mRNA_P-wetherbeei_contig8475.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8475.1.1
Unique NamemRNA_P-wetherbeei_contig8475.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8475contigP-wetherbeei_contig8475:329..2789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2237
Hectar predicted targeting categorysignal peptide
Exons2
Cds size2166
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.4551597-UTR-P-wetherbeei_contig8475:328..3441683187042.4551597-UTR-P-wetherbeei_contig8475:328..344Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8475 329..344 -
1683187042.4819129-UTR-P-wetherbeei_contig8475:2734..27891683187042.4819129-UTR-P-wetherbeei_contig8475:2734..2789Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8475 2735..2789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.4659088-CDS-P-wetherbeei_contig8475:344..6871683187042.4659088-CDS-P-wetherbeei_contig8475:344..687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8475 345..687 -
1683187042.4738982-CDS-P-wetherbeei_contig8475:911..27341683187042.4738982-CDS-P-wetherbeei_contig8475:911..2734Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8475 912..2734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8475.1.1prot_P-wetherbeei_contig8475.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8475 345..2734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8475.1.1

>prot_P-wetherbeei_contig8475.1.1 ID=prot_P-wetherbeei_contig8475.1.1|Name=mRNA_P-wetherbeei_contig8475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=722bp
MAALTDALILLDGFARAAASARASALKATLASPEAALRQRFLDRDGGFGI
PGFGGGGSGGGGGGFAANGTAAAVLLEELFDQYAVTVRGLSAQAAALLPW
LVPRDDQSPTARALSEAVEAQLAALASNYRAGSIVFYNSPAAAVGPIPAD
FRFRLPVGNADFDDVATALAAAAGRSGEAGRSDGAGGDRRRRGGDSDAPF
RGDDGGGDDGGGGRRKTDERQRHFGRWLQLNRVADLLRRTMAAVLEVAAG
ESESRRVASGKRDAFGGGDADRMQRRRRSSAQRRRHRWRRMVTLSCLARR
GAGALPRLPPLPPALSPAVLARQRCGSTHGAPAAENGGAGLPPSDGGDSP
LQSGRRAALRRGLTAMLAEVKHMRAELKELLPAPLSNVAAKASCSGRPSA
AATGTGTAEAAVGVAAAAVVVADATSPPSPDTARLRLVARLLALVWRAAE
TVPEGVSMLQDDNIGNGSGNGGTGATDQAEGSLHVGSGVSFTAGKAGFNA
LGDSGVGSSGESKTMGSTTNAASMTAMAERQRIGQKELQTGGAGGGAAAA
EAQWRAVLSVLKAAVATGRHSRVNHALLLHSCLLLALAPYNLKLVEPPLP
WGDGWGTRPSAALSAASAGATAAAGGSLSMRLGVDAGGDGERAAYELLFR
KALGLGAEEGLEVHRLRIDGGFVACSWRPAFTEIVKAEMNGEVGLLYLRC
DGIVCLRLFVLFRVMCFFFFS*
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mRNA from alignment at P-wetherbeei_contig8475:329..2789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8475.1.1 ID=mRNA_P-wetherbeei_contig8475.1.1|Name=mRNA_P-wetherbeei_contig8475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2461bp|location=Sequence derived from alignment at P-wetherbeei_contig8475:329..2789- (Phaeothamnion wetherbeei SAG_119_79)
