mRNA_P-wetherbeei_contig8447.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8447.1.1
Unique NamemRNA_P-wetherbeei_contig8447.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: A0A1H2PP61_9BURK (NitT/TauT family transport system ATP-binding protein n=1 Tax=Chitinasiproducens palmae TaxID=1770053 RepID=A0A1H2PP61_9BURK)

HSP 1 Score: 365 bits (936), Expect = 4.120e-125
Identity = 179/250 (71.60%), Postives = 211/250 (84.40%), Query Frame = 1
Query:   28 FHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDLVK 777
            F A  L VTY SSRGPVKA++G+ AT+  GEF+S+LGPSGCGKSTLLK+V+GLLKPS G V L G+ I GPR D+GIVFQQPTLLPWQT L+N+LLPIRTLGL+   GR +A ALL+LVGLEKFAN+YP+ELSGGMQQR+GIARG++HDP LLLMDEPFAALDAMTREHMM ELQRIWMAAGKSV+FITHSIPEAVFLSDR+ VLS RP   +++  + LPRPRT ETM  + F E+C  LRALF+++ +
Sbjct:    9 FRAKGLVVTYDSSRGPVKAIDGLDATVADGEFVSILGPSGCGKSTLLKIVSGLLKPSAGTVELGGASITGPRRDIGIVFQQPTLLPWQTVLQNILLPIRTLGLNRTEGRARADALLRLVGLEKFANNYPHELSGGMQQRIGIARGMIHDPGLLLMDEPFAALDAMTREHMMAELQRIWMAAGKSVIFITHSIPEAVFLSDRVLVLSQRPAHLVKDMTIALPRPRTEETMGTREFGEYCTALRALFNEITR 258          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: A0A853FFX8_9BURK (ABC transporter ATP-binding protein n=1 Tax=Pusillimonas soli TaxID=659016 RepID=A0A853FFX8_9BURK)

HSP 1 Score: 353 bits (907), Expect = 2.630e-120
Identity = 176/259 (67.95%), Postives = 212/259 (81.85%), Query Frame = 1
Query:    7 PATLQPLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDLVKFN 783
            PA   PL  ADAL+V Y +S GP+ A++ +S  LG  +F+SV+GPSGCGKSTL+KV +GLLKP+ G+V L G+ +D PR DVGIVFQQPTLLPW+  L+NVL+P+R LG+D+ A + KA+ LL+LVGLEK+A+HYPNELSGGMQQRVGIARGL+HDP+LLLMDEPF+ALD MTR+HM IELQRIWMA  KS +FITHSIPEAVFLSDRI V+SA PG  +RE  V LPRPRT+ET+A   F E C ELRALFS LV+FN
Sbjct:   26 PAASTPLLEADALSVVYKTSNGPITAMQDVSLRLGSSDFVSVVGPSGCGKSTLIKVFSGLLKPTKGSVRLGGTSVDQPRGDVGIVFQQPTLLPWKNVLDNVLVPVRALGMDVPAYKKKAMDLLRLVGLEKYASHYPNELSGGMQQRVGIARGLIHDPSLLLMDEPFSALDTMTRDHMSIELQRIWMATRKSALFITHSIPEAVFLSDRILVMSAHPGTIVREISVNLPRPRTVETLAAPEFNELCAELRALFSQLVQFN 284          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: A0A0T7CSJ6_BORP1 (Putative ABC transport proteins, ATP-binding component n=14 Tax=Bordetella TaxID=517 RepID=A0A0T7CSJ6_BORP1)

HSP 1 Score: 352 bits (903), Expect = 4.970e-120
Identity = 177/251 (70.52%), Postives = 203/251 (80.88%), Query Frame = 1
Query:   22 PLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDLV 774
            P+F    L VTY SSRGP  ALEG S T+ +GEFLS+LGPSGCGKSTLLKV AGLLKPS G   LRG  IDGPR DVGIVFQ  TLLPWQ  L+NVLLPIRT+G+D+AAG  +A ALLK +GLEKF  HYP+ELSGGMQQRVGIARGL+HDP+LLLMDEPFAALDAMTRE MM+ELQRIW    KSVMFITHSIPEAVFLS ++ VL  RP R +RE +++LP PRT ET+A  +FA+ C ELR+LFS++ 
Sbjct:   11 PVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFLSILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAIDGPRRDVGIVFQHATLLPWQNVLDNVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIHDPSLLLMDEPFAALDAMTRETMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPARVLREIDIDLPFPRTEETLASPKFAQLCAELRSLFSNVA 261          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: A0A5E4YS96_9BURK (Bicarbonate transport ATP-binding protein CmpD n=1 Tax=Pandoraea anhela TaxID=2508295 RepID=A0A5E4YS96_9BURK)

