mRNA_P-wetherbeei_contig8546.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8546.1.1
Unique NamemRNA_P-wetherbeei_contig8546.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A1J5BYL0_9PROT (ORF6N domain-containing protein n=1 Tax=Betaproteobacteria bacterium CG2_30_59_46 TaxID=1805050 RepID=A0A1J5BYL0_9PROT)

HSP 1 Score: 220 bits (561), Expect = 1.430e-70
Identity = 114/171 (66.67%), Postives = 138/171 (80.70%), Query Frame = 1
Query:   22 LAATGGIARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGFV 534
            L A    A+RI+++RG K+M+DADLAELY VPTKRLNEQVKRN  RFP+DF+F+LT  E+ EVVANCDHL +LKFS +LPYAFTEHGALM  +VL + RAVEVSL +VR FVQ+RE L +HKELA +L+EL    ERK SSHDQAIAG++DAIR LM P  + +KRGIGF+
Sbjct:   12 LIAAESAAQRILLIRGQKVMLDADLAELYDVPTKRLNEQVKRNIERFPSDFMFQLTADEKTEVVANCDHLAKLKFSPSLPYAFTEHGALMLGNVLKSSRAVEVSLLIVRTFVQIREMLSSHKELAVKLEEL----ERKVSSHDQAIAGLIDAIRQLMTPP-AQKKRGIGFL 177          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A6L4YFL7_9RHOO (ORF6N domain-containing protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YFL7_9RHOO)

HSP 1 Score: 215 bits (547), Expect = 1.800e-68
Identity = 112/164 (68.29%), Postives = 135/164 (82.32%), Query Frame = 1
Query:   40 IARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGF 531
            +A RI++LRG ++M+DADLAELYGV TKRLNEQVKRNA+RFP DF+F+L   E+ EVVANCDHL RLKFS +LPYAFTEHGALM  +VL + RAVEVSL VVRAFVQ+RE L AHK+++ +LD++    ERK SSHDQAIAG++DAIR LM P   +R RGIGF
Sbjct:    9 VASRILLLRGQRVMLDADLAELYGVTTKRLNEQVKRNADRFPEDFMFQLNEEEKAEVVANCDHLGRLKFSPSLPYAFTEHGALMLGNVLKSSRAVEVSLLVVRAFVQIREMLSAHKDISAKLDQM----ERKLSSHDQAIAGLIDAIRQLMNPPAPAR-RGIGF 167          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A536Y004_9PROT (ORF6N domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y004_9PROT)

HSP 1 Score: 214 bits (545), Expect = 4.570e-68
Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = 1
Query:    1 HKKEDSVLAATGGIARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRA----LPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGFVQTD 543
            +KK  + L A   IA RIVVL G ++M DADLA LYGV T+RLNEQVKRN  RFP+DF+F+LT     EV            SR     LPYAFTEHGALMAA VLN+PRA EVS++VVRAFV+LR+TL AH+ELAKRL ELESR+ERK ++HDQAIAGILDAIR LMVP  S++KR IGFVQ D
Sbjct:    5 YKKNKTALIAIEAIASRIVVLHGQRVMRDADLAALYGVTTRRLNEQVKRNLERFPSDFMFQLTN---QEVAILRSQFATSNISRGGRRYLPYAFTEHGALMAAMVLNSPRATEVSVYVVRAFVELRDTLIAHEELAKRLGELESRLERKLATHDQAIAGILDAIRQLMVPPESTKKRRIGFVQND 186          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A1B4XG25_9GAMM (DNA-binding protein n=1 Tax=Sulfuricaulis limicola TaxID=1620215 RepID=A0A1B4XG25_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 1.110e-67
Identity = 108/164 (65.85%), Postives = 132/164 (80.49%), Query Frame = 1
Query:   40 IARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGF 531
            +AR I+++R HK+M+DADLAELYGV TKRLNEQVKRN  RFPADF+F+LT  E+ +VVANCDHL RLKFS  LP AFTEHGA+MAA+VLN+PRAVEVS+FVVRAFV+LRE    H+E+ ++LD+L    ERK + HDQAIA ++ AIR LM P    +KR IGF
Sbjct:   16 VARSILLIREHKVMLDADLAELYGVTTKRLNEQVKRNLERFPADFMFQLTEAEKTKVVANCDHLARLKFSPVLPTAFTEHGAIMAAAVLNSPRAVEVSVFVVRAFVKLRELSVIHREIGRKLDQL----ERKVTGHDQAIASLITAIRELMTPPNPKKKRSIGF 175          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A537A5Y6_9PROT (ORF6N domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537A5Y6_9PROT)

