mRNA_P-wetherbeei_contig8513.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8513.1.2
Unique NamemRNA_P-wetherbeei_contig8513.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: D7FZQ1_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ1_ECTSI)

HSP 1 Score: 313 bits (801), Expect = 2.910e-98
Identity = 162/253 (64.03%), Postives = 196/253 (77.47%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLL-EDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQ 886
            +  +V++DEVDTML QGF  DI+KL  P+L +  R++  QFIFVTATLTKAVR+LL EDGDY KVR VETRDVH  LPS++H M+D KGRDK+++L+D+  Q+    +RTLVFCNTVKSC+A E  +RE  +    YHGEVPS +R+ NL RFK G+ ++LV TDIA+RGLDMP+V HV+ FDFPLNPIDYLHRSGRTARMGA      +GRVTSLLAKRD VLA AIE+AV SG  LDELSSRR DY   G+
Sbjct:  173 KANYVVVDEVDTMLTQGFAADIEKLNRPLLANPNRRDMAQFIFVTATLTKAVRKLLGEDGDYSKVRQVETRDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQHLKDFKRTLVFCNTVKSCRAAEFGLREVDVKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGA------KGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGK 419          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A6H5KY63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY63_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 4.210e-98
Identity = 164/253 (64.82%), Postives = 197/253 (77.87%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLL-EDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQ 886
            +  +VI+DEVDTML QGF  DI+KL  P+L +  R+++ QFIFVTATLTKAVR+LL EDGDYPKVR VET DVH  LPS++H M+D KGRDK+++L+D+  Q+    +RTLVFCNTVKSC+A E  +RE  L    YHGEVPS +R+ NL RFK G+ ++LV TDIA+RGLDMP+V HV+ FDFPLNPIDYLHRSGRTARMGA      +GRVTSLLAKRD VLA AIE+AV SG  LDELSSRR DY   G+
Sbjct:  290 KANYVIVDEVDTMLTQGFAADIEKLSRPLLANPNRRDTAQFIFVTATLTKAVRKLLGEDGDYPKVRQVETSDVHHTLPSLRHVMIDIKGRDKMSALIDIAQQHYKDFKRTLVFCNTVKSCRAAEFGLREVDLKALSYHGEVPSDERSSNLERFKAGQAKYLVCTDIASRGLDMPDVDHVVMFDFPLNPIDYLHRSGRTARMGA------KGRVTSLLAKRDLVLAAAIEQAVQSGLPLDELSSRRTDYATGGK 536          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A836CEI1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEI1_9STRA)

HSP 1 Score: 310 bits (794), Expect = 5.450e-97
Identity = 167/263 (63.50%), Postives = 201/263 (76.43%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGR--------VERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLA 895
            QVTHV+IDEVDTML QGFGPDI  LV P++   + +++VQF+ V+AT+T A+R+LLE G++PKVR VETRDVH+ LP+MKHAMVD KGRDKL+ LL+VL Q+ G           RTL+FCNTV S +AV+HA+R+AG+    YHGEVPS  RA  L  F+ G    LVATD+AARGLD+P V HVI FDFPLNP+DYLHRSGRTARMGA      +GRVTSLLAKRDRVLA AIE AVL+G  LD L++RR DYL PG +LA
Sbjct:  171 QVTHVVIDEVDTMLTQGFGPDITALVKPLMRR-QGEDAVQFVLVSATVTAALRRLLEAGEFPKVRMVETRDVHRALPNMKHAMVDCKGRDKLSVLLEVLAQHGGSGSSAAAQAAARTLIFCNTVASARAVDHALRDAGVAAAAYHGEVPSAQRAAALAAFRAGSPPRLVATDVAARGLDLPEVGHVIMFDFPLNPVDYLHRSGRTARMGA------RGRVTSLLAKRDRVLAAAIEAAVLAGRPLDALTARRTDYL-PGGKLA 425          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A7S2WDP9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDP9_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.230e-88
