mRNA_P-wetherbeei_contig853.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig853.3.1
Unique NamemRNA_P-wetherbeei_contig853.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig853.3.1 vs. uniprot
Match: A0A6H5KWP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP4_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.660e-22
Identity = 67/181 (37.02%), Postives = 91/181 (50.28%), Query Frame = 1 
Query:    1 DAAASAESFKLILVREGLLAKLEDICASLRMRKPPPRGDSTVSNGRDAFRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------FLYRGENYLLKMANDLNFLAGVMPLVTALRIHPAKLCRNPMMLPHTLDDQEPESPI--GGGSTQSPRSAERALLCRAAAAIRQEELWEADRD 516
            D A+     K IL RE LL++LE +C SLR R   P   +T  +G  A   E+                                    F++ G+NYLLK+ NDLNFLAGV PLV  L++HPA+ CRNP+MLP TLD+Q  +  +   G +T SP + +R  L + A  +  EE  E +RD
Sbjct:   69 DPASELLVLKHILTRECLLSRLEAVCGSLRKRFQLPAAKATADSGTTARNTEDGNGVVALLSRMRDATVAVIEAISVWRKDMTGHLPPAFVWHGDNYLLKITNDLNFLAGVQPLVDTLKMHPARFCRNPLMLPQTLDEQRRDGELCESGVNTTSPGAGKRRHLYQVAQVLLDEEGLERERD 249
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BLAST of mRNA_P-wetherbeei_contig853.3.1 vs. uniprot
Match: D8LTD9_ECTSI (RNA-binding region-containing protein (RNP-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD9_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.680e-22
Identity = 68/181 (37.57%), Postives = 90/181 (49.72%), Query Frame = 1 
Query:    1 DAAASAESFKLILVREGLLAKLEDICASLRMRKPPPRGDSTVSNGRDAFRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------FLYRGENYLLKMANDLNFLAGVMPLVTALRIHPAKLCRNPMMLPHTLDDQEPESPI--GGGSTQSPRSAERALLCRAAAAIRQEELWEADRD 516
            D A+     K IL RE LL++LE +C SLR R   P   +T  NG  A   E+                                    F++ G+NYLLK+ NDLNFLAGV PLV  L++HPA+ CRNP+MLP TLD+Q  +  +   G  T SP + +R  L + A  +  EE  E +RD
Sbjct:   69 DPASELLVLKHILTRECLLSRLEAVCGSLRKRFQLPAAKTTSDNGTTARMTEDGDGVVALLSRMRDATVAVIEAISVWRKDMTGHLPTAFVWHGDNYLLKITNDLNFLAGVQPLVDTLKMHPARFCRNPLMLPQTLDEQRRDGELCESGVDTTSPGARKRRHLYQVAQVLLDEEGLERERD 249
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BLAST of mRNA_P-wetherbeei_contig853.3.1 vs. uniprot
Match: A0A836CMT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.360e-17
Identity = 69/140 (49.29%), Postives = 81/140 (57.86%), Query Frame = 1 
Query:    1 DAAASAESFKLILVREGLLAKLEDICASLRMRKPPPRGDSTVSNG--------RDAFRAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLYRGENYLLKMANDLNFLAGVMPLVTALRIHPAKLCRNPMMLPHTLDDQ 396
            D  A  +  K IL+REGL+ +LE +   LR        D T  +G        RD                     XXXXXXXXXXXXX F++RGENYLLK  NDLNFLAG+ PLV ALR+HPAKLCRNP+ML  TLD+Q
Sbjct:   48 DPQAELQVLKKILIREGLMERLEGLGEQLRRNSLASPADGTADSGVLELLLSLRDVTVEVIGAVLRWREASGVAPPXXXXXXXXXXXXXAFVWRGENYLLKAVNDLNFLAGIKPLVRALRMHPAKLCRNPLMLQETLDEQ 187
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BLAST of mRNA_P-wetherbeei_contig853.3.1 vs. uniprot
