mRNA_P-wetherbeei_contig8474.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8474.1.1
Unique NamemRNA_P-wetherbeei_contig8474.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: D8LMR5_ECTSI (Zinc finger, FYVE domain containing 28 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR5_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.190e-12
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   55 DWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSAHR 180
            +W+ NSAR+ CL C+R F+L+ R+HHCR+CGE+VCG CS HR
Sbjct:   33 EWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHR 74          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.670e-12
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   55 DWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSAHR 180
            +W+ NSAR+ CL C+R F+L+ R+HHCR+CGE+VCG CS HR
Sbjct:  837 EWIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGPCSPHR 878          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A397DHR0_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DHR0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.020e-12
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   28 LEITTESLRDWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSAHR 180
            L++  + + DWV +S R  C+LCDR FS   RKHHCR CGE++C  CS+HR
Sbjct:    4 LDVELKPVGDWVTDSKRRACVLCDRKFSTFVRKHHCRACGEVICKNCSSHR 54          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A3L6VMC4_9STRA (FYVE-type domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VMC4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.590e-12
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   28 LEITTESLRDWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSAHR 180
            L++  + + DWV++S R  C+LCDR FS   RKHHCR CGE++C  CS+HR
Sbjct:    4 LDVELKPVADWVNDSKRRACVLCDRKFSTFVRKHHCRACGEVICKNCSSHR 54          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A836C8R8_9STRA (FYVE zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 5.290e-11
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   49 LRDWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSAHRA 183
            L  W+ N+    C LC+R F++V R+HHCR+CGE+VC +CS HRA
Sbjct:    1 LGTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRA 45          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A397AVI5_9STRA (FYVE-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AVI5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.080e-10
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   55 DWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSA 174
            DWV ++AR  C +C + F ++ RKHHCR+CGEIVCG CS+
Sbjct:   20 DWVPDNARRDCYVCRKTFHVLRRKHHCRVCGEIVCGNCSS 59          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A024UGW9_9STRA (FYVE-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGW9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.390e-10
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   55 DWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCS 171
            +WV + AR  C +C + F+LV RKHHCR+CGEIVCG C+
Sbjct:   20 EWVPDKARHVCYICRKAFNLVRRKHHCRVCGEIVCGSCT 58          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: R1BV73_EMIHU (FYVE-type domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BV73_EMIHU)

HSP 1 Score: 58.2 bits (139), Expect = 4.680e-10
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   28 LEITTESLRDWVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCS 171
            L +T+E    WV N+ R  C +C + F L+ RKHHCR+CGE++CG CS
Sbjct:    4 LALTSEE-PGWVPNNERRGCNICQKKFGLLRRKHHCRLCGEVICGDCS 50          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: G4ZCM7_PHYSP (FYVE-type domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZCM7_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 7.270e-10
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   28 LEITTESLR--DWVDNSARDQCLLCDRVFS-LVSRKHHCRICGEIVCGRCSAHR 180
            + +  ESLR   WV N+ R +C++C R F+ L  R+HHCR+CGE++C  CS H+
Sbjct:    1 MSLHLESLRTLQWVRNAERTECVVCCRRFNQLTRRRHHCRLCGEVICRECSVHK 54          
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Match: A0A485L0Q8_9STRA (Aste57867_14238 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0Q8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.340e-10
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:   58 WVDNSARDQCLLCDRVFSLVSRKHHCRICGEIVCGRCSAHRA 183
            WV ++AR  C +C R F L   +HHCR CGE++CG+CS HRA
Sbjct:  279 WVPSTARTSCAVCGRSFGLFRHRHHCRACGEVICGKCSIHRA 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8474.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR5_ECTSI2.190e-1261.90Zinc finger, FYVE domain containing 28 n=1 Tax=Ect... [more]
A0A6H5JNT5_9PHAE2.670e-1261.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397DHR0_9STRA3.020e-1252.94FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A3L6VMC4_9STRA3.590e-1252.94FYVE-type domain-containing protein n=9 Tax=Aphano... [more]
A0A836C8R8_9STRA5.290e-1153.33FYVE zinc finger-domain-containing protein (Fragme... [more]
A0A397AVI5_9STRA1.080e-1057.50FYVE-type domain-containing protein n=2 Tax=Aphano... [more]
A0A024UGW9_9STRA2.390e-1058.97FYVE-type domain-containing protein n=1 Tax=Aphano... [more]
R1BV73_EMIHU4.680e-1050.00FYVE-type domain-containing protein (Fragment) n=2... [more]
G4ZCM7_PHYSP7.270e-1046.30FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A485L0Q8_9STRA7.340e-1054.76Aste57867_14238 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8474contigP-wetherbeei_contig8474:1534..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMR5
PFAMsDUF3480,FYVE,PI3Ka,PI3_PI4_kinase,zf-RING_2
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K04679
KEGG Pathwayko04144,ko04350,map04144,map04350
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Exons1
Evalue3.6e-13
EggNOG OGsKOG1841@1|root,KOG1841@2759|Eukaryota
Description1-phosphatidylinositol binding
Cds size183
COG categoryS
BRITEko00000,ko00001,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187042.3886654-CDS-P-wetherbeei_contig8474:1533..17161683187042.3886654-CDS-P-wetherbeei_contig8474:1533..1716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8474 1534..1716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8474.1.1prot_P-wetherbeei_contig8474.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8474 1534..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8474.1.1

>prot_P-wetherbeei_contig8474.1.1 ID=prot_P-wetherbeei_contig8474.1.1|Name=mRNA_P-wetherbeei_contig8474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
MALAAAQLPLEITTESLRDWVDNSARDQCLLCDRVFSLVSRKHHCRICGE
IVCGRCSAHRA
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mRNA from alignment at P-wetherbeei_contig8474:1534..1716-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8474.1.1 ID=mRNA_P-wetherbeei_contig8474.1.1|Name=mRNA_P-wetherbeei_contig8474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig8474:1534..1716- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGGCAGCAGCGCAGCTGCCGCTGGAGATCACGACGGAGAGCCT GCGCGACTGGGTGGATAATAGCGCACGGGACCAGTGCCTGCTCTGCGACC GCGTCTTCTCGCTCGTGTCCCGCAAGCACCACTGCCGCATCTGCGGGGAA ATAGTCTGCGGCCGCTGCTCCGCTCACCGCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8474:1534..1716-

>mRNA_P-wetherbeei_contig8474.1.1 ID=mRNA_P-wetherbeei_contig8474.1.1|Name=mRNA_P-wetherbeei_contig8474.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig8474:1534..1716- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCCTGGCAGCAGCGCAGCTGCCGCTGGAGATCACGACGGAGAGCCT
GCGCGACTGGGTGGATAATAGCGCACGGGACCAGTGCCTGCTCTGCGACC
GCGTCTTCTCGCTCGTGTCCCGCAAGCACCACTGCCGCATCTGCGGGGAA
ATAGTCTGCGGCCGCTGCTCCGCTCACCGCGCC
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