Identity = 148/255 (58.04%), Postives = 192/255 (75.29%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLA 895
            QVTHVIIDEVDTML+QGFGPDIK+L+GP+L S +RK+ VQFI  TAT+T+AV++LL++G  P +R +ET D+H+ +P+  H MV+ +GRDK+  LL+V+     R E+TLVFCNTV SC+AVEHA+R+AG     YHGE+ S  R E+L  FK  +V  LV TD+A+RGLDMP+VA V+ FDFP NPIDYLHRSGRTAR G       +G + SL+AKRD  L+TAIE+A+  G  LD+L++ R DY +PG RLA
Sbjct:  230 QVTHVIIDEVDTMLVQGFGPDIKELLGPILFSPQRKSEVQFILATATMTQAVKRLLDEGGLPPMRILETSDLHQAVPTAMHRMVNAQGRDKIQLLLEVIRDTNLRNEQTLVFCNTVLSCRAVEHALRDAGCSSLGYHGEMNSAARLESLEAFKAADVPTLVCTDLASRGLDMPSVARVVMFDFPPNPIDYLHRSGRTARFGQ------RGEIVSLVAKRDLPLSTAIERAIAKGEPLDQLTNNRRDY-QPGGRLA 477          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A7S3XYE8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYE8_HETAK)

HSP 1 Score: 285 bits (728), Expect = 1.480e-88
Identity = 157/257 (61.09%), Postives = 193/257 (75.10%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDY--PKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLA 895
            +VTHV+IDE+DTMLMQGFGP+IKKL+  +      ++  QF+  TATLTKAVR+ LE+ +Y     R VE  DVH+ LP+++HAMVDTKGRDK+  LLDVL Q+  R + T+VFCNTVKS Q ++H++ EAGL    YHGEV   +R ENL RFK GEVR LVATDIAARGLD+P+V HV+ FDFPLNP+DYLHRSGRTARMGA+      G VTS+LAKRDRVLA AIE AV  G  LD L++ + DY E G++LA
Sbjct:   85 RVTHVVIDEMDTMLMQGFGPEIKKLIQTL-----DRDRCQFLLCTATLTKAVRRFLEEENYIPGPPRVVEASDVHRSLPNLRHAMVDTKGRDKVTVLLDVLFQH--REKTTIVFCNTVKSAQMLDHSLAEAGLRALCYHGEVRGDERRENLARFKRGEVRFLVATDIAARGLDVPDVEHVVMFDFPLNPVDYLHRSGRTARMGAS------GMVTSVLAKRDRVLAGAIEAAVRKGLPLDTLTASKRDYQE-GKKLA 327          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A4D9D2M2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2M2_9STRA)

HSP 1 Score: 281 bits (718), Expect = 2.240e-84
Identity = 144/256 (56.25%), Postives = 193/256 (75.39%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLL-EDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLA 895
            QVTHV++DE+DTML  GFGPD+K+L+ P L +  ++  VQ++  TATLT AV++L+ E+G++PK R +++ D HK LP+M+H M+DTKG DK+  LLDV+ Q +   ER ++FCNTV+SC+A EHA+RE  L    YHG++ S +RA  L++FK GEV  LV TDIA+RGLDMP V HV+ FDFPLNPI+YLHRSGRTARMGA      +G+VTSLL KRD+VLA+A++ AV  G  LD LS+R+ DY E G +L+
Sbjct:  280 QVTHVVVDEMDTMLKDGFGPDLKRLMVP-LEAKSKREKVQYLMATATLTPAVKRLMAEEGNFPKTRFLQSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQGRQNGERAMIFCNTVQSCRAAEHALRELALPSACYHGDMRSEERAAALQKFKSGEVSFLVCTDIASRGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGA------KGKVTSLLTKRDKVLASAVQTAVAKGLPLDSLSARKRDY-ESGGKLS 527          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A7S2FKV5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKV5_9STRA)

HSP 1 Score: 261 bits (668), Expect = 6.250e-78
Identity = 147/281 (52.31%), Postives = 190/281 (67.62%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVER-TLVFCNTVKSCQAVEHAVRE-------------------------AGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLA 895
