mRNA_P-wetherbeei_contig8541.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8541.1.1
Unique NamemRNA_P-wetherbeei_contig8541.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8541.1.1 vs. uniprot
Match: A0A7C2YRG9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YRG9_9PROT)

HSP 1 Score: 204 bits (519), Expect = 4.330e-62
Identity = 100/187 (53.48%), Postives = 131/187 (70.05%), Query Frame = 1
Query:   82 APGQGGYVHFFVVRPPGDGEWEVQVGIEMPDQRIAWSFLDLGVVVSPFIELGTVEVNRKRYEVEYLYGLRPFPDATAMRTLRSELEARVLPFAEAETPYCIVRGPSDPACVSCLGFVLRILFPGATPAYALLPHDFERTALKTIYNTDDLLLYLTGMNNLNDKEARLKRADELALPGSMRDDVIRLV 642
            A G  GYVHFF++R   D   E QVGI++  +RIAWSF  LGV+V+PF++ G+VEVN KRYE E+LYGLRPFPD  +MR L+++L  RV P+ E  TPYC +R   DP C+SCL F +R+LFPG  P  A+LP +F+RT     + TDDLLLYL G+  L D+ ARL+R + L LP ++R D + LV
Sbjct:   72 AEGHAGYVHFFLLRDAED-TTETQVGIQLEGERIAWSFPALGVIVTPFLKSGSVEVNGKRYEWEHLYGLRPFPDERSMRALQADLPWRVAPYVEDGTPYCYLRARGDPFCLSCLDFAVRVLFPGYFPEPAVLPREFQRTTHAAAHTTDDLLLYLLGLQALPDRAARLRRIERLRLPENLRADAVSLV 257          
BLAST of mRNA_P-wetherbeei_contig8541.1.1 vs. uniprot
Match: A0A3N5WFM9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5WFM9_9PROT)

HSP 1 Score: 199 bits (507), Expect = 3.320e-60
Identity = 107/218 (49.08%), Postives = 138/218 (63.30%), Query Frame = 1
Query:    1 IAPALDAKSGAPADQRNTLAFAGVTGTAPGQGGYVHFFVVRPPGDGEWEVQVGIEMPDQRIAWSFLDLGVVVSPFIELGTVEVNRKRYEVEYLYGLRPFPDATAMRTLRSELEARVLPFAEAETPYCIVRGPSDPACVSCLGFVLRILFPGATPAYALLPHDFERTALKTIYNTDDLLLYLTGMNNLNDKEARLKRADELALPGSMRDDVIRLVNMMD 654
            + P  +  + A    R++      TG APGQ GYVH+F++R P D   EVQVGIE+ DQRIAWSF DLGVV+SPFI  G V+   K Y+V +LY +RPFPD  AM  LR  L AR+ P+  A  PYC+   P +  C+SCLGFVLR+LFPG    Y  LP DF  T   + Y  +DLLLYL+GM  L ++ ARL+R  +L LP  +R D+  LV+ M+
Sbjct:   48 VLPVSNTPAAATVAARSSRPLQSATGVAPGQAGYVHYFLLRMPDDST-EVQVGIELEDQRIAWSFPDLGVVISPFIAGGEVQAGGKTYDVWHLYAIRPFPDDAAMARLRKALPARIGPWVTAGIPYCLDDSPQN-QCMSCLGFVLRVLFPGRGGDYPSLPRDFHYTTNPSQYTPNDLLLYLSGMPELPNRNARLQRLAQLNLPDDLRMDLEELVHTMN 263          
BLAST of mRNA_P-wetherbeei_contig8541.1.1 vs. uniprot
Match: A0A7C2YDV6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C2YDV6_9PROT)

HSP 1 Score: 187 bits (474), Expect = 3.660e-55
Identity = 96/194 (49.48%), Postives = 122/194 (62.89%), Query Frame = 1
Query:   70 VTGTAPGQGGYVHFFVVRPPGDGEWEVQVGIEMPDQRIAWSFLDLGVVVSPFIELGTVEVNRKRYEVEYLYGLRPFPDATAMRTLRSELEARVLPFAEAETPYCIVRGPSDPACVSCLGFVLRILFPGATPAYALLPHDFERTALKTIYNTDDLLLYLTGMNNLNDKEARLKRADELALPGSMRDDVIRLVNMM 651
            VTG   GQ GYVH+F++R P DG  E Q+G+E  +  IAWSF D+GV+VSPFI  G +E   K YEV +LYG+RPFPD  +M  LR  L AR+    E   PYC   GP   AC+SCLGFV+R+LFPG    Y  +P DF        Y T DLLLYLTG+ +L  +EARL+R + L +P  MR D+  L+  +
Sbjct:   78 VTGPGAGQSGYVHYFLLRLP-DGAIEHQIGVETEEGNIAWSFPDIGVIVSPFIYDGAIEAAGKSYEVTHLYGVRPFPDEASMAALRKALPARIRKLTERAIPYCENDGPQS-ACMSCLGFVMRVLFPGRNDDYPEVPRDFAARVTAERYTTHDLLLYLTGLLHLPTREARLQRLNRLTVPDQMRADLQTLIRAL 269          
BLAST of mRNA_P-wetherbeei_contig8541.1.1 vs. uniprot
Match: A0A7C3NZH9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NZH9_9PROT)

