mRNA_P-wetherbeei_contig8474.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8474.2.1
Unique NamemRNA_P-wetherbeei_contig8474.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: D8LMR4_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.080e-29
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGGCCD 261
            +EHAG  GR +I +V+ VSQDNYPEMME CY++N PWVF+ALWKG++PLMSA T +KV +L Y  ++ L+  + L+RLP   GG CD
Sbjct:  341 MEHAGTIGRSLISQVLAVSQDNYPEMMEKCYIINAPWVFYALWKGLQPLMSAGTAKKVQMLKYDVLSCLSETISLERLPTSAGGACD 427          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.880e-29
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGGCCD 261
            +EHAG  GR +I +V+ VSQDNYPEMME CY++N PWVF+ALWKG++PLMSA T  KV +L Y  ++ L+  + L+RLP   GG CD
Sbjct:  423 MEHAGTIGRSLISQVLAVSQDNYPEMMEKCYIINAPWVFYALWKGLQPLMSAGTANKVQMLKYDVLSSLSETISLERLPTSAGGVCD 509          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A7S3USY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USY2_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-21
Identity = 44/84 (52.38%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGG 252
            LEHA   GREI+R VM V+  NYPEMM  C +VN PWVFF LW+ +KP++S ++  KV VL Y YM  L   V   ++PV +GG
Sbjct:   16 LEHAQARGREILRVVMAVTTANYPEMMHRCIIVNAPWVFFTLWRVIKPMLSEHSANKVKVLDYNYMEELKKYVDQKKMPVFLGG 99          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A835YKX5_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.390e-20
Identity = 35/61 (57.38%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVL 183
            +EHAGP+ R+++ +VM VS  NYPE+M+ C++VN PW+FFA++KG+KPLMSA+TV KV ++
Sbjct:    7 MEHAGPSARDLMGRVMSVSCANYPELMDTCFLVNAPWIFFAVFKGVKPLMSAHTVAKVKLV 67          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A7S3GTP2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTP2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.830e-14
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    7 HAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGG 252
            H    G+EII+ V+ V+ DNYPE+M  C+M+N P++F A W  +K  +S  T+ KV ++G  YM  L   +   +LP  VGG
Sbjct:  200 HLSAQGQEIIKAVIAVASDNYPELMRKCFMINAPFLFNAAWYVIKGFLSPRTLAKVSLMGGNYMNELLQDIDKSQLPAMVGG 281          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A7S3M0V6_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0V6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.570e-14
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query:    7 HAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGG 252
            H    G+EII+ V+ V+ DNYPE+M  C+M+N P++F A W  +K  +S  T+ KV ++G  YM  L   +   +LP  VGG
Sbjct:  200 HLSAQGQEIIKAVIAVASDNYPELMRKCFMINAPFLFNAAWYVIKGFLSPRTLAKVSLMGGNYMNELLQDIDKSQLPAMVGG 281          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: UPI001B88A386 (SEC14-like protein 2 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88A386)

HSP 1 Score: 66.2 bits (160), Expect = 8.800e-11
Identity = 28/84 (33.33%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGG 252
            L+H    G +++ +V+ + +D YPE ++  Y++N P +F   +  ++P++S +TVRK+HVLG  Y   L   +  D++P   GG
Sbjct:  159 LKHLWKPGVDVLLEVLAMFEDYYPETLKVSYVINAPRIFPIAYSLVRPILSEDTVRKIHVLGSNYKDTLLKYIDEDQIPAHWGG 242          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A7S3E3P0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E3P0_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 9.130e-11
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   31 IIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGG 252
            I++KV   +QDNYPEMM  C ++N P++F  ++  +KP++SA T  K+ V+G +Y   L        LP R+GG
Sbjct:  224 IMKKVTGFTQDNYPEMMGNCIIINAPYIFKVIFNIVKPMLSARTQSKIKVVGTRYHETLLEYADASCLPERLGG 297          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A2T7PD94_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PD94_POMCA)

