFSTVYAPAYKFGQELRLACGRNEVGKIQELIARGCDPHAKDGSGWTAMHYAAEYGHV 448
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig856.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5LA60_9PHAE1.210e-4242.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCP7_9STRA2.170e-3042.71Ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
D7FQJ8_ECTSI8.360e-3042.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1LZF5_HETAK7.020e-1730.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FL71_PYTOL4.720e-1230.94Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig856contigP-wetherbeei_contig856:583..2623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000020141
PFAMsAnk_2,Ank_4
Model size1434
Max annot lvl2759|Eukaryota
KEGG koko:K06694
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.47e-17
EggNOG OGsCOG0666@1|root,KOG4412@2759|Eukaryota
Descriptionproteasome regulatory particle assembly
Cds size981
COG categoryL
BRITEko00000,ko03051
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig856.1.1prot_P-wetherbeei_contig856.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig856 1178..2580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.1194339-UTR-P-wetherbeei_contig856:582..9711683187047.1194339-UTR-P-wetherbeei_contig856:582..971Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig856 583..971 -
1683187047.133746-UTR-P-wetherbeei_contig856:1156..11771683187047.133746-UTR-P-wetherbeei_contig856:1156..1177Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig856 1157..1177 -
1683187047.1779096-UTR-P-wetherbeei_contig856:2580..26231683187047.1779096-UTR-P-wetherbeei_contig856:2580..2623Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig856 2581..2623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187047.1438694-CDS-P-wetherbeei_contig856:1177..17431683187047.1438694-CDS-P-wetherbeei_contig856:1177..1743Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig856 1178..1743 -
1683187047.1543694-CDS-P-wetherbeei_contig856:2067..23071683187047.1543694-CDS-P-wetherbeei_contig856:2067..2307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig856 2068..2307 -
1683187047.1650314-CDS-P-wetherbeei_contig856:2405..25801683187047.1650314-CDS-P-wetherbeei_contig856:2405..2580Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig856 2406..2580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig856.1.1

>prot_P-wetherbeei_contig856.1.1 ID=prot_P-wetherbeei_contig856.1.1|Name=mRNA_P-wetherbeei_contig856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
MSVAVARGGPSYPAEWARTSQVVSKHAGTVLEDLSVLNQLAELTDEQEAI
ARAVFSDADPQGRGLIDAAALRPALERLDLRLDDSMFQSLVSERCAGLLR
SGGLDMPTFVAVYRTVFAPARTFGAHLRRAAGRGDNAIVRELLLRGCDPH
AADGLGTTALHAVASFGRLETGRLLKELSPPSRPLPVRARDYSGLRPLAA
AAAAGHAAVVRWLLDEGAEADGRTDAGRTALHAAAGKGRDGCVRALLGGG
ADASARDDAGWTPLHCASAHGHAGVMRLLMVDGGADAAARDAVGRTPQSY
CDERLWQRVREDSLAAVRTSGGGRIA*
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mRNA from alignment at P-wetherbeei_contig856:583..2623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig856.1.1 ID=mRNA_P-wetherbeei_contig856.1.1|Name=mRNA_P-wetherbeei_contig856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2041bp|location=Sequence derived from alignment at P-wetherbeei_contig856:583..2623- (Phaeothamnion wetherbeei SAG_119_79)
CGTGAATAAAGAAAAGCGGCCATCCCTCTTCCTTTCATCGCAAATGTCTG
TGGCGGTGGCTCGAGGAGGGCCGTCGTATCCGGCGGAATGGGCCCGAACG
