mRNA_P-wetherbeei_contig8450.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8450.2.1
Unique NamemRNA_P-wetherbeei_contig8450.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: A0A7S1BBF5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBF5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.990e-15
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 3 
Query:   57 HADGVTVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRITENLCSQSHTIFDGIPAAVINRMGELSEIRNVEPGELLVPAGATRAELWLVVMGTVRV 440
            H +G+  LA +  G YFGETALM+++PRTTSV      L+++V +  ++NFLKVCP+++  +TQ MK R+ E L S     F GIP     ++ +  EIR  +  ++L   G      ++V+ G V++
Sbjct:  300 HDNGIC-LALLGDGDYFGETALMVDIPRTTSVTATQKTLLLTVERNDWNNFLKVCPNVRNDITQVMKDRMIEKLTSLDIPFFQGIPTESFTKISKSIEIRQFQLDDILFCEGDIGHHFYIVIHGAVQI 426
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: A0A7S2KVM8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KVM8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-11
Identity = 42/126 (33.33%), Postives = 72/126 (57.14%), Query Frame = 3 
Query:   72 TVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRITENLCSQSHTIFDGIPAAVINRMGELSEIRNVEPGELLVPAGATRAELWLVVMGTVRVGRT 449
            T +A++  G YFGET+L++N+PRT + +T+   L ++V K  F NFLKVC S++ T+ + MK+R+ + L S     F G+P   ++ +    EI  V+ G ++   G      +++  G V +  T
Sbjct:  265 TCVAKLGRGDYFGETSLLVNIPRTMTAKTKQRSLFLTVDKVDFENFLKVC-SVKETVDRMMKNRMIQMLSSLGIPFFVGLPTEKLSSISNSVEIHEVDKGSVIFREGDVGDCFYIIFYGEVSIETT 389
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: A0A5D6Y002_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y002_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.300e-6
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 3 
Query:   72 TVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRI-TENLCSQSHTIFDGIPAAVINRMGELSEIRNVEP----GELLVPAGATRAELWLVVMGTVRV 440
            T LA + AG++FGE AL+IN+PR  +V+ +  C+++S+ K SF   L   P ++  +   +K R+  + L S     F  IP   I+RM + S I ++      G+L++   +  A    +V G + +
Sbjct:  255 TPLATLGAGSFFGEMALLINIPRAATVKAKESCMLMSIEKESFHELLDKAPDVKKNVYTLLKERLWVKGLMSGVVPFFSSIP---IDRMLQFSHIMDISDSVHRGDLVMDQESGEARFAFLVFGALEI 379
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: A0A7S2QUR8_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUR8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.070e-6
Identity = 33/122 (27.05%), Postives = 67/122 (54.92%), Query Frame = 3 
Query:   75 VLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRITENLCSQSHTIFDGIPAAVINRMGELSEIRNVEPGELLVPAGATRAELWLVVMGTVRV 440
            VLA ++ G YFGE A+M+++PR+++V     CLV++V+K ++  FL      ++ +   MKSR+       S   F+ +       + +  E+ ++  G +++  G    + ++++ GTV+V
Sbjct:  712 VLATLNGGDYFGEMAVMVSMPRSSTVVAAEKCLVLTVSKDNWQEFLSHHEHTRLAVEAHMKSRLMGMFSKMSIPFFEKVADDKFLELSQGCEVLDLPEGHVIMKQGDRGDQFYVIINGTVQV 833
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: B3RV15_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RV15_TRIAD)

HSP 1 Score: 57.8 bits (138), Expect = 6.660e-6
Identity = 39/147 (26.53%), Postives = 76/147 (51.70%), Query Frame = 3 
Query:   63 DGVTVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQ-ITMTQA------MKSRIT---ENLCSQSHT-----------IFDGIPAAVINRMGELSEIRNVEPGELLVPAGATRAELWLVVMGTVRV 440
            DG  + A ++ G++FGE A+M ++PRT SV   T+C+++++T+  F + L+  P L+ + MT+A       KS +T   EN   +              +F+      + ++    + R V+ GE+++  G    E++ +V G V++
Sbjct:  218 DGEVIYAELAEGSFFGEIAIMFDMPRTCSVRASTNCIILAITRDKFRSLLEEDPKLKDVVMTEARSRLLKFKSHLTKESENFGGEFEIPSIAESLKNIPLFENCDQKFLYQLALHIKPRLVQAGEIIISKGEIGREMFFLVRGMVKI 364
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: G5A1X4_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1X4_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 7.790e-6