HSP 1 Score: 351 bits (900), Expect = 1.190e-119
Identity = 181/251 (72.11%), Postives = 206/251 (82.07%), Query Frame = 1
Query:   16 LQPLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSD 768
            L P+F A+ L VTY SSRG  KAL+  S +LG GEFLSVLGPSGCGKSTLLKV +GLL PS G     G PI GPR DVGIVFQQ TLLPWQT LENVLLPIRTLG+++  G  +A +LLK++GLEKF +HYP ELSGGMQQRVGIARGL+HDP+LLLMDEPFAALDAMTREHMM ELQRIWM   KSV+FITHSIPEAVFLS+R+ VLSARP R +RE  V+LP PRT ET++  RFAE C+ELRA+FS+
Sbjct:    4 LAPVFRAEKLTVTYQSSRGATKALDSFSTSLGAGEFLSVLGPSGCGKSTLLKVASGLLAPSSGIAEFGGRPIKGPRRDVGIVFQQATLLPWQTVLENVLLPIRTLGMNVEEGALRARSLLKMMGLEKFESHYPYELSGGMQQRVGIARGLIHDPSLLLMDEPFAALDAMTREHMMEELQRIWMETRKSVLFITHSIPEAVFLSNRVIVLSARPARILREVTVDLPVPRTQETLSHPRFAELCSELRAMFSN 254          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: K0MA14_BORPB (Probable ABC transporter, ATP-binding component n=21 Tax=Alcaligenaceae TaxID=506 RepID=K0MA14_BORPB)

HSP 1 Score: 348 bits (894), Expect = 2.760e-118
Identity = 176/253 (69.57%), Postives = 207/253 (81.82%), Query Frame = 1
Query:   25 LFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDLVKFN 783
            L  A  L+V Y +S+GP+ A++ +S  LG GEF+SVLGPSGCGKSTL+KV +GLLKPSGG   L G+PID PR DVGIVFQQPTLLPW+T L+NVL+PIR LG+++A GR KA+ LL+LVGLEKFA++YP+ELSGGMQQRVGIARGL+HDPALLLMDEPF+ALD MTR+ M IELQRIWMA  KS +FITHSI EAVFLSDRI V+SARPGR IRE  V LPRPRTL T+ +  F   C ELR LF  LV+F+
Sbjct:   35 LLTASNLSVVYRTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKSTLIKVFSGLLKPSGGKALLNGTPIDEPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVAEGRAKAMELLRLVGLEKFASNYPSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALFITHSIAEAVFLSDRIVVMSARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFDQLVQFD 287          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: UPI001BA5C69B (ABC transporter ATP-binding protein n=3 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BA5C69B)

HSP 1 Score: 346 bits (887), Expect = 1.400e-117
Identity = 179/253 (70.75%), Postives = 201/253 (79.45%), Query Frame = 1
Query:   19 QPLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDLVK 777
            +P+F    L VTY+SSRG  KALE  + TL +GEFLS+LGPSGCGKSTLLKV AGLL PS G   L G PI GPR DVGIVFQQ TLLPWQ  ++N+LLPIRTLG+DL  GR +A  LL+L+GLEKF  HYP+ELSGGMQQRVGIARGLVHDP+LLLMDEPFAALDAMTREHMM+ELQRIWM   KSV+FITHSIPEAVFLS R+ VLS RP R +R+  +ELP PRT ETM    FAE C ELRA+FS   K
Sbjct:   11 EPVFQTKNLDVTYSSSRGKTKALEDFTTTLEKGEFLSILGPSGCGKSTLLKVAAGLLPPSSGVAELDGRPITGPRRDVGIVFQQATLLPWQNVIDNILLPIRTLGMDLDKGRARARELLELMGLEKFEKHYPHELSGGMQQRVGIARGLVHDPSLLLMDEPFAALDAMTREHMMVELQRIWMDTRKSVIFITHSIPEAVFLSSRVLVLSPRPARIMRDVNIELPLPRTEETMGLPAFAELCAELRAMFSPRAK 263          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: A0A246QAY1_9BURK (ABC transporter n=2 Tax=Achromobacter TaxID=222 RepID=A0A246QAY1_9BURK)