AGCCAGGTCGTCTCCAAGCACGCGGGCACGGTTCTCGAGGATTTGTCTGT
CCTTAACCAGCTTGCAGAGCTAACCGACGAGCAAGAGGCGATTGCAAGAG
CAGTATTTAGTGACGCCGGTGTGTTTTACTTGAGATACCCCACGCCTTCA
AAGCAAACTTTTGTTTTCCTCGGCTCAAGCCACTCCACCAACCTACCAAC
TTTCCTTTGTGCGCAGACCCGCAAGGTCGCGGCCTGATCGACGCCGCCGC
GCTCCGGCCGGCGCTGGAGCGCCTGGACCTCCGTCTCGACGACTCCATGT
TCCAGTCCCTCGTTTCGGAACGCTGCGCAGGCCTCCTCCGCAGCGGCGGC
CTCGACATGCCCACCTTCGTGGCGGTCTACCGGACGGTTTTTGCGCCGGC
TCGCACCTTCGGGGCGCACCTGCGACGGGCGGCGGGCCGGGGAGACAACG
CCATCGGTAAGGCATCCGTGGTTCGGAGGGGCTTGTGAAAAGGGAGAGGA
ATATCATCGCTGCAGACTTTGATTACAAACATTGTTCGGGAATTTGTGTC
GGCTGCTGTCAATGTGATTCCACGAGTGCCCTTTTCGGTTGGGCATCATG
GCTTTGAAGCGTATTCCCTGTAATCCCATGCGAATTGCAGCCGGTCATCT
GGTCCCGCAAACGCTGCATTTCCCTACTCCCATCTCCAGACATTTACCTC
TACAAATCTTGCGTGTGCGTTATCTGACCGTTAGTCGGTTGCCTATCGCT
CCTGCTCCGCTGCTCTCACACCCACTGCAGTACGCGAGCTGCTGCTGCGT
GGCTGCGACCCGCACGCCGCCGATGGCCTCGGCACGACGGCACTGCACGC
CGTCGCCTCCTTCGGGCGCCTCGAGACCGGCCGCCTTCTGAAGGAGCTCT
CGCCGCCATCGCGGCCCCTGCCCGTCCGGGCCCGCGACTACAGCGGCTTG
AGGCCGCTGGCGGCGGCGGCGGCCGCCGGCCACGCGGCGGTTGTCCGCTG
GCTGCTGGACGAGGGCGCGGAGGCGGACGGCAGGACGGACGCTGGCCGAA
CGGCGCTGCACGCGGCGGCCGGCAAGGGCCGCGACGGCTGCGTTCGCGCG
CTGCTTGGCGGCGGCGCGGATGCATCGGCGCGGGACGACGCCGGCTGGAC
GCCGCTGCACTGCGCCTCGGCGCACGGGCACGCCGGGGTGATGCGGCTGC
TGATGGTCGACGGCGGCGCCGACGCCGCAGCACGCGACGCTGTGGGGCGC
ACACCACAGTCGTACTGCGACGAGCGGCTGTGGCAGCGCGTGCGCGAGGA
CAGCCTGGCAGCCGTGCGGACGAGCGGCGGCGGCCGGATCGCTTAGCAAC
ATAAATTATCAGAGAAGGTACGGGAAAACAGGGTGTACCTTCCATTGTCG
ATGAGTGTTTGCGGGTTGTACGTGTTCGCTCTGCATTCATGGGTCCGGGT
AGTTGTATGTTTCGCAAGTACGGGACGTGTGATCATTCTCTAACTGCGTG
GGAGAGTTGTCCCATTTGGAAATGTGTCTGGCTCACTGTTTTTTATGTCC
AGATTCTGCGGTGAGGAAAAGCACAAGAGCGCAAGGGTTTGGCGACTGTG
GGTGCAAGCGCCTTGAGGCTCAGCAACGCGGGAGCCGAGTGATGGGCAGC
GGTTTTTGCGGTCGGAGGCGCCGGTTAAAGCAATTGGACGGCATGACACA
GGAAAGCGGGTTCTGGCACCCAGCTCCCGGTTCAGGCAGTCTTCTCGTCG
CGCCTTGGGCGCAGTCGGCCGATGCGCCCCACTGGCAGCAGAAGAGGGCC
GCGAAGCCTCGAGCAAGACGCATTGCCGGCGAGCAAGACGGAAGAGAGTA
ATCTGTTTCGTAGTCGCTGCCGGCCCTCTCGGGAGAGCCTCGTCGCATGA
ATTTACGCCTGCTCTTGATCGGGTTGACCTGGCACCATGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig856:583..2623-

>mRNA_P-wetherbeei_contig856.1.1 ID=mRNA_P-wetherbeei_contig856.1.1|Name=mRNA_P-wetherbeei_contig856.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig856:583..2623- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGTGGCGGTGGCTCGAGGAGGGCCGTCGTATCCGGCGGAATGGGC
CCGAACGAGCCAGGTCGTCTCCAAGCACGCGGGCACGGTTCTCGAGGATT
TGTCTGTCCTTAACCAGCTTGCAGAGCTAACCGACGAGCAAGAGGCGATT
GCAAGAGCAGTATTTAGTGACGCCGACCCGCAAGGTCGCGGCCTGATCGA
CGCCGCCGCGCTCCGGCCGGCGCTGGAGCGCCTGGACCTCCGTCTCGACG
ACTCCATGTTCCAGTCCCTCGTTTCGGAACGCTGCGCAGGCCTCCTCCGC
AGCGGCGGCCTCGACATGCCCACCTTCGTGGCGGTCTACCGGACGGTTTT
TGCGCCGGCTCGCACCTTCGGGGCGCACCTGCGACGGGCGGCGGGCCGGG
GAGACAACGCCATCGTACGCGAGCTGCTGCTGCGTGGCTGCGACCCGCAC
GCCGCCGATGGCCTCGGCACGACGGCACTGCACGCCGTCGCCTCCTTCGG
GCGCCTCGAGACCGGCCGCCTTCTGAAGGAGCTCTCGCCGCCATCGCGGC
CCCTGCCCGTCCGGGCCCGCGACTACAGCGGCTTGAGGCCGCTGGCGGCG
GCGGCGGCCGCCGGCCACGCGGCGGTTGTCCGCTGGCTGCTGGACGAGGG
CGCGGAGGCGGACGGCAGGACGGACGCTGGCCGAACGGCGCTGCACGCGG
CGGCCGGCAAGGGCCGCGACGGCTGCGTTCGCGCGCTGCTTGGCGGCGGC
GCGGATGCATCGGCGCGGGACGACGCCGGCTGGACGCCGCTGCACTGCGC
CTCGGCGCACGGGCACGCCGGGGTGATGCGGCTGCTGATGGTCGACGGCG
GCGCCGACGCCGCAGCACGCGACGCTGTGGGGCGCACACCACAGTCGTAC
TGCGACGAGCGGCTGTGGCAGCGCGTGCGCGAGGACAGCCTGGCAGCCGT
GCGGACGAGCGGCGGCGGCCGGATCGCTTAG
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