Identity = 25/65 (38.46%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:   72 TVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRI 266
            T LA++ AG++FGE +L+IN+PR  +V+    C+++S+ K SF   L  CP +Q+++++ +K R+
Sbjct:  226 TPLAKLEAGSFFGEMSLLINIPRAATVKALESCMLMSIEKKSFHTLLDQCPDVQVSVSKLLKERL 290
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: G5A1V9_PHYSP (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A1V9_PHYSP)

HSP 1 Score: 56.2 bits (134), Expect = 2.320e-5
Identity = 24/65 (36.92%), Postives = 46/65 (70.77%), Query Frame = 3 
Query:   72 TVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRI 266
            T LA++ AG++FGE +L+IN+PR  +V+    C+++S+ K SF   L  CP +++++++ +K R+
Sbjct:  213 TPLAKLEAGSFFGEMSLLINIPRAATVKALESCMLMSIEKKSFHTLLDQCPDVKVSVSKLLKERL 277
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BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Match: A0A1V5XFS1_9DELT (cAMP-activated global transcriptional regulator CRP n=1 Tax=Deltaproteobacteria bacterium ADurb.Bin207 TaxID=1852869 RepID=A0A1V5XFS1_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 2.910e-5
Identity = 44/137 (32.12%), Postives = 63/137 (45.99%), Query Frame = 3 
Query:   63 DGVTVLARISAGTYFGETALMINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRITENLCSQSHTIF----DGIPAAVINRMGELSEIRNVEPGELLVPAGATRAELWLVVMGTVRVGRTREEQ 461
            D  TVLAR++AG+ FGE AL+   PR  SV      +++   K +        PS+   +    + R+ +NL   S  +     D  PA +     E    R  EPGE+L+  G T A L L+  G V V R   E+
Sbjct:  232 DQTTVLARLTAGSLFGEMALLSRAPRAASVIACRPSILLVARKDALDQVAVGFPSVGTVLASHCQRRMVQNLIRTSAILRAVGPDERPALI-----ERFVTRTFEPGEILIEQGETAAGLHLIASGEVSVSREENEE 363
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8450.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S1BBF5_9STRA2.990e-1537.50Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2KVM8_9STRA1.740e-1133.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A5D6Y002_9STRA3.300e-630.47Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2QUR8_9STRA5.070e-627.05Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
B3RV15_TRIAD6.660e-626.53Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
G5A1X4_PHYSP7.790e-638.46Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
G5A1V9_PHYSP2.320e-536.92Cyclic nucleotide-binding domain-containing protei... [more]
A0A1V5XFS1_9DELT2.910e-532.12cAMP-activated global transcriptional regulator CR... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8450contigP-wetherbeei_contig8450:1162..2774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000014070
PFAMsRGS,cNMP_binding
Model size821
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.34e-06
EggNOG OGsCOG0664@1|root,KOG0614@2759|Eukaryota,1MBM9@121069|Pythiales
Descriptionregulatory subunit. Source PGD
Cds size513
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.3168592-UTR-P-wetherbeei_contig8450:1161..12831683187041.3168592-UTR-P-wetherbeei_contig8450:1161..1283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8450 1162..1283 +
1683187041.3743594-UTR-P-wetherbeei_contig8450:2588..27741683187041.3743594-UTR-P-wetherbeei_contig8450:2588..2774Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8450 2589..2774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.3287656-CDS-P-wetherbeei_contig8450:1283..13301683187041.3287656-CDS-P-wetherbeei_contig8450:1283..1330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8450 1284..1330 +
1683187041.348911-CDS-P-wetherbeei_contig8450:1688..17911683187041.348911-CDS-P-wetherbeei_contig8450:1688..1791Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8450 1689..1791 +