            QVTHV+IDEVDTMLMQGFGPD++KL+ P+L S ER+ +VQFI VTAT+TKAVR+LLEDGD P++RT+E  D+H+ LP+  H M++  G+DK+  L D++   +G+ ++ TL+FCNTV SC+AV HA+RE                         A    R YHGE+PS +R E L  FK G+   LV TD+A RGLD+ +VA VINFDFP NPIDYLHR+GRTAR G       +G + SL+ KRD  LATAIE+AV  G  LD L++ + DY  PG RL+
Sbjct:  189 QVTHVVIDEVDTMLMQGFGPDLQKLLKPILLSPERRENVQFIVVTATMTKAVRRLLEDGDLPQMRTLEADDLHQALPNALHRMLNAAGQDKIEVLKDLV---RGKHQKPTLIFCNTVASCRAVTHALREETNNNFGDMDYDSDDAEGXXXXXXXASSPVRSYHGEMPSNERVEALGDFKAGDASILVCTDLAQRGLDIQDVAKVINFDFPRNPIDYLHRAGRTARAGR------KGEILSLVLKRDLPLATAIERAVARGEPLDGLTNDKRDYA-PGGRLS 459          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A0G4F3L1_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F3L1_VITBC)

HSP 1 Score: 249 bits (637), Expect = 3.110e-69
Identity = 137/270 (50.74%), Postives = 181/270 (67.04%), Query Frame = 2
Query:  131 QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVL--------------HQNQGRVER--TLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRL 892
            +V++V+IDEVDTMLMQGFGPDI KL+ P++   + +   Q +F TATLTKAVR+LL+  D P VR VE   +HK LP++++ M+DTKG DKL +L ++L               +  G V R  TLVFCNTV SC+A +HA++EAG     YHGEVP   R  NL  F+ G+V +LV TD+AARGLD+  V  V+ FDFPLNPID++HR+GRT R G+      +G V  LL +RDRVLAT +++A+  G  L +LSS R+DY E G RL
Sbjct:  996 EVSYVVIDEVDTMLMQGFGPDINKLLQPLITRPDTEQP-QLVFATATLTKAVRRLLDQEDLPAVRYVEAPGLHKSLPNVRYEMIDTKGEDKLDALRELLKVRGPQRPAEGGDGQRGAGEVYRKSTLVFCNTVNSCRACQHAIQEAGFTSLAYHGEVPQEQRKANLEAFRHGQVPYLVCTDLAARGLDIAQVDQVVMFDFPLNPIDFIHRAGRTGRAGS------KGSVLCLLQRRDRVLATGVQRAIRLGRPLSDLSSSRKDY-EKGGRL 1257          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A6U1QKZ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QKZ5_9STRA)

HSP 1 Score: 221 bits (562), Expect = 5.850e-66
Identity = 117/199 (58.79%), Postives = 147/199 (73.87%), Query Frame = 2
Query:  329 VETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLAMPQRPRRALA 925
            VETRD+H+ LP++KH MVD KG DK+  LLDVL+Q++G+  + +VFCNTV SC+A EHAVREAGL  + YHGE+ SI R EN+  FK  +   LV TD+A+RGLDMP V HV+ FDFPLNPID+LHRSGRTARMG        G VTS+L K DRVLATAIE+A+L+   LD+LSSR++DY + G+   M +  RR  A
Sbjct:    1 VETRDLHRTLPNLKHVMVDCKGSDKITVLLDVLYQHKGK--QAIVFCNTVASCRAAEHAVREAGLTAQGYHGEINSIQRRENIDAFKNNKFNLLVCTDLASRGLDMPTVDHVVMFDFPLNPIDFLHRSGRTARMGR------HGLVTSILTKGDRVLATAIERAILTNMPLDQLSSRKQDYGDRGKLHHMTKVGRRKAA 191          
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Match: A0A7S4LLS1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLS1_9EUGL)

HSP 1 Score: 214 bits (545), Expect = 5.840e-60
Identity = 122/282 (43.26%), Postives = 180/282 (63.83%), Query Frame = 2
Query:  116 WPRPH----QVTHVIIDEVDTMLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDYPKVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVFCNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVATDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRVTSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLAM------PQRPRRALAAP 931
