mRNA_P-wetherbeei_contig8502.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8502.1.1
Unique NamemRNA_P-wetherbeei_contig8502.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8502.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8502contigP-wetherbeei_contig8502:130..1187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1059
Hectar predicted targeting categoryother localisation
Exons1
Cds size972
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187043.8075051-UTR-P-wetherbeei_contig8502:129..2151683187043.8075051-UTR-P-wetherbeei_contig8502:129..215Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8502 130..215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187043.8165689-CDS-P-wetherbeei_contig8502:215..11871683187043.8165689-CDS-P-wetherbeei_contig8502:215..1187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8502 216..1187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8502.1.1prot_P-wetherbeei_contig8502.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8502 216..1187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8502.1.1

>prot_P-wetherbeei_contig8502.1.1 ID=prot_P-wetherbeei_contig8502.1.1|Name=mRNA_P-wetherbeei_contig8502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=324bp
LCVARAVGASSYGGGNPPPPPGSRPPPRKSGEAEQSEDPSLPPPAGDGDA
SGAAGVPERPESTWPPQNGQNGRPGGQPGGYFGSNEAPSREGGGGAAGQQ
YYNGGLPQGWGAFPQQYDYGQYRQTPPRPPPPQSNEVQYDSSRQGDYPPP
PPPPPPPPSQQQQQQQQQYQPHRQQQYQPQQPPLPPPPPLPPQGIGSFGS
VPPPASLAGAITPRATVTNYGQQPAGFGQAPGPGDGGGGGGGGPGELEED
LGIQLHNVDKEMVFENLKKLYRKKILPLEVINMGGEWGSEVFFFSHVFRI
LQLLPGASCLSFSPVVLVLQTRR*
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mRNA from alignment at P-wetherbeei_contig8502:130..1187-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8502.1.1 ID=mRNA_P-wetherbeei_contig8502.1.1|Name=mRNA_P-wetherbeei_contig8502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig8502:130..1187- (Phaeothamnion wetherbeei SAG_119_79)
CTATGCGTTGCCCGGGCCGTCGGTGCCTCGTCGTACGGTGGCGGAAACCC
GCCGCCGCCGCCGGGAAGTCGGCCGCCGCCGCGCAAGAGCGGTGAGGCCG
AGCAATCTGAGGACCCATCCTTGCCTCCTCCAGCCGGCGATGGCGACGCG
AGCGGAGCTGCCGGAGTTCCAGAGCGACCGGAGAGCACCTGGCCGCCGCA
AAACGGGCAAAACGGCCGACCAGGCGGCCAGCCAGGTGGCTACTTTGGCA
GCAACGAAGCACCGTCAAGAGAAGGTGGAGGTGGCGCCGCCGGCCAGCAG
TACTACAACGGCGGGCTGCCACAGGGCTGGGGTGCGTTTCCACAACAGTA
CGATTACGGCCAGTACCGGCAGACGCCTCCGAGACCGCCGCCGCCACAAT
CCAACGAGGTGCAGTATGACAGCAGCAGACAAGGCGACTACCCGCCGCCA
CCGCCGCCTCCGCCGCCACCGCCGTCGCAGCAGCAGCAGCAACAGCAGCA
GCAATATCAGCCACATCGGCAGCAGCAATACCAGCCACAGCAGCCACCGC
TCCCGCCCCCTCCGCCGCTGCCACCACAAGGCATCGGCTCGTTTGGCAGC
GTGCCGCCGCCGGCGTCCCTCGCCGGAGCCATAACGCCTCGGGCCACGGT
TACGAACTACGGGCAGCAACCTGCCGGTTTTGGGCAGGCCCCCGGGCCGG
GCGATGGCGGTGGCGGCGGTGGCGGAGGGCCGGGCGAGTTGGAGGAGGAT
TTGGGCATTCAGTTGCACAACGTCGACAAGGAAATGGTGTTTGAGAACCT
GAAGAAGCTCTACCGGAAGAAGATTTTGCCGCTCGAGGTGATAAATATGG
GTGGAGAATGGGGAAGCGAGGTGTTCTTCTTTTCCCATGTTTTCCGAATC
CTGCAACTGCTTCCTGGCGCGTCGTGTCTTTCTTTTTCGCCTGTAGTTCT
GGTCTTACAAACAAGACGTTAGTCTAACCAACAAGGTCTTCCATCGGCGG
TGAACATGCTACACCGGCCGCAATGTTTGCTGGAAGAGCGTGTTCCAGAC
GAGTCCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8502:130..1187-

>mRNA_P-wetherbeei_contig8502.1.1 ID=mRNA_P-wetherbeei_contig8502.1.1|Name=mRNA_P-wetherbeei_contig8502.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=972bp|location=Sequence derived from alignment at P-wetherbeei_contig8502:130..1187- (Phaeothamnion wetherbeei SAG_119_79)
CTATGCGTTGCCCGGGCCGTCGGTGCCTCGTCGTACGGTGGCGGAAACCC
GCCGCCGCCGCCGGGAAGTCGGCCGCCGCCGCGCAAGAGCGGTGAGGCCG
AGCAATCTGAGGACCCATCCTTGCCTCCTCCAGCCGGCGATGGCGACGCG
AGCGGAGCTGCCGGAGTTCCAGAGCGACCGGAGAGCACCTGGCCGCCGCA
AAACGGGCAAAACGGCCGACCAGGCGGCCAGCCAGGTGGCTACTTTGGCA
GCAACGAAGCACCGTCAAGAGAAGGTGGAGGTGGCGCCGCCGGCCAGCAG
TACTACAACGGCGGGCTGCCACAGGGCTGGGGTGCGTTTCCACAACAGTA
CGATTACGGCCAGTACCGGCAGACGCCTCCGAGACCGCCGCCGCCACAAT
CCAACGAGGTGCAGTATGACAGCAGCAGACAAGGCGACTACCCGCCGCCA
CCGCCGCCTCCGCCGCCACCGCCGTCGCAGCAGCAGCAGCAACAGCAGCA
GCAATATCAGCCACATCGGCAGCAGCAATACCAGCCACAGCAGCCACCGC
TCCCGCCCCCTCCGCCGCTGCCACCACAAGGCATCGGCTCGTTTGGCAGC
GTGCCGCCGCCGGCGTCCCTCGCCGGAGCCATAACGCCTCGGGCCACGGT
TACGAACTACGGGCAGCAACCTGCCGGTTTTGGGCAGGCCCCCGGGCCGG
GCGATGGCGGTGGCGGCGGTGGCGGAGGGCCGGGCGAGTTGGAGGAGGAT
TTGGGCATTCAGTTGCACAACGTCGACAAGGAAATGGTGTTTGAGAACCT
GAAGAAGCTCTACCGGAAGAAGATTTTGCCGCTCGAGGTGATAAATATGG
GTGGAGAATGGGGAAGCGAGGTGTTCTTCTTTTCCCATGTTTTCCGAATC
CTGCAACTGCTTCCTGGCGCGTCGTGTCTTTCTTTTTCGCCTGTAGTTCT
GGTCTTACAAACAAGACGTTAG
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