mRNA_P-wetherbeei_contig8463.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8463.2.1
Unique NamemRNA_P-wetherbeei_contig8463.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8463.2.1 vs. uniprot
Match: A0A7S1ULT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1ULT7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.590e-6
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 3 
Query:  420 EDPYSFKDDDNPEEWPDTKCIICRINRGGPCKMLWRKFERCM 545
            EDPY    D+ PE+  +T C IC+INR GPC+ LWRKFE CM
Sbjct:   41 EDPY----DNLPEQDEETHCEICKINRRGPCRPLWRKFEACM 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8463.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1ULT7_9STRA2.590e-659.52Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8463contigP-wetherbeei_contig8463:946..2695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SYX5
Model size1264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue5.14e-05
EggNOG OGs2EZ7H@1|root,2T0K1@2759|Eukaryota
Cds size966
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8463.2.1prot_P-wetherbeei_contig8463.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8463 1211..2459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.9437613-UTR-P-wetherbeei_contig8463:945..9871683187041.9437613-UTR-P-wetherbeei_contig8463:945..987Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8463 946..987 +
1683187041.957038-UTR-P-wetherbeei_contig8463:1190..12101683187041.957038-UTR-P-wetherbeei_contig8463:1190..1210Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8463 1191..1210 +
1683187041.998417-UTR-P-wetherbeei_contig8463:2459..26951683187041.998417-UTR-P-wetherbeei_contig8463:2459..2695Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8463 2460..2695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.966962-CDS-P-wetherbeei_contig8463:1210..16861683187041.966962-CDS-P-wetherbeei_contig8463:1210..1686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8463 1211..1686 +
1683187041.977279-CDS-P-wetherbeei_contig8463:1805..19171683187041.977279-CDS-P-wetherbeei_contig8463:1805..1917Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8463 1806..1917 +
1683187041.9885538-CDS-P-wetherbeei_contig8463:2081..24591683187041.9885538-CDS-P-wetherbeei_contig8463:2081..2459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8463 2082..2459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8463.2.1

>prot_P-wetherbeei_contig8463.2.1 ID=prot_P-wetherbeei_contig8463.2.1|Name=mRNA_P-wetherbeei_contig8463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
MWQRSATTVRAALAAVPLAAVGATAARQAEAFEGSKSLAQLSFGAGPVEK
RVGSQIALPSTQATLPPPADLLVASASPAPHESAPPKQQDRFASATAATP
PAEGAAGDTTDAGTAADGMEDPYSFKDDDNPEEWPDTKCIICRINRGGPC
KMLWRKFERCMDLAAERKDDKEVKCEQYFDAHARCASQNLEDYYLHAYSR
FADEDEKSEEEPAAAAPSAMGAPAVFSAAPPAETPAPAAAKSGEEGIVAS
SDGAAPKHRDSAVPPASDGGGGGGGRRGGSGGRGGWFGSGGRGGGTGRGG
GGRGGSGLGTARNAPPEAAAP*
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mRNA from alignment at P-wetherbeei_contig8463:946..2695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8463.2.1 ID=mRNA_P-wetherbeei_contig8463.2.1|Name=mRNA_P-wetherbeei_contig8463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1750bp|location=Sequence derived from alignment at P-wetherbeei_contig8463:946..2695+ (Phaeothamnion wetherbeei SAG_119_79)