HSP 1 Score: 115 bits (288), Expect = 2.060e-28
Identity = 78/180 (43.33%), Postives = 94/180 (52.22%), Query Frame = 1
Query:   55 LAFAGV------TGTAPGQGGYVHFFVVRPPGDGEWEVQVGIEMPDQRIAWSFLDLGVVVSPFIELGTVEVNRKRYEVEYLYGLRPFPDATAMRTLRSELEARVLPFAEA----ETPY-------CIVRG------PSDPACVSCLGFVLR-------ILFPGATPAYALLPHDFERTAL 504
            LA AG+      TGT  GQ GYVH+F++  P D   E+QVGIE+PDQRIAWSF D G V SPFIE G      K YE+ +LYG+RPFPD  AM  LR EL  R+ P+  A    E P        C +        P  PA  +  G+  R       +  P +    ALLPH  ER AL
Sbjct:   27 LAHAGIEPLVTATGTGAGQAGYVHYFLIGSPDDA-LEIQVGIELPDQRIAWSFPDPGAVASPFIESGVTPAGGKDYELFHLYGIRPFPDDGAMAALRRELADRLQPWLAASGAREPPRDTRPRTCCFISRAGSSSRPGKPASSASPGWRFRAACGRKKLTVPMSKDLAALLPHPPERHAL 205          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7C2YRG9_9PROT4.330e-6253.48Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A3N5WFM9_9PROT3.320e-6049.08Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C2YDV6_9PROT3.660e-5549.48Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A7C3NZH9_9PROT2.060e-2843.33Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8541contigP-wetherbeei_contig8541:1469..2122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size654
Hectar predicted targeting categoryother localisation
Exons1
Cds size654
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187045.9636843-CDS-P-wetherbeei_contig8541:1468..21221683187045.9636843-CDS-P-wetherbeei_contig8541:1468..2122Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8541 1469..2122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8541.1.1prot_P-wetherbeei_contig8541.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8541 1469..2122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8541.1.1

>prot_P-wetherbeei_contig8541.1.1 ID=prot_P-wetherbeei_contig8541.1.1|Name=mRNA_P-wetherbeei_contig8541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=218bp
IAPALDAKSGAPADQRNTLAFAGVTGTAPGQGGYVHFFVVRPPGDGEWEV
QVGIEMPDQRIAWSFLDLGVVVSPFIELGTVEVNRKRYEVEYLYGLRPFP
DATAMRTLRSELEARVLPFAEAETPYCIVRGPSDPACVSCLGFVLRILFP
GATPAYALLPHDFERTALKTIYNTDDLLLYLTGMNNLNDKEARLKRADEL
ALPGSMRDDVIRLVNMMD
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mRNA from alignment at P-wetherbeei_contig8541:1469..2122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8541.1.1 ID=mRNA_P-wetherbeei_contig8541.1.1|Name=mRNA_P-wetherbeei_contig8541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig8541:1469..2122- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCCCCGCGCTCGATGCAAAGTCAGGGGCGCCCGCCGATCAGCGCAA TACATTGGCTTTCGCCGGCGTGACGGGAACCGCGCCGGGCCAGGGAGGAT ACGTGCATTTTTTTGTCGTCCGCCCGCCCGGCGACGGCGAGTGGGAGGTG CAGGTCGGCATTGAAATGCCCGACCAGCGCATCGCCTGGTCCTTCCTCGA CCTGGGTGTCGTCGTATCGCCGTTCATCGAACTGGGCACGGTGGAGGTCA ACCGCAAGCGCTATGAGGTCGAATACCTGTACGGCCTGCGCCCTTTCCCG GACGCCACTGCGATGCGCACCCTGCGGTCGGAACTTGAAGCCCGCGTGCT GCCGTTTGCCGAAGCCGAAACGCCCTACTGTATAGTGCGCGGCCCGTCCG ACCCCGCCTGCGTAAGCTGCCTCGGCTTCGTGCTGCGCATCCTGTTCCCG GGCGCCACGCCGGCTTACGCGCTGCTGCCGCACGATTTCGAACGCACCGC GCTGAAAACCATCTACAACACCGACGACCTGCTGCTCTATCTCACCGGAA TGAACAACCTCAACGACAAAGAAGCCCGCCTCAAACGCGCCGACGAACTG GCGCTGCCGGGCAGTATGCGCGACGACGTAATCCGGCTCGTCAACATGAT GGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8541:1469..2122-

>mRNA_P-wetherbeei_contig8541.1.1 ID=mRNA_P-wetherbeei_contig8541.1.1|Name=mRNA_P-wetherbeei_contig8541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig8541:1469..2122- (Phaeothamnion wetherbeei SAG_119_79)
ATCGCCCCCGCGCTCGATGCAAAGTCAGGGGCGCCCGCCGATCAGCGCAA
TACATTGGCTTTCGCCGGCGTGACGGGAACCGCGCCGGGCCAGGGAGGAT
ACGTGCATTTTTTTGTCGTCCGCCCGCCCGGCGACGGCGAGTGGGAGGTG
CAGGTCGGCATTGAAATGCCCGACCAGCGCATCGCCTGGTCCTTCCTCGA
CCTGGGTGTCGTCGTATCGCCGTTCATCGAACTGGGCACGGTGGAGGTCA
ACCGCAAGCGCTATGAGGTCGAATACCTGTACGGCCTGCGCCCTTTCCCG
GACGCCACTGCGATGCGCACCCTGCGGTCGGAACTTGAAGCCCGCGTGCT
GCCGTTTGCCGAAGCCGAAACGCCCTACTGTATAGTGCGCGGCCCGTCCG
ACCCCGCCTGCGTAAGCTGCCTCGGCTTCGTGCTGCGCATCCTGTTCCCG
GGCGCCACGCCGGCTTACGCGCTGCTGCCGCACGATTTCGAACGCACCGC
GCTGAAAACCATCTACAACACCGACGACCTGCTGCTCTATCTCACCGGAA
TGAACAACCTCAACGACAAAGAAGCCCGCCTCAAACGCGCCGACGAACTG
GCGCTGCCGGGCAGTATGCGCGACGACGTAATCCGGCTCGTCAACATGAT
GGAT
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