Match: F0YG15_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG15_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.050e-7
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:  247 FLYRGENYLLKMA-NDLNFLAGVMPLVTALRIHPAKLCRNPMMLPHTLDDQEPE---SPIGGG---------STQSPRSAERALLCRAAAAIRQEELWEA 507
            FL+ G NY LKMA +D++F+  + PL  AL +  AK+ RNP+MLP TLD+   +   SP+GG          + + PR  E+  L  A   +  EE  EA
Sbjct: 3137 FLWHGRNYALKMAVSDMDFVGAIEPLAEALGVPSAKMRRNPLMLPRTLDEARADGAGSPLGGAPEEDELATDAPEDPRRREKRRLEAAERLLLDEERLEA 3236
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig853.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KWP4_9PHAE2.660e-2237.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTD9_ECTSI2.680e-2237.57RNA-binding region-containing protein (RNP-1) n=1 ... [more]
A0A836CMT4_9STRA3.360e-1749.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0YG15_AURAN4.050e-739.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig853contigP-wetherbeei_contig853:5446..6780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTD9
PFAMsHA2,Helicase_C,OB_NTP_bind,RRM_1,S1
Model size876
Max annot lvl2759|Eukaryota
KEGG koko:K12818,ko:K12837
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.4e-23
EggNOG OGsKOG0120@1|root,KOG0120@2759|Eukaryota
EC3.6.4.13
Descriptionpre-mRNA 3'-splice site binding
Cds size876
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187045.3803015-CDS-P-wetherbeei_contig853:5445..55691683187045.3803015-CDS-P-wetherbeei_contig853:5445..5569Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig853 5446..5569 +
1683187045.392756-CDS-P-wetherbeei_contig853:5824..61241683187045.392756-CDS-P-wetherbeei_contig853:5824..6124Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig853 5825..6124 +
1683187045.4030116-CDS-P-wetherbeei_contig853:6238..65531683187045.4030116-CDS-P-wetherbeei_contig853:6238..6553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig853 6239..6553 +
1683187045.4148636-CDS-P-wetherbeei_contig853:6643..67801683187045.4148636-CDS-P-wetherbeei_contig853:6643..6780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig853 6644..6780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig853.3.1prot_P-wetherbeei_contig853.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig853 5446..6780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig853.3.1

>prot_P-wetherbeei_contig853.3.1 ID=prot_P-wetherbeei_contig853.3.1|Name=mRNA_P-wetherbeei_contig853.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
DAAASAESFKLILVREGLLAKLEDICASLRMRKPPPRGDSTVSNGRDAFR
AEEEAAAAAAAPLSQPQLATATTPPMAPPPPPFLYRGENYLLKMANDLNF
LAGVMPLVTALRIHPAKLCRNPMMLPHTLDDQEPESPIGGGSTQSPRSAE
RALLCRAAAAIRQEELWEADRDRRRAAAGAAAVAAAAPAAPMAANGASSA
SGWHDSGAGIVPAEEKDDAADNAVVAGGSSATTGNGGGGCCNGSGNIREQ
NTLVEKPRLVNTSRWYVEATQQLIGLSLNNADFDYYRNSRRF