HSP 1 Score: 211 bits (538), Expect = 4.350e-67
Identity = 116/180 (64.44%), Postives = 138/180 (76.67%), Query Frame = 1
Query:   22 LAATGGIARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTE----RDEVVANCDHLKRLKFS--RALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGFVQTD 543
            + A   IA RIVVLRG ++M+DADLA LYGV TKRLNEQV RN  RFP+DF+F+LT  E    R +   +     RL +   R  P+AFTEHGALMAA VLN+PRA EVS++VVRAFV+LR+TL +HKELAKRLDELESR+ERKF++HDQAIA ILDAIR LMVP   ++KR IGFVQ D
Sbjct:    1 MIAIEAIASRIVVLRGQRVMLDADLAALYGVTTKRLNEQVMRNLGRFPSDFMFQLTNQEVAILRSQFATSRSDALRLAWGGRRYTPHAFTEHGALMAAMVLNSPRATEVSVYVVRAFVELRDTLVSHKELAKRLDELESRLERKFTTHDQAIASILDAIRQLMVPPEPTKKRRIGFVQDD 180          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A1G3H9C8_9RHOO (ORF6N domain-containing protein n=1 Tax=Rhodocyclales bacterium GWA2_65_20 TaxID=1802017 RepID=A0A1G3H9C8_9RHOO)

HSP 1 Score: 210 bits (535), Expect = 1.200e-66
Identity = 110/164 (67.07%), Postives = 130/164 (79.27%), Query Frame = 1
Query:   40 IARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGF 531
            +  RIV LRG ++M+D DLAELYGV TKRLNEQVKRN  RFP DF+F+L   E+ EVVANCDHL +LKFS +LPYAFTEHGALM  +VL + RAVEVSL VVRAFVQ+RE L  HK++A +LD++    ERK SSHDQAIAG++DAIR LM P  S+R RGIGF
Sbjct:    9 VINRIVQLRGQRVMLDTDLAELYGVTTKRLNEQVKRNIERFPEDFMFQLNAEEKAEVVANCDHLVQLKFSPSLPYAFTEHGALMLGNVLKSSRAVEVSLLVVRAFVQIREMLSTHKDIAAKLDQM----ERKLSSHDQAIAGLIDAIRQLMAPPPSTR-RGIGF 167          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A525CGC8_9GAMM (ORF6N domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A525CGC8_9GAMM)

HSP 1 Score: 209 bits (532), Expect = 4.050e-66
Identity = 106/168 (63.10%), Postives = 129/168 (76.79%), Query Frame = 1
Query:   40 IARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGFVQTD 543
            IA +I+V+RG K+M+  DLAELYGV TKRLNEQVKRN  RFP DF+F+L+  E+ EVVANCDHL  LKFS+ALPYAFTEHGA+ AA+VLN+ +A EVS++VVRAF++LRE L  +KEL  +  ELE RIERK   HDQ I GIL  I  LM+P   S+KR IGFV  +
Sbjct:   12 IASKIIVIRGQKVMIANDLAELYGVTTKRLNEQVKRNIERFPEDFVFQLSEKEKQEVVANCDHLNNLKFSKALPYAFTEHGAIQAANVLNSSQAAEVSVYVVRAFIRLRELLSTNKELLHKFKELELRIERKLEDHDQTITGILRTIHQLMIPE-DSKKRPIGFVHPE 178          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A6J4XIN1_9DELT (ORF6N domain-containing protein n=1 Tax=Olavius sp. associated proteobacterium Delta 1 TaxID=698986 RepID=A0A6J4XIN1_9DELT)