            W + H    +V  V+IDEVDTML QGF  D+ + + P++ + +R   +Q IF TAT+T+ VR+ L++  +  V  +E  D+H+ +PSM+H +V TKGRDK+  L +VL+ NQ  +++T++FCN++ +  AV++ ++E G+D   YH ++P  DRA NL +FK G V  LV TDI  RGLD+ +V HVI FDFP +PID+LHR+GRTARMG T      G VTS++ K++  LA AI+ A+     LD L++   DY + G+  A+      P  PRR    P
Sbjct:  204 WKKGHFYMSEVKEVVIDEVDTMLTQGFTGDVMQFLNPIILNDDR--DLQVIFATATMTRPVRKFLQESKFADVEILEAADLHRVVPSMRHVIVQTKGRDKMDVLEEVLNANQ-MMKKTMIFCNSLAAVHAVDNTLQEFGVDVVSYHKDLPVGDRAANLEKFKSGAVSTLVCTDIGQRGLDI-DVDHVILFDFPRSPIDFLHRAGRTARMGKT------GTVTSIIHKKEYTLARAIDFAIKKDLPLDGLTTNPNDYKDGGRLAAIVGRKPKPNDPRRFKPKP 475          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8513.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ1_ECTSI2.910e-9864.03DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KY63_9PHAE4.210e-9864.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEI1_9STRA5.450e-9763.50DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2WDP9_9STRA1.230e-8858.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XYE8_HETAK1.480e-8861.09Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D2M2_9STRA2.240e-8456.25Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2FKV5_9STRA6.250e-7852.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0G4F3L1_VITBC3.110e-6950.74Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]
A0A6U1QKZ5_9STRA5.850e-6658.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4LLS1_9EUGL5.840e-6043.26Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8513contigP-wetherbeei_contig8513:2..2762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZQ1
PFAMsDEAD,Helicase_C
Model size1408
Max annot lvl2759|Eukaryota
KEGG koko:K20096
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.51e-94
EggNOG OGsCOG0513@1|root,KOG0331@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size1242
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8513.1.2prot_P-wetherbeei_contig8513.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8513 168..2762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.461456-UTR-P-wetherbeei_contig8513:1..1671683187044.461456-UTR-P-wetherbeei_contig8513:1..167Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8513 2..167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.4734106-CDS-P-wetherbeei_contig8513:167..2381683187044.4734106-CDS-P-wetherbeei_contig8513:167..238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8513 168..238 +
1683187044.4834392-CDS-P-wetherbeei_contig8513:445..5271683187044.4834392-CDS-P-wetherbeei_contig8513:445..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8513 446..527 +
1683187044.4935646-CDS-P-wetherbeei_contig8513:835..9571683187044.4935646-CDS-P-wetherbeei_contig8513:835..957Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8513 836..957 +
1683187044.503614-CDS-P-wetherbeei_contig8513:1373..15211683187044.503614-CDS-P-wetherbeei_contig8513:1373..1521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8513 1374..1521 +