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mRNA from alignment at P-wetherbeei_contig853:5446..6780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig853.3.1 ID=mRNA_P-wetherbeei_contig853.3.1|Name=mRNA_P-wetherbeei_contig853.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig853:5446..6780+ (Phaeothamnion wetherbeei SAG_119_79)
GATGCTGCAGCGTCTGCGGAGTCTTTCAAATTGATTCTCGTTCGAGAGGG
GCTTCTCGCCAAACTGGAGGACATATGTGCCTCTCTAAGGATGAGAAAGC
CACCGCCGCGCGGCGACTCTACGGGTTCTGGCGGCAGCGTCCACCGAGGC
AGAAAAGCTGAGCCTGTCGACGCGAGTAATGCACCAGGCGAAGACCCCGC
CAGCCCCGAGCCGAGCGTGTGGTCGACGGAAACGGAAGCCGCCGCCGTCG
CTCACGCGCTGAAGGTCATGGCCTCGCTGAGATCCGCGTCGGCGGGGGTC
GTGGAAGCCGTCGCATCATGGCAGCGCTTTTCCTCCGTTCCCCTCGTGCC
CCTGATACCGCCGCCTCCGCTGCCGCCAGTCTCGAACGGACGGGATGCTT
TCCGAGCAGAGGAGGAGGCAGCAGCCGCGGCGGCTGCGCCGCTCTCGCAA
CCACAACTGGCAACAGCAACAACCCCGCCGATGGCGCCGCCGCCGCCGCC
GTTCCTCTACCGCGGGGAAAATTACTTGCTCAAAATGGCCAATGACCTCA
ACTTTCTCGCCGGGGTGATGCCGCTCGTCACCGCCCTGCGGATCCACCCG
GCAAAGCTGTGCCGCAACCCGATGATGCTGCCGCACACCCTCGACGACCA
AGAGCCGGAGTCGCCTATCGGCGGTGGCTGTTCCGGCTGCACCGGCGGCG
GCGGTGGCGGCGGCGGCGAAAGCGGCGGCAGGAAAGGCGGCGACATGGAG
GGCAGGCCGGCACGTTGTGCTACTGGGGAAATCGGCTTGCCAGCAACACA
GAGCCCGCGGAGCGCCGAACGGGCGCTGCTCTGCCGCGCCGCCGCCGCCA
TCCGGCAAGAGGAACTATGGGAGGCGGATCGGGACAGGCGGCGCGCCGCA
GCGGGAGCAGCGGCCGTGGCGGCAGCGGCGCCGGCTGCCCCGATGGCAGC
CAACGGCGCCAGCTCGGCCTCTGGCTGGCACGACAGCGGTGCAGGGATTG
TGCCGGCGGAAGAGAAAGACGACGCTGCCGACAATGCCGTCGTCGCTGGC
GGCAGCAGCGCAACAACTGGAAACGGCGGTGGTGGTTGCTGCAACGGCAG
TGGAAACAGTGCCAATGGCGGTGGCGACGGCGGCGGCAGCAGCAACGGCG
GCGGCAGCAGCAACGGCGGCGGTGTCAGAGAGCCGCCCATGGAAGCAGTT
AGGGAACAGAACACTCTGGTGGAAAAACCCCGACTCGTAAACACATCGCG
TTGGTATGTAGAGGCTACCCAGCAGCTGATCGGGCTCAGCCTCAATAACG
CTGACTTTGATTATTATCGCAATAGCCGCCGGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig853:5446..6780+

>mRNA_P-wetherbeei_contig853.3.1 ID=mRNA_P-wetherbeei_contig853.3.1|Name=mRNA_P-wetherbeei_contig853.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig853:5446..6780+ (Phaeothamnion wetherbeei SAG_119_79)
GATGCTGCAGCGTCTGCGGAGTCTTTCAAATTGATTCTCGTTCGAGAGGG
GCTTCTCGCCAAACTGGAGGACATATGTGCCTCTCTAAGGATGAGAAAGC
CACCGCCGCGCGGCGACTCTACGGTCTCGAACGGACGGGATGCTTTCCGA
GCAGAGGAGGAGGCAGCAGCCGCGGCGGCTGCGCCGCTCTCGCAACCACA
ACTGGCAACAGCAACAACCCCGCCGATGGCGCCGCCGCCGCCGCCGTTCC
TCTACCGCGGGGAAAATTACTTGCTCAAAATGGCCAATGACCTCAACTTT
CTCGCCGGGGTGATGCCGCTCGTCACCGCCCTGCGGATCCACCCGGCAAA
GCTGTGCCGCAACCCGATGATGCTGCCGCACACCCTCGACGACCAAGAGC
CGGAGTCGCCTATCGGCGGTGGCTCAACACAGAGCCCGCGGAGCGCCGAA
CGGGCGCTGCTCTGCCGCGCCGCCGCCGCCATCCGGCAAGAGGAACTATG
GGAGGCGGATCGGGACAGGCGGCGCGCCGCAGCGGGAGCAGCGGCCGTGG
CGGCAGCGGCGCCGGCTGCCCCGATGGCAGCCAACGGCGCCAGCTCGGCC
TCTGGCTGGCACGACAGCGGTGCAGGGATTGTGCCGGCGGAAGAGAAAGA
CGACGCTGCCGACAATGCCGTCGTCGCTGGCGGCAGCAGCGCAACAACTG
GAAACGGCGGTGGTGGTTGCTGCAACGGCAGTGGAAACATTAGGGAACAG
AACACTCTGGTGGAAAAACCCCGACTCGTAAACACATCGCGTTGGTATGT
AGAGGCTACCCAGCAGCTGATCGGGCTCAGCCTCAATAACGCTGACTTTG
ATTATTATCGCAATAGCCGCCGGTTC
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