mRNA_P-wetherbeei_contig8510.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8510.2.1
Unique NamemRNA_P-wetherbeei_contig8510.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.500e-30
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEEV 222
            ME LNRIQSKM +AALL  ENLLLCAPTGAGKTNVA++ MLHEIGQ R++DGTID+D+FK+VYVAPMK LV+EV
Sbjct:  525 MEKLNRIQSKMQEAALLSPENLLLCAPTGAGKTNVALMTMLHEIGQHRKEDGTIDVDSFKIVYVAPMKALVQEV 598
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 116 bits (290), Expect = 1.460e-28
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M  LNR+QSKMC +AL  SENLLLCAPTGAGKTNVAML +L+EIGQ  R+DG++DLDAFK+VYVAPMK LV+E
Sbjct:   72 MTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 144
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: W7TFU8_9STRA (U5 small nuclear ribonucleoprotein helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFU8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.460e-28
Identity = 55/73 (75.34%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M  LNR+QSKMC +AL  SENLLLCAPTGAGKTNVAML +L+EIGQ  R+DG++DLDAFK+VYVAPMK LV+E
Sbjct:  511 MTMLNRVQSKMCSSALYSSENLLLCAPTGAGKTNVAMLCILNEIGQHLREDGSVDLDAFKIVYVAPMKALVQE 583
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: A0A2P6V4J1_9CHLO (U5 small nuclear ribonucleo 200 kDa helicase-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4J1_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 5.070e-28
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M+ LNRIQS++CD AL  SEN+L+CAPTGAGKTNVAML MLHEIG  RRDDG+ID  AFK++YVAPMK LV E
Sbjct:  488 MKALNRIQSRVCDCALYSSENMLVCAPTGAGKTNVAMLTMLHEIGLHRRDDGSIDTAAFKIIYVAPMKALVAE 560
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: E1Z6L6_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z6L6_CHLVA)

HSP 1 Score: 114 bits (284), Expect = 9.410e-28
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M++LNRIQS++CD AL  +EN+L+CAPTGAGKTNVAMLAMLHEIG  RR+DG+ID  AFK++YVAPMK LV E
Sbjct:  241 MKSLNRIQSRVCDTALYSAENMLVCAPTGAGKTNVAMLAMLHEIGLHRREDGSIDTAAFKIIYVAPMKALVAE 313
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: A0A7S3Y2E0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E0_HETAK)

HSP 1 Score: 107 bits (267), Expect = 4.440e-27
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEEV 222
            M TLNR+QSKM  AA     NLLLCAPTGAGKTNVAML ML+ +GQ  +DDG++DLDAFK+VYVAPMK LV+EV
Sbjct:   78 MATLNRVQSKMYKAAFEDQGNLLLCAPTGAGKTNVAMLCMLNLLGQHLKDDGSVDLDAFKIVYVAPMKALVQEV 151
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: A0A7J7Q1B8_9CHLO (RNA helicase, activating signal cointegrator 1 n=3 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7Q1B8_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 4.470e-27
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M++LNR+QS++CD AL  SEN+L+CAPTGAGKTNVAML +LHE+G  RR DG+ID+ AFKVVYVAPMK LV E
Sbjct:  481 MQSLNRVQSRVCDTALYSSENMLVCAPTGAGKTNVAMLCILHELGLHRRTDGSIDMAAFKVVYVAPMKALVAE 553
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BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: A0A176VG96_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VG96_MARPO)

HSP 1 Score: 111 bits (278), Expect = 6.110e-27
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M TLNR+QSK+ + AL   ENLLLCAPTGAGKTNVAMLA+LHEIG +RR+DG+IDL+ FK+VYVAPMK LV E
Sbjct:  504 MTTLNRVQSKVYETALFTHENLLLCAPTGAGKTNVAMLAILHEIGLKRREDGSIDLNGFKIVYVAPMKALVAE 576
[Close]
BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: A0A2P6TQ19_CHLSO (U5 small nuclear ribonucleo 200 kDa helicase-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TQ19_CHLSO)