1683187044.5134664-CDS-P-wetherbeei_contig8513:1782..23971683187044.5134664-CDS-P-wetherbeei_contig8513:1782..2397Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8513 1783..2397 +
1683187044.523198-CDS-P-wetherbeei_contig8513:2558..27621683187044.523198-CDS-P-wetherbeei_contig8513:2558..2762Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8513 2559..2762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8513.1.2

>prot_P-wetherbeei_contig8513.1.2 ID=prot_P-wetherbeei_contig8513.1.2|Name=mRNA_P-wetherbeei_contig8513.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=414bp
MLMQGFGPDIKKLVGPVLGSVERKNSVQFIFVTATLTKAVRQLLEDGDYP
KVRTVETRDVHKGLPSMKHAMVDTKGRDKLASLLDVLHQNQGRVERTLVF
CNTVKSCQAVEHAVREAGLDCRPYHGEVPSIDRAENLRRFKLGEVRHLVA
TDIAARGLDMPNVAHVINFDFPLNPIDYLHRSGRTARMGATTGVAAQGRV
TSLLAKRDRVLATAIEKAVLSGGRLDELSSRREDYLEPGQRLAMPQRPRR
ALAAPARAGRGGAGRSGDAGGRSDGGGRSGSSGRNGSGGGYGGGYGRSGG
DEGGRSGGGGGYGRGRVQVDGATARSAGGGGTSGAWGRRGGDAGSPPSSG
PSRPDGRPRVRPGGSERPGGGESGGRFGRRDSWLRDGDGGGGRGGGGRGG
GGRGGGGRGGGRSG
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mRNA from alignment at P-wetherbeei_contig8513:2..2762+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8513.1.2 ID=mRNA_P-wetherbeei_contig8513.1.2|Name=mRNA_P-wetherbeei_contig8513.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2761bp|location=Sequence derived from alignment at P-wetherbeei_contig8513:2..2762+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCAGCAATGATGTCTTCGTGGCAGCATTGATGTCTTGTTGGCAGAGT GTGCAGCGAGCTGTTGGTTGTTTAAACCTGTTCCCCGGCTTCTTTGATCC TGCTCCTCGGCGATTTGGCCGCGACCGCACCAGGTGACGCACGTAATAAT CGACGAAGTGGACACGATGCTGATGCAGGGTTTCGGCCCCGACATTAAAA AGCTCGTCGGTCCCGTCCTCGGCAGTGTAGAGCGGAAGTGAGTCCAGTCC GGCCACCGCCGCGCTTTTCGGCGGCACTTTCAGTTCGTCCGCGGCGTTTA GAGCGACGTCTATCTTGCTGCAAGGGTCCCAGACTAAGCCAATATCTTTT GTGGAGACGACCGATTGCTCCTCTCCTTTTCCTTTGACTCTGTCATTCAT CGCTCTGCCAAACAACTCGTGCTTCCTTACCTTTGCTCCGTCAGAAACTC CGTCCAATTCATCTTCGTGACGGCGACGCTCACAAAGGCGGTCCGGCAGC TGCTGGAAGATGGGGACTACCCCAAGGTGAGAGACTCAAGGTGCACGTCC TTTCCACTGTTGTTGGCTCAATACTGTTCCGGTCCGTCATTGACATTCTG ACCTGCCAGCGCGGTCGTCGCATGAACTTCCTTTGGTGTGTAAAGTCGGA GTCTTGCCACGCAGAACCTGCCTTTGCACTCTTCTTATGGTCCAGGTGTT GATCTCCTCTATTCGAGCCCTAATCTAGCTCTTCTGTCTCGCTTCCGACT TTGACACATGAATGGCTGCTTACGAACCGACGACGGTGTGTTTTCTCCGC CCCGGCTTTTCCCGCCCGGTTCGTCTGCCGGCAGGTGCGGACAGTGGAGA CGCGCGACGTGCACAAGGGCCTCCCTAGCATGAAGCACGCCATGGTGGAC ACCAAGGGCCGCGACAAGCTCGCCTCGCTGCTCGACGTTCTCCACCAGAA CCAGGGGTGCGTCTTCTCTTTTAGCGGATTCTGTCTGTTGCTTGGTCCTG CGGTTTGGTTTGCAATTTTGTGTATCACTTCGGTGAACGTTTTGTCTGCG CCTTTGTTTGTTGTTTTGTTAGACATGTCATTAGCGGATTCGCTTGCTGT TTCGTGTGCCGTTTCCTTTTTCTGTGTCGTTTGACAGTTTGCTCTGTCGT TTTGTCCGTCTTGCACGAGCGCTTTTTCCTCCTTTTTTCTTCTGGCCCTG CGGCGTTGTCGCTGCTTCAGAAAGCCTTCTTTTCTCAACTGGAGTGGGTT GTTGTGCTGCCGTCAGCCAGCCGCTAACGTTCACGTCTGCTCCCGCTTTG CTGGTATTCACCTTCAACAATATTCCTCTTCTTCCTTCTGTTGCTCCTCT CTCCTTCCCTCTTCAATCTCAGGCGCGTTGAGCGCACGCTGGTGTTCTGC AACACGGTGAAGAGCTGCCAGGCGGTGGAGCACGCCGTGCGCGAGGCGGG CCTTGACTGCCGCCCGTACCATGGCGAGGTGCCCAGCATCGACCGCGCCG