HSP 1 Score: 206 bits (525), Expect = 3.500e-65
Identity = 103/164 (62.80%), Postives = 134/164 (81.71%), Query Frame = 1
Query:   40 IARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGF 531
            I +RI+++RG K+MVDADLAE YGVPT+RLNEQV+RN +RFP DF+F+LT  E+ EVVANCDHL++LKFS+ALP  FTEHGA+MAASVLN+P+AVEVS+FVVRAFVQLRET+  HKELA+++    +++ERK   HD+ I  +++AI+ LM P    + R IGF
Sbjct:   13 IQQRILLIRGVKVMVDADLAEAYGVPTRRLNEQVRRNKDRFPDDFMFQLTTEEKAEVVANCDHLEKLKFSKALPLVFTEHGAIMAASVLNSPKAVEVSVFVVRAFVQLRETIAGHKELARKI----AKLERKLGDHDEQIMVLVEAIKQLMDPKPPPKTRRIGF 172          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A1G3HRP2_9RHOO (ORF6N domain-containing protein n=1 Tax=Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 TaxID=1802018 RepID=A0A1G3HRP2_9RHOO)

HSP 1 Score: 206 bits (524), Expect = 5.650e-65
Identity = 105/164 (64.02%), Postives = 133/164 (81.10%), Query Frame = 1
Query:   40 IARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGF 531
            +A RI++LR  ++M+DADLA+LYGV T+ LN+ VKRNA+RFP DF+F+L   E+ EVVANCDHL +LKFSR+LPYAFTEHGALM  +VL + RA+EVSL VVRAFVQ+RE L AHK+++ +LD++    ERK SSHDQAIAG++DAIR LM P   +R RGIGF
Sbjct:    9 VANRILLLRDQRVMLDADLADLYGVETRALNQAVKRNADRFPGDFMFQLNADEKAEVVANCDHLAKLKFSRSLPYAFTEHGALMLGNVLKSSRAIEVSLLVVRAFVQIREMLSAHKDISAKLDQM----ERKLSSHDQAIAGLIDAIRQLMNPPAPAR-RGIGF 167          
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Match: A0A8J6TJY6_9DELT (ORF6N domain-containing protein n=1 Tax=Candidatus Desulfatibia vada TaxID=2841696 RepID=A0A8J6TJY6_9DELT)

HSP 1 Score: 206 bits (524), Expect = 7.820e-65
Identity = 104/172 (60.47%), Postives = 133/172 (77.33%), Query Frame = 1
Query:   16 SVLAATGGIARRIVVLRGHKLMVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDHLKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLGAHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*SSRKRGIGF 531
            +++     + R I+++RG K+M+DADLA+LYGV TKRLNEQ++RN +RFP DF+FRLT  E+ EVVANCDHL +LKFS  LPYAFTEHGA+MAASVLNT RA++ S+FVVRAFV+LRE L  HKELA++L +L    ER+F  HD++I  I +AI+ LM P    RKR IGF
Sbjct:    5 NIIVPVEHVERTILMIRGQKVMIDADLAKLYGVATKRLNEQIRRNRDRFPNDFMFRLTAREKSEVVANCDHLSQLKFSTVLPYAFTEHGAIMAASVLNTRRAIDASIFVVRAFVKLREMLATHKELAQKLVDL----ERRFEDHDESIGAIFEAIQQLMAPPEKPRKR-IGF 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8546.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J5BYL0_9PROT1.430e-7066.67ORF6N domain-containing protein n=1 Tax=Betaproteo... [more]
A0A6L4YFL7_9RHOO1.800e-6868.29ORF6N domain-containing protein n=1 Tax=Rhodocycla... [more]
A0A536Y004_9PROT4.570e-6864.32ORF6N domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1B4XG25_9GAMM1.110e-6765.85DNA-binding protein n=1 Tax=Sulfuricaulis limicola... [more]
A0A537A5Y6_9PROT4.350e-6764.44ORF6N domain-containing protein n=2 Tax=Betaproteo... [more]
A0A1G3H9C8_9RHOO1.200e-6667.07ORF6N domain-containing protein n=1 Tax=Rhodocycla... [more]
A0A525CGC8_9GAMM4.050e-6663.10ORF6N domain-containing protein n=1 Tax=Gammaprote... [more]
A0A6J4XIN1_9DELT3.500e-6562.80ORF6N domain-containing protein n=1 Tax=Olavius sp... [more]
A0A1G3HRP2_9RHOO5.650e-6564.02ORF6N domain-containing protein n=1 Tax=Rhodocycla... [more]
A0A8J6TJY6_9DELT7.820e-6560.47ORF6N domain-containing protein n=1 Tax=Candidatus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8546contigP-wetherbeei_contig8546:2..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1232410.KI421428_gene1088
PFAMsORF6N
Model size543
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.18e-57
EggNOG OGsCOG0449@1|root,COG0449@2|Bacteria,1RGWX@1224|Proteobacteria,42TA9@68525|delta/epsilon subdivisions,2WPHJ@28221|Deltaproteobacteria
DescriptionORF6N domain
Cds size426
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187046.0638876-UTR-P-wetherbeei_contig8546:1..401683187046.0638876-UTR-P-wetherbeei_contig8546:1..40Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8546 2..40 -
1683187046.0832455-UTR-P-wetherbeei_contig8546:466..5441683187046.0832455-UTR-P-wetherbeei_contig8546:466..544Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8546 467..544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187046.0740414-CDS-P-wetherbeei_contig8546:40..4661683187046.0740414-CDS-P-wetherbeei_contig8546:40..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8546 41..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8546.1.1prot_P-wetherbeei_contig8546.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8546 41..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8546.1.1