1683187041.3632324-CDS-P-wetherbeei_contig8450:2225..25881683187041.3632324-CDS-P-wetherbeei_contig8450:2225..2588Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8450 2226..2588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8450.2.1prot_P-wetherbeei_contig8450.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8450 1284..2588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8450.2.1

>prot_P-wetherbeei_contig8450.2.1 ID=prot_P-wetherbeei_contig8450.2.1|Name=mRNA_P-wetherbeei_contig8450.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MINVPRTTSVETETDCLVVSVTKASFSNFLKVCPSLQITMTQAMKSRITE
NLCSQSHTIFDGIPAAVINRMGELSEIRNVEPGELLVPAGATRAELWLVV
MGTVRVGRTREEQCGARGTAIEESWALGPTEVTEETRDGKRWGRLLIRVE
TAPILCVARDRNRMTHEQME*
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mRNA from alignment at P-wetherbeei_contig8450:1162..2774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8450.2.1 ID=mRNA_P-wetherbeei_contig8450.2.1|Name=mRNA_P-wetherbeei_contig8450.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1613bp|location=Sequence derived from alignment at P-wetherbeei_contig8450:1162..2774+ (Phaeothamnion wetherbeei SAG_119_79)
CCGAGGATGAGGCCGTACGGGAAGCGTCGGCAGAGGCATCGTCGACGAAT
CAGGCGCACGCCGACGGCGTTACAGTTCTCGCCCGCATTTCCGCTGGAAC
GTACTTTGGCGAGACGGCGCTGATGATCAACGTGCCGCGAACGACATCGG
TCGAGACCGAGACGGACTGGTGAGCGGTTCGCGAAAGGCGAAGATGGCTC
CCATGTGCTGGCCCCGTTCTCCTTCTCTATATAACTGGTGGATTTGGGAC
AGCAGCATCCGCACTGGTTGACTTGACATCCACGTGTTCGTACATGAGAC
TGCCCTATTGGCAAGCCTCATTGGTCCAGCGCGCGGCGAAACGTAAGGTG
ACCACTCGGCTTCTTGTATTTGGTCGTACGCGGGTCTCTCCAGCACGACA
GCGCGATTCTCGGTGCTCAGATGCTCTAAACCAATCCAGTTAAGTCAAAA
CTTCCTGGCCTCTCCGCCTCCTTCCTTCTCGGCGGTGGCACCGGCGGCGG
CGGGGGTCACGGTGATGGCGGCGGCAGCTTGGTGGTGTCGGTGACGAAGG
CGTCCTTTAGCAACTTTCTGAAAGTGTGCCCGTCGCTCCAAATTACAATG
ACACAAGCCATGAAGTCGCGCATCACCGAGGTGAGCTAAGCGGAGGCGGC
GGTTCGCGGTGGCGGTGGAGGCGGGGATGGCGACAAGCGACCGCGGCGGA
GGTAGGGATGGCGGACGGCGGCAAACGGGGCGGCGGCGGTGGCAGGCAGC
AGCAGCATCACCGGCAGTTGCAGGCAAAGGCGGCGGCGGCAGGCGGTGGG
GGTGGCGGCAGCGCCGATGGCAACGGTGACGACGACGGCTGCGACAGGTA
GCAGCGGTGGGCGGCGGCTGCGACATGCGGCGGCAGTGGTGGCTGTAGCA
CTGGCACAGTGCTGAAACTCGTCTTTACCAATCATCTTGGCTGAGGTTAA
CCTCAACTTTCCTTCACACATTCTCTCTGTCCCTTTTCCTCCCTTCTGTC
TTCTTTCCTCTCTTCGCGCCCGCCGCTTCCGTTGTCGCGCCTGCTTTCCC
TTCTCGTCAATCAGAACCTGTGCAGCCAAAGCCACACCATATTCGACGGC
ATACCAGCCGCTGTAATCAACCGCATGGGCGAGCTCTCGGAGATACGCAA
CGTGGAGCCCGGAGAGCTGCTCGTGCCGGCGGGCGCCACACGCGCCGAGC
TGTGGCTGGTGGTGATGGGCACCGTGCGGGTCGGGCGTACTCGCGAGGAG
CAGTGCGGCGCGCGGGGCACCGCCATCGAGGAGAGCTGGGCACTCGGCCC
AACCGAGGTGACAGAGGAGACTCGCGATGGGAAGCGGTGGGGAAGACTGC
TTATAAGGGTGGAGACGGCGCCCATTCTGTGCGTGGCACGAGACAGGAAC
CGGATGACGCATGAGCAGATGGAGTGATAAAGGGGTCGGATTCGTTCCAC
AAACGACAATGCGTTTAGATGTGCAATGCGTGCGGGCTGCCTACTAAACT
GCGTACTTTTGCCTAGCGCTGGTGCCCCTTCCGGCCAGCTCCTCGTTTGC
CGTTGGTCCTGAAAATATTTCCCCGTTCCGACCCATGCCCTCGGCCCCTC
AACGTTCCCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8450:1162..2774+

>mRNA_P-wetherbeei_contig8450.2.1 ID=mRNA_P-wetherbeei_contig8450.2.1|Name=mRNA_P-wetherbeei_contig8450.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig8450:1162..2774+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCAACGTGCCGCGAACGACATCGGTCGAGACCGAGACGGACTGCTT
GGTGGTGTCGGTGACGAAGGCGTCCTTTAGCAACTTTCTGAAAGTGTGCC
CGTCGCTCCAAATTACAATGACACAAGCCATGAAGTCGCGCATCACCGAG
AACCTGTGCAGCCAAAGCCACACCATATTCGACGGCATACCAGCCGCTGT
AATCAACCGCATGGGCGAGCTCTCGGAGATACGCAACGTGGAGCCCGGAG
AGCTGCTCGTGCCGGCGGGCGCCACACGCGCCGAGCTGTGGCTGGTGGTG
ATGGGCACCGTGCGGGTCGGGCGTACTCGCGAGGAGCAGTGCGGCGCGCG
GGGCACCGCCATCGAGGAGAGCTGGGCACTCGGCCCAACCGAGGTGACAG
AGGAGACTCGCGATGGGAAGCGGTGGGGAAGACTGCTTATAAGGGTGGAG
ACGGCGCCCATTCTGTGCGTGGCACGAGACAGGAACCGGATGACGCATGA
GCAGATGGAGTGA
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