HSP 1 Score: 345 bits (884), Expect = 1.010e-116
Identity = 183/258 (70.93%), Postives = 203/258 (78.68%), Query Frame = 1
Query:    1 TAPA-TLQPLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDL 771
            T PA T + +F AD LAVTY SSRGPV AL G S TL +GEFLSVLGPSGCGKSTLLKV +GLLKPS G   L G+ I GPR DVGIVFQ  TLLPWQT LENV+LPIRTLG+D   G   A  LL+++GLE+F NHYP+ELSGGMQQRVGIARGLVHDP LLLMDEPFAALDAMTRE MM+ELQRIWM   KSV+FITHSIPEAVFLS RI VLS RP R ++E  V+LP PR  +T+   RF E C ELRALFS +
Sbjct:   31 TTPAGTAKAVFRADDLAVTYRSSRGPVPALSGFSTTLHEGEFLSVLGPSGCGKSTLLKVASGLLKPSAGVAELGGTRIQGPRKDVGIVFQHATLLPWQTVLENVMLPIRTLGMDRQRGLIHARELLRMMGLEQFENHYPHELSGGMQQRVGIARGLVHDPNLLLMDEPFAALDAMTRESMMVELQRIWMETRKSVLFITHSIPEAVFLSSRIIVLSPRPARIVKEMHVDLPLPRNEQTLGSPRFGELCAELRALFSSI 288          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: W0HN72_9GAMM (ABC transporter, ATP binding component n=2 Tax=Sodalis TaxID=84565 RepID=W0HN72_9GAMM)

HSP 1 Score: 343 bits (879), Expect = 1.870e-116
Identity = 176/246 (71.54%), Postives = 200/246 (81.30%), Query Frame = 1
Query:   25 LFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALF 762
            +F A+ L VTY SSRG   AL+  + TL QGEFLS+LGPSGCGKSTL+KV AGLL PS G   L G+PI GPR DVGIVFQQ TLLPWQT L+NV+LPIRTLG+D+  G  +A ALL+LVGLEKF +HYP+ELSGGMQQRVGIARGL+HDP+LLLMDEPFAALDA++REHMM+ELQRIWM   KSV+FITHSIPEAVFLS +I VLS RP + IRE EV+LP PR  ETMA  RF E C ELR LF
Sbjct:    7 VFRAENLQVTYQSSRGATPALDNFNTTLAQGEFLSILGPSGCGKSTLMKVAAGLLTPSAGIAELDGTPITGPRRDVGIVFQQATLLPWQTVLQNVMLPIRTLGMDIKQGEIRARALLRLVGLEKFEHHYPHELSGGMQQRVGIARGLIHDPSLLLMDEPFAALDALSREHMMVELQRIWMENRKSVIFITHSIPEAVFLSTKIIVLSPRPAKIIREIEVDLPLPRNEETMASARFNELCTELRHLF 252          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: A0A7D4I0T6_9BURK (ABC transporter ATP-binding protein n=3 Tax=Achromobacter TaxID=222 RepID=A0A7D4I0T6_9BURK)

HSP 1 Score: 343 bits (880), Expect = 2.630e-116
Identity = 177/255 (69.41%), Postives = 205/255 (80.39%), Query Frame = 1
Query:   19 QPLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFSDLVKFN 783
            +PL  AD ++V Y SS+GP+ A++ +S  LG GEF+SVLGPSGCGKSTL+KV +GLL  S G   L G+PID PR DVGIVFQQPTLLPW+T L+NVL+PIR L  D+ AG  +AL LL+LVGLEKFAN+YP+ELSGGMQQRVGIARGLVHDPALLLMDEPF+ALD MTR+ M IELQRIWMA  KS +FITHSI EAVFLSDRI V+SARPGR IRE  V+LPRPRTL T+ +  F   C ELR LF  LVKF+
Sbjct:   23 RPLLTADNVSVVYRSSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKSTLVKVFSGLLTTSSGKALLNGTPIDKPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALRKDVEAGTARALELLRLVGLEKFANNYPSELSGGMQQRVGIARGLVHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALFITHSIAEAVFLSDRIVVMSARPGRIIREVAVDLPRPRTLATLNDPEFTRLCAELRELFDQLVKFD 277          
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Match: UPI00164D004F (ABC transporter ATP-binding protein n=1 Tax=Ramlibacter sp. GTP1 TaxID=2079448 RepID=UPI00164D004F)

