mRNA_P-wetherbeei_contig845.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig845.2.1
Unique NamemRNA_P-wetherbeei_contig845.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig845.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig845contigP-wetherbeei_contig845:3862..4471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size447
Hectar predicted targeting categorymitochondrion
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.2104766-CDS-P-wetherbeei_contig845:3861..39821683187041.2104766-CDS-P-wetherbeei_contig845:3861..3982Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig845 3862..3982 -
1683187041.2219326-CDS-P-wetherbeei_contig845:4147..44131683187041.2219326-CDS-P-wetherbeei_contig845:4147..4413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig845 4148..4413 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187041.2319467-UTR-P-wetherbeei_contig845:4413..44711683187041.2319467-UTR-P-wetherbeei_contig845:4413..4471Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig845 4414..4471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig845.2.1prot_P-wetherbeei_contig845.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig845 3862..4413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig845.2.1

>prot_P-wetherbeei_contig845.2.1 ID=prot_P-wetherbeei_contig845.2.1|Name=mRNA_P-wetherbeei_contig845.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MSSAALVRFSRKLVASSAVSRPVTIGAFNNATACSWNNSFKGIVRFSSDA
ARRRDNAGAASGAAYDDREQQNGSAADSMDSSSVKNTGGAAMDQTKETAS
SMGDNAKETANKMRERASSAKEGAKEKMQ
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mRNA from alignment at P-wetherbeei_contig845:3862..4471-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig845.2.1 ID=mRNA_P-wetherbeei_contig845.2.1|Name=mRNA_P-wetherbeei_contig845.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=610bp|location=Sequence derived from alignment at P-wetherbeei_contig845:3862..4471- (Phaeothamnion wetherbeei SAG_119_79)
AAGGGAGAAGGAGCGACGGAGAGGAGTGAAAATATAAGAGAGCATCAGTA
AAGCAAGCATGTCTTCTGCTGCCTTGGTTCGCTTTTCCCGCAAGCTCGTG
GCGTCCTCTGCGGTTTCTCGTCCTGTCACCATCGGCGCGTTCAATAACGC
GACGGCATGCTCGTGGAACAACAGCTTTAAGGGAATTGTGCGCTTCTCCA
GCGACGCCGCCAGGCGGCGCGATAACGCGGGAGCAGCTTCTGGTGCTGCT
TACGACGACCGGGAGCAGCAAAATGGATCTGCGGCGGACTCGATGGATTC
GAGCTCCGTCAAGAACACCGGCGGGTACGGGCTTTCAAATGCATTCGCTA
TATCTTTTCCCTTCTAGCTGGACGCGTCAATTGCAAGAGGATCTTGTCGC
AAAGAACCACACATCGCTTTTCCATCTGCCGACCTGACATTCATTTGGTA
TCAACTGGCCACGCTACTCGCTCCTCTTTCGGCTGGCAGGGCGGCGATGG
ATCAGACGAAGGAAACGGCGAGCTCGATGGGCGACAACGCCAAGGAGACA
GCGAACAAGATGCGCGAGCGGGCTTCGTCCGCCAAGGAGGGCGCGAAGGA
GAAGATGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig845:3862..4471-

>mRNA_P-wetherbeei_contig845.2.1 ID=mRNA_P-wetherbeei_contig845.2.1|Name=mRNA_P-wetherbeei_contig845.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig845:3862..4471- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTTCTGCTGCCTTGGTTCGCTTTTCCCGCAAGCTCGTGGCGTCCTC
TGCGGTTTCTCGTCCTGTCACCATCGGCGCGTTCAATAACGCGACGGCAT
GCTCGTGGAACAACAGCTTTAAGGGAATTGTGCGCTTCTCCAGCGACGCC
GCCAGGCGGCGCGATAACGCGGGAGCAGCTTCTGGTGCTGCTTACGACGA
CCGGGAGCAGCAAAATGGATCTGCGGCGGACTCGATGGATTCGAGCTCCG
TCAAGAACACCGGCGGGGCGGCGATGGATCAGACGAAGGAAACGGCGAGC
TCGATGGGCGACAACGCCAAGGAGACAGCGAACAAGATGCGCGAGCGGGC
TTCGTCCGCCAAGGAGGGCGCGAAGGAGAAGATGCAG
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