HSP 1 Score: 65.5 bits (158), Expect = 1.640e-10
Identity = 26/84 (30.95%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGG 252
            ++H    G ++  +++++ + +YPE ++ C+++N P +F   +  +KP +S +T RK+HV+G QY   L   +  D+LP   GG
Sbjct:  159 MKHLWKPGVDVFIEIVQMFEAHYPETLKNCFVINAPKIFPVAFNIIKPFLSEDTARKIHVMGSQYKETLLKHIDADQLPEHWGG 242          
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Match: A0A7S3G6M9_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G6M9_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 2.950e-10
Identity = 31/86 (36.05%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLMSANTVRKVHVLGYQYMAVLTMAVPLDR--LPVRVGG 252
            ++HA P     I+K+    QDN+PE M+ CY++N P  F A WK ++P++S  T  KV VL   +  +    +P  R  +P  +GG
Sbjct:  170 MQHAAPNAISTIKKLFGPGQDNFPENMKVCYILNTPAFFAACWKLIEPMLSKRTREKVKVLRGDFSTMEDSELPCPRELIPEPIGG 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8474.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR4_ECTSI1.080e-2957.47CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JNT5_9PHAE3.880e-2957.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3USY2_HETAK1.060e-2152.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YKX5_9STRA3.390e-2057.38CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3GTP2_9STRA1.830e-1441.46Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S3M0V6_9STRA2.570e-1441.46Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
UPI001B88A3868.800e-1133.33SEC14-like protein 2 n=1 Tax=Gigantopelta aegis Ta... [more]
A0A7S3E3P0_9CHLO9.130e-1140.54Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A2T7PD94_POMCA1.640e-1030.95Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
A0A7S3G6M9_9EUKA2.950e-1036.05Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8474contigP-wetherbeei_contig8474:2530..2790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMR4
PFAMsCRAL_TRIO
Model size261
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.78e-30
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size261
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.4222434-CDS-P-wetherbeei_contig8474:2529..27901683187042.4222434-CDS-P-wetherbeei_contig8474:2529..2790Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8474 2530..2790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8474.2.1prot_P-wetherbeei_contig8474.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8474 2530..2790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8474.2.1

>prot_P-wetherbeei_contig8474.2.1 ID=prot_P-wetherbeei_contig8474.2.1|Name=mRNA_P-wetherbeei_contig8474.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
LEHAGPTGREIIRKVMEVSQDNYPEMMEACYMVNVPWVFFALWKGMKPLM
SANTVRKVHVLGYQYMAVLTMAVPLDRLPVRVGGCCD
back to top

mRNA from alignment at P-wetherbeei_contig8474:2530..2790-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8474.2.1 ID=mRNA_P-wetherbeei_contig8474.2.1|Name=mRNA_P-wetherbeei_contig8474.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig8474:2530..2790- (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGCACGCGGGGCCGACGGGCCGCGAGATTATCCGCAAGGTGATGGA GGTCAGTCAGGACAACTATCCCGAGATGATGGAGGCGTGTTACATGGTCA ACGTGCCGTGGGTCTTCTTCGCACTGTGGAAAGGTATGAAGCCACTCATG TCGGCCAACACCGTCCGCAAGGTGCACGTGCTGGGCTACCAGTACATGGC AGTGCTGACGATGGCCGTTCCGCTCGACCGGCTGCCGGTGCGCGTCGGGG GCTGTTGTGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8474:2530..2790-

>mRNA_P-wetherbeei_contig8474.2.1 ID=mRNA_P-wetherbeei_contig8474.2.1|Name=mRNA_P-wetherbeei_contig8474.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig8474:2530..2790- (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGCACGCGGGGCCGACGGGCCGCGAGATTATCCGCAAGGTGATGGA
GGTCAGTCAGGACAACTATCCCGAGATGATGGAGGCGTGTTACATGGTCA
ACGTGCCGTGGGTCTTCTTCGCACTGTGGAAAGGTATGAAGCCACTCATG
TCGGCCAACACCGTCCGCAAGGTGCACGTGCTGGGCTACCAGTACATGGC
AGTGCTGACGATGGCCGTTCCGCTCGACCGGCTGCCGGTGCGCGTCGGGG
GCTGTTGTGAC
back to top