mRNA_P-wetherbeei_contig8519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8519.1.1
Unique NamemRNA_P-wetherbeei_contig8519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8519contigP-wetherbeei_contig8519:939..1771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size718
Hectar predicted targeting categoryother localisation
Exons2
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.8187065-UTR-P-wetherbeei_contig8519:938..9961683187044.8187065-UTR-P-wetherbeei_contig8519:938..996Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8519 939..996 +
1683187044.8434849-UTR-P-wetherbeei_contig8519:1501..17711683187044.8434849-UTR-P-wetherbeei_contig8519:1501..1771Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8519 1502..1771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.8274093-CDS-P-wetherbeei_contig8519:996..12541683187044.8274093-CDS-P-wetherbeei_contig8519:996..1254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8519 997..1254 +
1683187044.835394-CDS-P-wetherbeei_contig8519:1369..15011683187044.835394-CDS-P-wetherbeei_contig8519:1369..1501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8519 1370..1501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8519.1.1prot_P-wetherbeei_contig8519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8519 997..1501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8519.1.1

>prot_P-wetherbeei_contig8519.1.1 ID=prot_P-wetherbeei_contig8519.1.1|Name=mRNA_P-wetherbeei_contig8519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MTLVDKEHLANWIDISAHSRDSEATRVLLCFAIERGLTIDTTGKLATRLK
ILAVDEGLQDVLSKTRPVQPGVGEAYNKLSAAFDELEQALSRFVQPYPKK
PGGASWFVIKLWIARQVCFCALFSWPLSI*
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mRNA from alignment at P-wetherbeei_contig8519:939..1771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8519.1.1 ID=mRNA_P-wetherbeei_contig8519.1.1|Name=mRNA_P-wetherbeei_contig8519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=833bp|location=Sequence derived from alignment at P-wetherbeei_contig8519:939..1771+ (Phaeothamnion wetherbeei SAG_119_79)
TAGTAGGCGACACGGCGACAGCCACGCATCCACAGCGTCTCTATCGTTTC
GTGGGACAATGACGTTGGTCGACAAGGAACACCTTGCGAACTGGATCGAT
ATCTCGGCGCACAGCCGTGACAGCGAAGCCACGAGGGTGCTGCTATGCTT
CGCGATTGAACGCGGACTCACCATTGACACCACTGGGAAGCTTGCTACCC
GTCTGAAGATTCTGGCCGTGGACGAAGGGCTCCAGGACGTTTTGAGCAAA
ACCCGGCCAGTGCAACCCGGTGTCGGGGAGGCGTACAACAAACTGTCGGC
CGCCTTCGACGAGCTCGTGAGTCCTGCGACGCCGCGATTACTTAGCAGAT
GGTTCGGGGCAGGTTGCCGGTTTCCAGATGGCGCGGAGAGCTCAAGATTT
GCGTAATATCTCGTTTGCCCAATCGAAACAGGAGCAGGCGCTCTCGCGAT
TTGTCCAGCCGTACCCGAAGAAGCCCGGCGGCGCATCGTGGTTCGTCATC
AAGCTCTGGATCGCGCGGCAGGTTTGTTTTTGCGCCCTTTTCTCATGGCC
CCTCTCCATTTAAACCTCAGTGTTATTTGGCCTGGTAACGAGGAAGACGG
GCAGCCCATTTATGCAAATCAAAAGCTTGCTCTAGCCGGCGTGTCAAGCA
GATCGCACTCCTCGTGCCACTTCCCTTCATGCGTTGCCCGAGTTTTCATT
TTAGCGGTCATCCCCCGTCTGGCGCCGTTGCCGTATGACGACCCGCGTCA
CCGCTTCCGTTCCCCGATTTTACGCTCCTTTTTTCATTGCTTCAGGCGGC
GCTGGCGAAGCTGGCGGTGGACATGGCGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8519:939..1771+

>mRNA_P-wetherbeei_contig8519.1.1 ID=mRNA_P-wetherbeei_contig8519.1.1|Name=mRNA_P-wetherbeei_contig8519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig8519:939..1771+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTGGTCGACAAGGAACACCTTGCGAACTGGATCGATATCTCGGC
GCACAGCCGTGACAGCGAAGCCACGAGGGTGCTGCTATGCTTCGCGATTG
AACGCGGACTCACCATTGACACCACTGGGAAGCTTGCTACCCGTCTGAAG
ATTCTGGCCGTGGACGAAGGGCTCCAGGACGTTTTGAGCAAAACCCGGCC
AGTGCAACCCGGTGTCGGGGAGGCGTACAACAAACTGTCGGCCGCCTTCG
ACGAGCTCGAGCAGGCGCTCTCGCGATTTGTCCAGCCGTACCCGAAGAAG
CCCGGCGGCGCATCGTGGTTCGTCATCAAGCTCTGGATCGCGCGGCAGGT
TTGTTTTTGCGCCCTTTTCTCATGGCCCCTCTCCATTTAA
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