HSP 1 Score: 337 bits (863), Expect = 5.240e-114
Identity = 166/241 (68.88%), Postives = 201/241 (83.40%), Query Frame = 1
Query:   43 LAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGCGKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTALENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVGIARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHSIPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNELRALFS 765
            L V Y SSRGPV+AL+ +S  +  G F+SVLGPSGCGKSTLLK+ +GLLKP+ G + L G PIDGPR +VGIVFQQPTLLPW+T L+NVL+P+R +G D+ A R++AL LLK+V L++FA HYP+ELSGGMQQRVGI R LVHDP+LLLMDEPFAALDAMTRE MM+ELQRIW   GKSV+FITHSIPEAVFLSDR+ VLS RPGR ++  E++LPRPR+++TMA  RFAE  NELR +F+
Sbjct:   13 LDVVYASSRGPVQALQQLSFDVAPGAFVSVLGPSGCGKSTLLKLASGLLKPTSGNIALAGQPIDGPRREVGIVFQQPTLLPWKTVLDNVLVPVRAMGGDVRAARERALDLLKMVKLDQFAGHYPHELSGGMQQRVGIVRALVHDPSLLLMDEPFAALDAMTRESMMVELQRIWSTTGKSVLFITHSIPEAVFLSDRVVVLSPRPGRVVQTLEIDLPRPRSIQTMASPRFAELSNELREVFA 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8447.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H2PP61_9BURK4.120e-12571.60NitT/TauT family transport system ATP-binding prot... [more]
A0A853FFX8_9BURK2.630e-12067.95ABC transporter ATP-binding protein n=1 Tax=Pusill... [more]
A0A0T7CSJ6_BORP14.970e-12070.52Putative ABC transport proteins, ATP-binding compo... [more]
A0A5E4YS96_9BURK1.190e-11972.11Bicarbonate transport ATP-binding protein CmpD n=1... [more]
K0MA14_BORPB2.760e-11869.57Probable ABC transporter, ATP-binding component n=... [more]
UPI001BA5C69B1.400e-11770.75ABC transporter ATP-binding protein n=3 Tax=Rhodop... [more]
A0A246QAY1_9BURK1.010e-11670.93ABC transporter n=2 Tax=Achromobacter TaxID=222 Re... [more]
W0HN72_9GAMM1.870e-11671.54ABC transporter, ATP binding component n=2 Tax=Sod... [more]
A0A7D4I0T6_9BURK2.630e-11669.41ABC transporter ATP-binding protein n=3 Tax=Achrom... [more]
UPI00164D004F5.240e-11468.88ABC transporter ATP-binding protein n=1 Tax=Ramlib... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8447contigP-wetherbeei_contig8447:195..980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog257310.BB1174
PFAMsABC_tran
Model size786
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02049
KEGG TC3.A.1.16,3.A.1.17
KEGG ModuleM00188
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.15e-121
EggNOG OGsCOG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2WEDA@28216|Betaproteobacteria,3T7B0@506|Alcaligenaceae
DescriptionABC transporter
Cds size786
COG categoryP
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.938016-CDS-P-wetherbeei_contig8447:194..9801683187040.938016-CDS-P-wetherbeei_contig8447:194..980Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8447 195..980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8447.1.1prot_P-wetherbeei_contig8447.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8447 195..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8447.1.1

>prot_P-wetherbeei_contig8447.1.1 ID=prot_P-wetherbeei_contig8447.1.1|Name=mRNA_P-wetherbeei_contig8447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=262bp
TAPATLQPLFHADALAVTYTSSRGPVKALEGMSATLGQGEFLSVLGPSGC
GKSTLLKVVAGLLKPSGGAVTLRGSPIDGPRPDVGIVFQQPTLLPWQTAL
ENVLLPIRTLGLDLAAGRDKALALLKLVGLEKFANHYPNELSGGMQQRVG
IARGLVHDPALLLMDEPFAALDAMTREHMMIELQRIWMAAGKSVMFITHS
IPEAVFLSDRIAVLSARPGRTIREFEVELPRPRTLETMAEKRFAEHCNEL
RALFSDLVKFN*
back to top

