mRNA_P-wetherbeei_contig8458.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8458.1.1
Unique NamemRNA_P-wetherbeei_contig8458.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8458.1.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.680e-20
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 EEEGAPKYDVDAALWMLQQVNIYQTRLALISEKLAAKGYKVRPIVPRPPGLRCTRATEEHPVPCRIYLDAEPDAKVVAPCKCKG 252
            EE  +  YD  A  WM+QQ+ +YQTR ALIS  LA KGYK+R IVP P GL C  +TEE  + CR+Y++AE    VVAPCKCKG
Sbjct:  146 EEVESVLYDEKAVEWMMQQLCMYQTRTALISNPLAEKGYKLREIVPSPRGLLCALSTEERRMDCRMYVEAE----VVAPCKCKG 225
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BLAST of mRNA_P-wetherbeei_contig8458.1.1 vs. uniprot
Match: A0A7S3XMD3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMD3_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 4.870e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 EEEGAPKYDVDAALWMLQQVNIYQTRLALISEKLAAKGYK--VRPIVPRPPG--LRCTRATEEHPVPCRIYLDAEPDAKVVAPCKCKG 252
            +EE    YD D ALW+L Q+++Y  R AL++++L   G+   +  IV    G  L    +TEE P+PCRIY +AE  +KVVAPCKCKG
Sbjct:   71 DEEELTSYDQDTALWLLNQMHVYHARTALLAKELRKTGHLTGLAAIVQEERGNKLDIALSTEEKPMPCRIYYEAEAGSKVVAPCKCKG 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8458.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUK4_9PHAE3.680e-2057.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XMD3_HETAK4.870e-1546.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8458contigP-wetherbeei_contig8458:1610..2565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size252
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-14_006620.1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.6371005-CDS-P-wetherbeei_contig8458:1609..16661683187041.6371005-CDS-P-wetherbeei_contig8458:1609..1666Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8458 1610..1666 +
1683187041.6487637-CDS-P-wetherbeei_contig8458:1987..20411683187041.6487637-CDS-P-wetherbeei_contig8458:1987..2041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8458 1988..2041 +
1683187041.6593258-CDS-P-wetherbeei_contig8458:2424..25651683187041.6593258-CDS-P-wetherbeei_contig8458:2424..2565Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8458 2425..2565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8458.1.1prot_P-wetherbeei_contig8458.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8458 1610..2565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8458.1.1

>prot_P-wetherbeei_contig8458.1.1 ID=prot_P-wetherbeei_contig8458.1.1|Name=mRNA_P-wetherbeei_contig8458.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
EEEGAPKYDVDAALWMLQQVNIYQTRLALISEKLAAKGYKVRPIVPRPPG
LRCTRATEEHPVPCRIYLDAEPDAKVVAPCKCKG
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mRNA from alignment at P-wetherbeei_contig8458:1610..2565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8458.1.1 ID=mRNA_P-wetherbeei_contig8458.1.1|Name=mRNA_P-wetherbeei_contig8458.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=956bp|location=Sequence derived from alignment at P-wetherbeei_contig8458:1610..2565+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAGAGGGCGCACCGAAATATGATGTTGACGCGGCCCTCTGGATGCT
GCAACAGGTCAGTTTTCTGCTGGTCGACGAAGCGCCAGAAGGCAATAATA
TCTGGCTGGACTTCTGATGATGGCTTTTTCCTTGGATTCGGAAGCTTGCA
CTCCGCCTTCTCCGAAGCTTGCATTCCTCCTTTTCCATTGTCGGTTCTGC
TAACTTTACTGTAGCTGAAGCACTCGGTTTGCCGCCATTATTTAGTCGTG
GACGATGAGCCTGCCGCCTGCTCCCGCCGCTTTAATACATTTTCAGAAGT
CGAGACAGGAGAAATAAATTTCTGAATTTCTCATGCGTAAGAGAGTTTTG
CGTCGCGATTGCTTACTGACACCAACAGGTCAACATTTATCAGACAAGGC
TGGCCCTCATCTCGGAAAAGCTGGCGGCCAAGGTGAGCTCGCGGCGCAAA
GGAAGACGTCGACCGCCCGTCGTTCACCTCTGTCCGGCCGTATCCGGCCG
CGTCCGACCAGCATCCTTTCTCCCTCCCTCCGCGTTGTGGTATGAAGAAT
GCGGTCTGTGAGAGCGGATCGGAAACGCTCGCTGCTGTTGAAATAGCGTC
TCACCTTTGCGGGGCCAGCCCGTCTCCGGACGTCCTCCATCCAATGCGTC
CTATTGGTTCCGAAGTTCCCTTCCTGCATTGATCAAAAGGCGTGAAATCG
TGGACTTTAGAAAAGTGCAAAACCGGAAATATGTCTCACTCCGGTTTTCT
CACCTTACGTGAATCACAACAAATCCTCTTCCCTTCCCATCTTCGCCCCT
CTAAAACGAGTCCAGGGGTACAAGGTGCGGCCAATCGTGCCGCGGCCGCC
GGGCCTGCGCTGCACGCGGGCAACGGAGGAGCACCCGGTGCCATGCCGGA
TCTATCTCGATGCCGAGCCCGACGCCAAAGTCGTCGCGCCCTGCAAGTGC
AAAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8458:1610..2565+

>mRNA_P-wetherbeei_contig8458.1.1 ID=mRNA_P-wetherbeei_contig8458.1.1|Name=mRNA_P-wetherbeei_contig8458.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig8458:1610..2565+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAGAGGGCGCACCGAAATATGATGTTGACGCGGCCCTCTGGATGCT
GCAACAGGTCAACATTTATCAGACAAGGCTGGCCCTCATCTCGGAAAAGC
TGGCGGCCAAGGGGTACAAGGTGCGGCCAATCGTGCCGCGGCCGCCGGGC
CTGCGCTGCACGCGGGCAACGGAGGAGCACCCGGTGCCATGCCGGATCTA
TCTCGATGCCGAGCCCGACGCCAAAGTCGTCGCGCCCTGCAAGTGCAAAG
GT
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