CTCAACCTTAGAAGGCGAGAGAGCGCGATACATAGACCAAATGTGAGTCT
CTCCGTTGACGGTGGTCGTGCGCTGGCATCTATCTCGCTTTTTCGAACGC
CGTACAGGCTTTGTGCGGTTTATCTGTCATGACGATACGTGATTCCCCTT
CGGCTTCTTTCCTGGACCACTCTCTCCAACCCAGATAACAGCAGTTCGTA
ACGCCATTGAACTCCTGCTTGCGCACCACAATTTCGCGCACGCAGCGGTT
GGTGTATCCTAAGAGATGTGGCAGCGCTCGGCAACGACGGTGCGAGCCGC
GTTGGCCGCAGTGCCATTAGCGGCAGTAGGTGCGACCGCTGCGCGACAGG
CAGAGGCGTTCGAGGGTTCAAAGTCACTGGCGCAATTGTCGTTCGGCGCG
GGGCCCGTGGAGAAACGTGTGGGGTCCCAAATTGCGCTGCCCTCAACGCA
GGCGACCTTGCCGCCACCGGCGGACCTTCTGGTGGCGTCTGCATCCCCCG
CACCACACGAATCGGCGCCGCCGAAACAGCAGGATCGCTTTGCATCCGCA
ACGGCAGCAACCCCGCCAGCGGAAGGCGCCGCCGGCGATACCACTGATGC
CGGCACCGCTGCTGACGGAATGGAGGACCCTTACAGCTTCAAAGACGACG
ACAATCCGGAGGAGTGGCCGGACACGAAATGCATCATCTGCCGCATCAAC
CGCGGCGGGCCGTGCAAGATGCTCTGGCGAAAGTTCGAGAGGTGAAAAAC
GGTTTTGGCTGATTGGCGGCATCGTCCCACGAGTCGTCTCCGCTCACTGC
ATGTTTTGGGCCGCCGCGGGAAGCCTTTTCAAACGTAATCCCGCAAACCC
GAACCCGCAGGTGTATGGACCTCGCGGCGGAGCGAAAGGACGACAAGGAG
GTGAAGTGCGAGCAGTATTTCGACGCGCACGCCCGCTGCGCCAGCCAGAA
CCTCGAGGACTACTACCTGCATGTGTGTTTCTAGGAATTGGCGGCGGCGG
CGGCGGCGATGATAATGCCCGAGAGCTCCAGTTCATTCCCTCCTCGAGAT
GTGGAATCTCGGCTTAATTGTGGTCGGATTCCGTAACGCAAAGCATCCAC
CCCTTCCTCTCCCTGCTTTCCGTCTGGCCCTGCAAGGCATATTCGAGGTT
TGCCGACGAAGACGAGAAGAGCGAAGAAGAGCCGGCCGCTGCCGCTCCAT
CAGCCATGGGTGCCCCGGCGGTCTTTTCAGCGGCCCCGCCGGCAGAAACG
CCTGCCCCCGCCGCAGCAAAGAGTGGCGAGGAGGGAATAGTGGCGAGCAG
CGACGGAGCGGCGCCGAAACACCGCGATTCGGCTGTTCCGCCCGCGTCGG
ACGGCGGCGGCGGTGGCGGCGGCAGGCGTGGTGGGAGCGGCGGACGGGGC
GGATGGTTTGGCAGCGGCGGACGAGGCGGCGGCACCGGGCGCGGCGGCGG
AGGCCGAGGCGGCAGCGGGCTCGGGACCGCGCGCAATGCTCCGCCAGAAG
CAGCAGCGCCATGACTTATGCCGTTGATAATGCGAACGGGAACTCCTGTA
GCCGATACCTCTGGCAAATTGCTTGGGTGAGAATGGTGAAGGTGGGCAAT
TTATAGGCATCAAAAGTGGGAAACTGGGGAAGAGGGGAAGGCAACCGGGA
GCAACACGACAAGCGATGCCGCCTCTGAAAACGGACGGGGCAGGCGGAGG
CGCGCGTATTACAGCCAGCACCGACAGACCCATTAAATTCTAGTGACTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8463:946..2695+

>mRNA_P-wetherbeei_contig8463.2.1 ID=mRNA_P-wetherbeei_contig8463.2.1|Name=mRNA_P-wetherbeei_contig8463.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig8463:946..2695+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCAGCGCTCGGCAACGACGGTGCGAGCCGCGTTGGCCGCAGTGCC
ATTAGCGGCAGTAGGTGCGACCGCTGCGCGACAGGCAGAGGCGTTCGAGG
GTTCAAAGTCACTGGCGCAATTGTCGTTCGGCGCGGGGCCCGTGGAGAAA
CGTGTGGGGTCCCAAATTGCGCTGCCCTCAACGCAGGCGACCTTGCCGCC
ACCGGCGGACCTTCTGGTGGCGTCTGCATCCCCCGCACCACACGAATCGG
CGCCGCCGAAACAGCAGGATCGCTTTGCATCCGCAACGGCAGCAACCCCG
CCAGCGGAAGGCGCCGCCGGCGATACCACTGATGCCGGCACCGCTGCTGA
CGGAATGGAGGACCCTTACAGCTTCAAAGACGACGACAATCCGGAGGAGT
GGCCGGACACGAAATGCATCATCTGCCGCATCAACCGCGGCGGGCCGTGC
AAGATGCTCTGGCGAAAGTTCGAGAGGTGTATGGACCTCGCGGCGGAGCG
AAAGGACGACAAGGAGGTGAAGTGCGAGCAGTATTTCGACGCGCACGCCC
GCTGCGCCAGCCAGAACCTCGAGGACTACTACCTGCATGCATATTCGAGG
TTTGCCGACGAAGACGAGAAGAGCGAAGAAGAGCCGGCCGCTGCCGCTCC
ATCAGCCATGGGTGCCCCGGCGGTCTTTTCAGCGGCCCCGCCGGCAGAAA
CGCCTGCCCCCGCCGCAGCAAAGAGTGGCGAGGAGGGAATAGTGGCGAGC
AGCGACGGAGCGGCGCCGAAACACCGCGATTCGGCTGTTCCGCCCGCGTC
GGACGGCGGCGGCGGTGGCGGCGGCAGGCGTGGTGGGAGCGGCGGACGGG
GCGGATGGTTTGGCAGCGGCGGACGAGGCGGCGGCACCGGGCGCGGCGGC
GGAGGCCGAGGCGGCAGCGGGCTCGGGACCGCGCGCAATGCTCCGCCAGA
AGCAGCAGCGCCATGA
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