mRNA from alignment at P-wetherbeei_contig8447:195..980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8447.1.1 ID=mRNA_P-wetherbeei_contig8447.1.1|Name=mRNA_P-wetherbeei_contig8447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig8447:195..980+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGCGCCGGCCACACTCCAGCCGCTCTTCCACGCCGACGCGCTCGCGGT CACCTACACGTCCTCGAGGGGACCGGTCAAGGCGCTGGAGGGCATGAGCG CCACCCTCGGCCAGGGGGAGTTCCTGTCCGTGCTCGGCCCTTCCGGCTGC GGCAAGTCCACGCTGCTCAAGGTCGTGGCCGGCCTGCTCAAGCCCTCGGG CGGTGCCGTAACGTTGCGCGGCTCGCCGATCGACGGCCCGCGGCCGGACG TGGGAATCGTGTTCCAGCAGCCCACCCTGCTGCCCTGGCAGACTGCGCTC GAGAACGTGCTGCTCCCGATCCGCACGCTGGGCCTCGACCTGGCGGCCGG CCGCGACAAGGCCCTGGCGCTCCTGAAGCTCGTGGGCCTGGAGAAGTTTG CGAACCACTACCCCAACGAACTCTCCGGCGGCATGCAGCAGCGGGTCGGC ATCGCGCGCGGGCTGGTGCACGACCCGGCGCTGCTGCTGATGGACGAGCC CTTCGCCGCGCTCGACGCGATGACGCGCGAGCACATGATGATCGAGCTGC AGCGCATCTGGATGGCGGCCGGGAAGTCGGTCATGTTCATCACGCACTCG ATTCCCGAGGCCGTGTTCCTTTCCGACCGCATCGCGGTGCTCTCCGCGCG GCCCGGGCGCACGATCCGCGAGTTCGAGGTCGAACTCCCGAGGCCGCGCA CCCTGGAAACCATGGCGGAGAAGCGCTTCGCCGAGCACTGCAACGAGCTG CGGGCACTTTTTTCCGACCTGGTGAAGTTCAACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig8447:195..980+

>mRNA_P-wetherbeei_contig8447.1.1 ID=mRNA_P-wetherbeei_contig8447.1.1|Name=mRNA_P-wetherbeei_contig8447.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=786bp|location=Sequence derived from alignment at P-wetherbeei_contig8447:195..980+ (Phaeothamnion wetherbeei SAG_119_79)
ACAGCGCCGGCCACACTCCAGCCGCTCTTCCACGCCGACGCGCTCGCGGT
CACCTACACGTCCTCGAGGGGACCGGTCAAGGCGCTGGAGGGCATGAGCG
CCACCCTCGGCCAGGGGGAGTTCCTGTCCGTGCTCGGCCCTTCCGGCTGC
GGCAAGTCCACGCTGCTCAAGGTCGTGGCCGGCCTGCTCAAGCCCTCGGG
CGGTGCCGTAACGTTGCGCGGCTCGCCGATCGACGGCCCGCGGCCGGACG
TGGGAATCGTGTTCCAGCAGCCCACCCTGCTGCCCTGGCAGACTGCGCTC
GAGAACGTGCTGCTCCCGATCCGCACGCTGGGCCTCGACCTGGCGGCCGG
CCGCGACAAGGCCCTGGCGCTCCTGAAGCTCGTGGGCCTGGAGAAGTTTG
CGAACCACTACCCCAACGAACTCTCCGGCGGCATGCAGCAGCGGGTCGGC
ATCGCGCGCGGGCTGGTGCACGACCCGGCGCTGCTGCTGATGGACGAGCC
CTTCGCCGCGCTCGACGCGATGACGCGCGAGCACATGATGATCGAGCTGC
AGCGCATCTGGATGGCGGCCGGGAAGTCGGTCATGTTCATCACGCACTCG
ATTCCCGAGGCCGTGTTCCTTTCCGACCGCATCGCGGTGCTCTCCGCGCG
GCCCGGGCGCACGATCCGCGAGTTCGAGGTCGAACTCCCGAGGCCGCGCA
CCCTGGAAACCATGGCGGAGAAGCGCTTCGCCGAGCACTGCAACGAGCTG
CGGGCACTTTTTTCCGACCTGGTGAAGTTCAACTGA
back to top