HSP 1 Score: 110 bits (276), Expect = 1.140e-26
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M+ LNRIQS++C+ AL  SEN+L+CAPTGAGKTNVAML +LHEIG  RR+DG+ID  AFK++YVAPMK LV E
Sbjct:  488 MKALNRIQSRVCECALYSSENMLVCAPTGAGKTNVAMLTILHEIGLHRREDGSIDTSAFKIIYVAPMKALVAE 560
[Close]
BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Match: R1DUR0_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DUR0_EMIHU)

HSP 1 Score: 110 bits (274), Expect = 2.120e-26
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRDDGTIDLDAFKVVYVAPMKTLVEE 219
            M +LNR+QS++ D AL  +EN+LLCAPTGAGKTNVAML +LHEIG  R+ DG+ DLDAFK+VYVAPMK LV+E
Sbjct:  496 MSSLNRVQSRVYDCALFSAENMLLCAPTGAGKTNVAMLTLLHEIGLHRQPDGSFDLDAFKIVYVAPMKALVQE 568
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8510.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI3.500e-3078.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8YVZ6_NANGC1.460e-2875.34Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
W7TFU8_9STRA1.460e-2875.34U5 small nuclear ribonucleoprotein helicase n=3 Ta... [more]
A0A2P6V4J1_9CHLO5.070e-2873.97U5 small nuclear ribonucleo 200 kDa helicase-like ... [more]
E1Z6L6_CHLVA9.410e-2872.60Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S3Y2E0_HETAK4.440e-2771.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7J7Q1B8_9CHLO4.470e-2771.23RNA helicase, activating signal cointegrator 1 n=3... [more]
A0A176VG96_MARPO6.110e-2773.97Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A2P6TQ19_CHLSO1.140e-2669.86U5 small nuclear ribonucleo 200 kDa helicase-like ... [more]
R1DUR0_EMIHU2.120e-2669.86Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8510contigP-wetherbeei_contig8510:2553..2774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHW4
Preferred namebrr2
PFAMsDEAD,Helicase_C,Sec63
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
Exons1
Evalue5.74e-31
EggNOG OGsCOG1204@1|root,KOG0951@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size222
COG categoryB
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187044.2299197-CDS-P-wetherbeei_contig8510:2552..27741683187044.2299197-CDS-P-wetherbeei_contig8510:2552..2774Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8510 2553..2774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8510.2.1prot_P-wetherbeei_contig8510.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8510 2553..2774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8510.2.1

>prot_P-wetherbeei_contig8510.2.1 ID=prot_P-wetherbeei_contig8510.2.1|Name=mRNA_P-wetherbeei_contig8510.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
METLNRIQSKMCDAALLGSENLLLCAPTGAGKTNVAMLAMLHEIGQRRRD
DGTIDLDAFKVVYVAPMKTLVEEV
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mRNA from alignment at P-wetherbeei_contig8510:2553..2774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8510.2.1 ID=mRNA_P-wetherbeei_contig8510.2.1|Name=mRNA_P-wetherbeei_contig8510.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig8510:2553..2774+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGACGCTCAACCGCATACAGAGCAAGATGTGTGACGCGGCGCTCCT
GGGCTCCGAAAACCTGCTGCTGTGCGCGCCGACGGGCGCCGGCAAGACTA
ACGTGGCGATGCTGGCGATGCTGCACGAGATCGGGCAGCGGCGGCGCGAC
GACGGCACCATCGACCTCGACGCGTTCAAGGTTGTCTATGTGGCGCCCAT
GAAGACGCTGGTGGAGGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8510:2553..2774+

>mRNA_P-wetherbeei_contig8510.2.1 ID=mRNA_P-wetherbeei_contig8510.2.1|Name=mRNA_P-wetherbeei_contig8510.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig8510:2553..2774+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGACGCTCAACCGCATACAGAGCAAGATGTGTGACGCGGCGCTCCT
GGGCTCCGAAAACCTGCTGCTGTGCGCGCCGACGGGCGCCGGCAAGACTA
ACGTGGCGATGCTGGCGATGCTGCACGAGATCGGGCAGCGGCGGCGCGAC
GACGGCACCATCGACCTCGACGCGTTCAAGGTTGTCTATGTGGCGCCCAT
GAAGACGCTGGTGGAGGAGGTG
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