AGAACCTCCGACGCTTCAAGGTGAAGCACAAGGGGGCACAAAGAAAAGAG TTGCGGGGCCGAACGAGGATGGGATAGAAGAAGGGACTGGAGATGCGAGG CAATTGCTGTTTATGGCGGTGGCGATTCTTGTCCGTTTGTCGGCCTGTTT TCTGCTTTCTGCAAATTATAAGAGAAGTCTGTTATCGGCATGCTGGTGCA AGATCGCTCGGCGATGCCGCTCTTGCGGCTCGTCCGTACCATTTGTTTTA TGCACCTCCACTTTCTCCCCATTCCTTGCAGCTGGGCGAGGTGCGGCACC TCGTGGCGACGGACATCGCCGCCCGCGGCCTCGACATGCCCAACGTGGCC CACGTCATCAACTTCGACTTCCCCCTCAATCCAATAGACTACCTCCACCG GTCGGGCCGTACGGCCCGCATGGGCGCCACGACGGGCGTGGCGGCGCAGG GGCGCGTCACGTCGCTGCTGGCGAAGCGGGATCGTGTGCTCGCGACGGCG ATTGAAAAGGCAGTGCTGTCGGGCGGCCGGCTGGACGAATTGTCGTCGCG AAGGGAGGACTACCTGGAGCCGGGGCAGCGGCTGGCGATGCCGCAGCGGC CACGGCGGGCGCTGGCGGCGCCAGCCAGGGCCGGCCGCGGGGGCGCTGGC CGCAGCGGCGACGCTGGCGGACGCAGTGATGGTGGTGGCCGCAGTGGCAG TAGTGGCCGTAATGGCAGTGGTGGCGGTTATGGTGGCGGTTATGGTCGCA GCGGCGGCGATGAGGGCGGGCGCAGCGGCGGCGGCGGCGGTTACGGGAGG GGACGAGTGCAAGTCGATGGAGCGACGGCACGCAGCGCTGGCGGCGGCGG CACGAGCGGCGCATGGGGGCGACGCGGCGGCGATGCAGGGTCACCGGTGA GTCGAAGGGATAACATGGCTGCGGTTTTATCGTTTTATCCCTCGGTGGCT CAAATCGGTCAGCTGCGGTTGTTCTTTCATGGTCGAGTCAGCGTGCAAGC ATTCTTGACCACCCGCCTTGTTCGTAATTGCGTGCCCCCTTTGCCTTCTG TTAACAGCCCTCGTCAGGGCCGAGCCGACCAGACGGCCGTCCGCGTGTGA GACCCGGCGGGTCGGAAAGGCCAGGCGGCGGCGAGAGCGGTGGGAGATTC GGCCGAAGGGATAGCTGGCTGCGCGACGGCGACGGCGGCGGCGGCAGGGG CGGCGGCGGCAGGGGCGGCGGCGGCAGGGGCGGCGGCGGCAGGGGCGGCG GCAGAAGTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8513:2..2762+

>mRNA_P-wetherbeei_contig8513.1.2 ID=mRNA_P-wetherbeei_contig8513.1.2|Name=mRNA_P-wetherbeei_contig8513.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1242bp|location=Sequence derived from alignment at P-wetherbeei_contig8513:2..2762+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGATGCAGGGTTTCGGCCCCGACATTAAAAAGCTCGTCGGTCCCGT
CCTCGGCAGTGTAGAGCGGAAAAACTCCGTCCAATTCATCTTCGTGACGG
CGACGCTCACAAAGGCGGTCCGGCAGCTGCTGGAAGATGGGGACTACCCC
AAGGTGCGGACAGTGGAGACGCGCGACGTGCACAAGGGCCTCCCTAGCAT
GAAGCACGCCATGGTGGACACCAAGGGCCGCGACAAGCTCGCCTCGCTGC
TCGACGTTCTCCACCAGAACCAGGGGCGCGTTGAGCGCACGCTGGTGTTC
TGCAACACGGTGAAGAGCTGCCAGGCGGTGGAGCACGCCGTGCGCGAGGC
GGGCCTTGACTGCCGCCCGTACCATGGCGAGGTGCCCAGCATCGACCGCG
CCGAGAACCTCCGACGCTTCAAGCTGGGCGAGGTGCGGCACCTCGTGGCG
ACGGACATCGCCGCCCGCGGCCTCGACATGCCCAACGTGGCCCACGTCAT
CAACTTCGACTTCCCCCTCAATCCAATAGACTACCTCCACCGGTCGGGCC
GTACGGCCCGCATGGGCGCCACGACGGGCGTGGCGGCGCAGGGGCGCGTC
ACGTCGCTGCTGGCGAAGCGGGATCGTGTGCTCGCGACGGCGATTGAAAA
GGCAGTGCTGTCGGGCGGCCGGCTGGACGAATTGTCGTCGCGAAGGGAGG
ACTACCTGGAGCCGGGGCAGCGGCTGGCGATGCCGCAGCGGCCACGGCGG
GCGCTGGCGGCGCCAGCCAGGGCCGGCCGCGGGGGCGCTGGCCGCAGCGG
CGACGCTGGCGGACGCAGTGATGGTGGTGGCCGCAGTGGCAGTAGTGGCC
GTAATGGCAGTGGTGGCGGTTATGGTGGCGGTTATGGTCGCAGCGGCGGC
GATGAGGGCGGGCGCAGCGGCGGCGGCGGCGGTTACGGGAGGGGACGAGT
GCAAGTCGATGGAGCGACGGCACGCAGCGCTGGCGGCGGCGGCACGAGCG
GCGCATGGGGGCGACGCGGCGGCGATGCAGGGTCACCGCCCTCGTCAGGG
CCGAGCCGACCAGACGGCCGTCCGCGTGTGAGACCCGGCGGGTCGGAAAG
GCCAGGCGGCGGCGAGAGCGGTGGGAGATTCGGCCGAAGGGATAGCTGGC
TGCGCGACGGCGACGGCGGCGGCGGCAGGGGCGGCGGCGGCAGGGGCGGC
GGCGGCAGGGGCGGCGGCGGCAGGGGCGGCGGCAGAAGTGGC
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