>prot_P-wetherbeei_contig8546.1.1 ID=prot_P-wetherbeei_contig8546.1.1|Name=mRNA_P-wetherbeei_contig8546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MVDADLAELYGVPTKRLNEQVKRNANRFPADFLFRLTRTERDEVVANCDH
LKRLKFSRALPYAFTEHGALMAASVLNTPRAVEVSLFVVRAFVQLRETLG
AHKELAKRLDELESRIERKFSSHDQAIAGILDAIRGLMVPT*
back to top

mRNA from alignment at P-wetherbeei_contig8546:2..544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8546.1.1 ID=mRNA_P-wetherbeei_contig8546.1.1|Name=mRNA_P-wetherbeei_contig8546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig8546:2..544- (Phaeothamnion wetherbeei SAG_119_79)
CACAAAAAAGAGGATAGCGTCTTGGCGGCGACTGGCGGCATTGCTCGACG TATCGTCGTACTTCGCGGACACAAGCTCATGGTCGACGCCGACCTGGCCG AGCTTTACGGCGTCCCTACAAAGAGGTTGAACGAGCAGGTCAAGCGAAAC GCCAATCGCTTTCCGGCAGACTTCCTGTTCCGGCTCACACGCACAGAACG GGATGAGGTGGTCGCAAATTGCGACCACCTCAAGCGGCTCAAGTTCTCCC GTGCGCTGCCCTACGCCTTTACTGAGCACGGAGCCCTCATGGCGGCTTCG GTCCTGAATACCCCGCGCGCGGTCGAAGTTAGCCTGTTCGTCGTACGAGC GTTCGTGCAGCTGAGGGAAACACTTGGTGCCCACAAGGAGCTTGCGAAAC GGCTGGACGAACTGGAGTCCAGGATCGAGCGAAAATTTTCGTCACATGAT CAGGCTATCGCCGGCATCCTGGACGCAATCAGGGGGCTTATGGTTCCTAC TTAGAGTTCAAGAAAGCGGGGAATCGGGTTCGTACAGACAGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8546:2..544-

>mRNA_P-wetherbeei_contig8546.1.1 ID=mRNA_P-wetherbeei_contig8546.1.1|Name=mRNA_P-wetherbeei_contig8546.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig8546:2..544- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGACGCCGACCTGGCCGAGCTTTACGGCGTCCCTACAAAGAGGTT
GAACGAGCAGGTCAAGCGAAACGCCAATCGCTTTCCGGCAGACTTCCTGT
TCCGGCTCACACGCACAGAACGGGATGAGGTGGTCGCAAATTGCGACCAC
CTCAAGCGGCTCAAGTTCTCCCGTGCGCTGCCCTACGCCTTTACTGAGCA
CGGAGCCCTCATGGCGGCTTCGGTCCTGAATACCCCGCGCGCGGTCGAAG
TTAGCCTGTTCGTCGTACGAGCGTTCGTGCAGCTGAGGGAAACACTTGGT
GCCCACAAGGAGCTTGCGAAACGGCTGGACGAACTGGAGTCCAGGATCGA
GCGAAAATTTTCGTCACATGATCAGGCTATCGCCGGCATCCTGGACGCAA
TCAGGGGGCTTATGGTTCCTACTTAG
back to top