CAGTGACGCTGGCAGCACTGGCTTTGCCGGAAGCGGGAACGGGAACGGCG
TTGTAATGGCGGCCCTTACAGACGCCCTGATCCTCCTCGACGGGTTCGCC
CGCGCCGCCGCCAGCGCCCGCGCGTCTGCGCTGAAAGCGACACTTGCGTC
GCCCGAGGCGGCGCTCCGCCAACGATTCCTTGACCGAGATGGCGGATTTG
GCATTCCCGGCTTCGGTGGCGGCGGCAGTGGCGGCGGCGGTGGCGGCTTT
GCTGCGAACGGCACCGCTGCCGCCGTACTGTTGGAGGAGCTGTTTGATCA
GTACGCCGTCACCGTCCGGGGCCTCAGCGCCCAGGCCGCCGCGTTGCTGC
CGTGGCTGGTGCCACGGGATGACCAGAGCCCCACAGCGCGGGCACTCTCA
GAGGCGGTGGAGGCGCAGCTGGCGGCGCTGGCGAGCAACTACCGCGCCGG
GAGCATCGTCTTCTACAACTCGCCGGCGGCCGCGGTCGGGCCCATCCCCG
CCGACTTTCGATTCCGGCTTCCTGTGGGCAATGCTGATTTTGACGACGTC
GCGACGGCGCTCGCGGCGGCAGCGGGGAGGAGCGGTGAGGCGGGCAGGAG
CGATGGGGCGGGCGGCGATAGGAGGCGACGTGGTGGCGACAGCGACGCAC
CCTTCCGCGGTGATGACGGTGGTGGTGACGACGGCGGCGGTGGCCGCAGG
AAAACAGACGAAAGGCAGCGGCACTTCGGACGCTGGCTCCAGCTTAACCG
TGTGGCGGACCTCCTCCGTCGGACCATGGCGGCCGTTTTGGAAGTGGCTG
CGGGGGAGTCTGAGAGCCGACGGGTGGCCTCAGGCAAACGAGATGCGTTT
GGTGGTGGGGACGCAGATCGTATGCAACGGCGACGCCGCAGCAGCGCACA
GCGTCGGCGGCACCGCTGGCGTAGGATGGTGACTCTAAGCTGCCTTGCGC
GTCGAGGAGCTGGGGCCCTGCCGCGGCTCCCGCCGCTTCCGCCGGCACTC
AGCCCGGCAGTGCTCGCCCGTCAAAGATGCGGCAGCACCCACGGGGCACC
AGCTGCAGAAAATGGCGGCGCCGGTTTGCCACCGAGCGATGGCGGCGACA
GCCCCCTGCAGAGTGGGCGCCGTGCGGCGCTGCGCCGCGGTCTCACTGCT
ATGCTGGCTGAGGTGAAGCACATGCGGGCCGAGTTGAAAGAATTGCTCCC
GGCGCCTTTGTCAAATGTCGCGGCGAAAGCTTCCTGCAGCGGAAGGCCTT
CAGCGGCGGCAACCGGGACAGGGACCGCAGAAGCAGCGGTGGGCGTCGCA
GCGGCCGCGGTGGTGGTGGCAGACGCCACGTCGCCCCCGTCTCCGGATAC
GGCGCGATTGCGATTGGTTGCGCGGCTGCTTGCACTCGTCTGGCGCGCGG
CTGAGACGGTGCCAGAGGGTGTGTCAATGCTGCAGGATGACAATATCGGC
AACGGAAGTGGCAACGGGGGAACTGGCGCGACCGACCAGGCTGAAGGGAG
CCTTCACGTGGGAAGCGGCGTCAGCTTTACCGCCGGAAAAGCCGGGTTCA
ACGCTCTCGGCGACTCAGGTGTCGGAAGCTCTGGTGAGTCAAAAACCATG
GGCAGCACGACCAACGCAGCCTCGATGACAGCCATGGCAGAGCGACAACG
CATCGGACAGAAGGAGCTACAAACCGGTGGCGCAGGCGGTGGCGCTGCCG
CCGCGGAAGCGCAGTGGCGGGCCGTGCTCTCGGTGCTGAAGGCGGCGGTG
GCGACGGGGCGGCACAGCCGGGTCAACCACGCCCTCCTGCTGCACTCCTG
CCTGCTGCTGGCGCTGGCGCCTTACAACTTGAAGCTTGTGGAGCCGCCGC
TGCCGTGGGGTGACGGCTGGGGAACGAGGTAACATCTGATTGTTCTCGTC
TTGTGTGTGAACCAATGGCTTGTGACCAGTTTTTGGCCCGTGAGGGCTCT
TCGAACGCAGCGCTCTCTGGCCGTACAGGAACCCATGACGACTGGATCGT
CGACAGAGAGGGTTCAGGCTCTTTCCTGTTTCTCTCCTTTCCCTACCTCC
TGTGGCGATGCTGTCAAAACTTCTCGTTATCCGCGCCTGAACCTTCTAAC
AGGCCGTCAGCAGCGCTGTCGGCAGCCTCTGCTGGCGCGACGGCGGCGGC
AGGTGGGTCATTGTCCATGCGGCTCGGGGTGGACGCCGGCGGTGACGGCG
AGCGGGCGGCATACGAGCTGCTCTTCCGCAAGGCGCTCGGCCTCGGCGCC
GAGGAAGGCCTCGAAGTCCACAGGTTGAGGATCGATGGAGGTTTTGTTGC
TTGCAGTTGGAGGCCGGCGTTTACCGAGATCGTGAAGGCGGAAATGAATG
GAGAAGTAGGGCTGCTGTATTTGCGATGTGATGGTATCGTGTGCTTACGA
CTTTTTGTCCTGTTTCGTGTCATGTGTTTTTTCTTCTTTTCTTAGGCACC
CGCCCCGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8475:329..2789-

>mRNA_P-wetherbeei_contig8475.1.1 ID=mRNA_P-wetherbeei_contig8475.1.1|Name=mRNA_P-wetherbeei_contig8475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2166bp|location=Sequence derived from alignment at P-wetherbeei_contig8475:329..2789- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCCCTTACAGACGCCCTGATCCTCCTCGACGGGTTCGCCCGCGC
CGCCGCCAGCGCCCGCGCGTCTGCGCTGAAAGCGACACTTGCGTCGCCCG
AGGCGGCGCTCCGCCAACGATTCCTTGACCGAGATGGCGGATTTGGCATT
CCCGGCTTCGGTGGCGGCGGCAGTGGCGGCGGCGGTGGCGGCTTTGCTGC
GAACGGCACCGCTGCCGCCGTACTGTTGGAGGAGCTGTTTGATCAGTACG
CCGTCACCGTCCGGGGCCTCAGCGCCCAGGCCGCCGCGTTGCTGCCGTGG
CTGGTGCCACGGGATGACCAGAGCCCCACAGCGCGGGCACTCTCAGAGGC
GGTGGAGGCGCAGCTGGCGGCGCTGGCGAGCAACTACCGCGCCGGGAGCA
TCGTCTTCTACAACTCGCCGGCGGCCGCGGTCGGGCCCATCCCCGCCGAC
TTTCGATTCCGGCTTCCTGTGGGCAATGCTGATTTTGACGACGTCGCGAC
GGCGCTCGCGGCGGCAGCGGGGAGGAGCGGTGAGGCGGGCAGGAGCGATG
GGGCGGGCGGCGATAGGAGGCGACGTGGTGGCGACAGCGACGCACCCTTC
CGCGGTGATGACGGTGGTGGTGACGACGGCGGCGGTGGCCGCAGGAAAAC
AGACGAAAGGCAGCGGCACTTCGGACGCTGGCTCCAGCTTAACCGTGTGG
CGGACCTCCTCCGTCGGACCATGGCGGCCGTTTTGGAAGTGGCTGCGGGG
GAGTCTGAGAGCCGACGGGTGGCCTCAGGCAAACGAGATGCGTTTGGTGG
TGGGGACGCAGATCGTATGCAACGGCGACGCCGCAGCAGCGCACAGCGTC
GGCGGCACCGCTGGCGTAGGATGGTGACTCTAAGCTGCCTTGCGCGTCGA
GGAGCTGGGGCCCTGCCGCGGCTCCCGCCGCTTCCGCCGGCACTCAGCCC
GGCAGTGCTCGCCCGTCAAAGATGCGGCAGCACCCACGGGGCACCAGCTG
CAGAAAATGGCGGCGCCGGTTTGCCACCGAGCGATGGCGGCGACAGCCCC
CTGCAGAGTGGGCGCCGTGCGGCGCTGCGCCGCGGTCTCACTGCTATGCT
GGCTGAGGTGAAGCACATGCGGGCCGAGTTGAAAGAATTGCTCCCGGCGC
CTTTGTCAAATGTCGCGGCGAAAGCTTCCTGCAGCGGAAGGCCTTCAGCG
GCGGCAACCGGGACAGGGACCGCAGAAGCAGCGGTGGGCGTCGCAGCGGC
CGCGGTGGTGGTGGCAGACGCCACGTCGCCCCCGTCTCCGGATACGGCGC
GATTGCGATTGGTTGCGCGGCTGCTTGCACTCGTCTGGCGCGCGGCTGAG
ACGGTGCCAGAGGGTGTGTCAATGCTGCAGGATGACAATATCGGCAACGG
AAGTGGCAACGGGGGAACTGGCGCGACCGACCAGGCTGAAGGGAGCCTTC
ACGTGGGAAGCGGCGTCAGCTTTACCGCCGGAAAAGCCGGGTTCAACGCT
CTCGGCGACTCAGGTGTCGGAAGCTCTGGTGAGTCAAAAACCATGGGCAG
CACGACCAACGCAGCCTCGATGACAGCCATGGCAGAGCGACAACGCATCG
GACAGAAGGAGCTACAAACCGGTGGCGCAGGCGGTGGCGCTGCCGCCGCG
GAAGCGCAGTGGCGGGCCGTGCTCTCGGTGCTGAAGGCGGCGGTGGCGAC
GGGGCGGCACAGCCGGGTCAACCACGCCCTCCTGCTGCACTCCTGCCTGC
TGCTGGCGCTGGCGCCTTACAACTTGAAGCTTGTGGAGCCGCCGCTGCCG
TGGGGTGACGGCTGGGGAACGAGGCCGTCAGCAGCGCTGTCGGCAGCCTC
TGCTGGCGCGACGGCGGCGGCAGGTGGGTCATTGTCCATGCGGCTCGGGG
TGGACGCCGGCGGTGACGGCGAGCGGGCGGCATACGAGCTGCTCTTCCGC
AAGGCGCTCGGCCTCGGCGCCGAGGAAGGCCTCGAAGTCCACAGGTTGAG
GATCGATGGAGGTTTTGTTGCTTGCAGTTGGAGGCCGGCGTTTACCGAGA
TCGTGAAGGCGGAAATGAATGGAGAAGTAGGGCTGCTGTATTTGCGATGT
GATGGTATCGTGTGCTTACGACTTTTTGTCCTGTTTCGTGTCATGTGTTT
TTTCTTCTTTTCTTAG
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