mRNA_P-wetherbeei_contig8446.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8446.2.1
Unique NamemRNA_P-wetherbeei_contig8446.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8446.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8446contigP-wetherbeei_contig8446:850..2230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1381
Hectar predicted targeting categoryother localisation
Exons1
Cds size840
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.8828337-UTR-P-wetherbeei_contig8446:849..9071683187040.8828337-UTR-P-wetherbeei_contig8446:849..907Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8446 850..907 +
1683187040.9083858-UTR-P-wetherbeei_contig8446:1747..22301683187040.9083858-UTR-P-wetherbeei_contig8446:1747..2230Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8446 1748..2230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.8977132-CDS-P-wetherbeei_contig8446:907..17471683187040.8977132-CDS-P-wetherbeei_contig8446:907..1747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8446 908..1747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8446.2.1prot_P-wetherbeei_contig8446.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8446 908..1747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8446.2.1

>prot_P-wetherbeei_contig8446.2.1 ID=prot_P-wetherbeei_contig8446.2.1|Name=mRNA_P-wetherbeei_contig8446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
MPEDMRGAALAEYEKYSVTPSRGGKGGGGNGGSGGGWAEASKSGRYGASA
SSSGGGAGASGTEGTRSGHGRRSIKSSISGSFGGGSTEWVEAPSMSQVDC
DVLGALPEDVRQQVLRDMNCARLGGTSGGPGVGTGGSRGGSGGNYGVYDG
GVSRGGGRVRACRGAELAASVDAEAAGDDEDEPELPLLSDVRAAVRQWTA
EEADERTSADSERVAALYHYLSRLVHGHRLDDAAAAMRFLRRQAALPEAP
PAWRAAFKALLAEAQELVIRRIGAPLKLD*
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mRNA from alignment at P-wetherbeei_contig8446:850..2230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8446.2.1 ID=mRNA_P-wetherbeei_contig8446.2.1|Name=mRNA_P-wetherbeei_contig8446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1381bp|location=Sequence derived from alignment at P-wetherbeei_contig8446:850..2230+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGATCCGGCCGTGTTTGCGAGCCTGCCGCAGGCCGTCCGCTTCAAGT
TCGCCAACATGCCGGAGGACATGCGGGGGGCGGCGCTGGCCGAGTACGAA
AAGTACTCTGTGACTCCCTCGCGTGGGGGCAAGGGAGGCGGCGGTAACGG
CGGCAGTGGCGGTGGCTGGGCGGAAGCCAGTAAAAGCGGCAGATATGGCG
CAAGCGCCAGCAGCAGCGGCGGCGGTGCCGGCGCCAGTGGCACCGAGGGC
ACTCGCAGCGGCCACGGCCGCCGCAGCATCAAGAGCAGCATCAGTGGCAG
CTTCGGAGGTGGCAGCACCGAGTGGGTGGAGGCGCCCAGCATGTCACAAG
TTGACTGCGACGTACTCGGCGCCCTGCCTGAGGATGTGCGGCAGCAAGTG
CTACGCGATATGAATTGTGCTCGCCTTGGCGGCACCTCTGGCGGGCCAGG
AGTCGGAACCGGCGGCAGCCGCGGCGGCAGCGGCGGTAATTACGGCGTCT
ATGATGGCGGTGTTAGCCGCGGTGGCGGCAGGGTGCGGGCTTGTCGCGGC
GCAGAGCTGGCCGCTTCCGTCGATGCTGAAGCAGCCGGCGACGACGAGGA
TGAGCCGGAGCTGCCACTGCTGTCCGATGTGCGCGCTGCGGTGCGCCAGT
GGACGGCGGAGGAAGCCGACGAGCGGACGTCGGCGGACTCGGAGCGGGTG
GCGGCACTCTACCACTACCTGTCCCGGCTAGTGCATGGGCACCGACTAGA
CGATGCGGCGGCGGCGATGCGGTTCCTGCGGCGGCAGGCGGCGCTGCCGG
AGGCGCCGCCAGCATGGCGGGCGGCGTTCAAGGCGCTACTGGCCGAAGCG
CAAGAGCTTGTGATTAGACGGATCGGTGCGCCACTCAAGCTGGACTGACA
GTCGGCCGGGCCTGCAGGGAGCGTGTGGAGGTTGGAAAGGTTTCTTCGCA
GCGCCTGTTCTCGGTGATTGCAGCGCCACCGGCGCCGCCCTTCGTGTGAG
TCGGCACGCGGGAAGGCGGTGGCGCAGTTGCCACAGCCACAGTTGTGTGC
CGGCCGTCAGGAAGCTAGGCTGTTGGCGCCCTTGAGGGGCAGGGAGGGGA
GGAATCACGGGGATGGGACAAGGGTGTGTAGCTTTGTTGCAAAGGTGGGA
AAACAACCTCTTGCTGTGTATGAAAAGAGAAAGGTTGGCACACACAGTTC
ATGTTGGCATTGGGGAGACTGTGGAGGCATCTGGAAGGGGCCATACGACG
GATGGCAAGACGGAAAGAAACCCTTTAAAGATCAGCGAGCATTGCACGAT
CACAGTCGCAGGACAGGTCATTGAAAGAATCCGGAGGCGGGGGAGAGGGA
GAGGTGGGTAAAGTAGCAGGTAAAGATGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8446:850..2230+

>mRNA_P-wetherbeei_contig8446.2.1 ID=mRNA_P-wetherbeei_contig8446.2.1|Name=mRNA_P-wetherbeei_contig8446.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig8446:850..2230+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGAGGACATGCGGGGGGCGGCGCTGGCCGAGTACGAAAAGTACTC
TGTGACTCCCTCGCGTGGGGGCAAGGGAGGCGGCGGTAACGGCGGCAGTG
GCGGTGGCTGGGCGGAAGCCAGTAAAAGCGGCAGATATGGCGCAAGCGCC
AGCAGCAGCGGCGGCGGTGCCGGCGCCAGTGGCACCGAGGGCACTCGCAG
CGGCCACGGCCGCCGCAGCATCAAGAGCAGCATCAGTGGCAGCTTCGGAG
GTGGCAGCACCGAGTGGGTGGAGGCGCCCAGCATGTCACAAGTTGACTGC
GACGTACTCGGCGCCCTGCCTGAGGATGTGCGGCAGCAAGTGCTACGCGA
TATGAATTGTGCTCGCCTTGGCGGCACCTCTGGCGGGCCAGGAGTCGGAA
CCGGCGGCAGCCGCGGCGGCAGCGGCGGTAATTACGGCGTCTATGATGGC
GGTGTTAGCCGCGGTGGCGGCAGGGTGCGGGCTTGTCGCGGCGCAGAGCT
GGCCGCTTCCGTCGATGCTGAAGCAGCCGGCGACGACGAGGATGAGCCGG
AGCTGCCACTGCTGTCCGATGTGCGCGCTGCGGTGCGCCAGTGGACGGCG
GAGGAAGCCGACGAGCGGACGTCGGCGGACTCGGAGCGGGTGGCGGCACT
CTACCACTACCTGTCCCGGCTAGTGCATGGGCACCGACTAGACGATGCGG
CGGCGGCGATGCGGTTCCTGCGGCGGCAGGCGGCGCTGCCGGAGGCGCCG
CCAGCATGGCGGGCGGCGTTCAAGGCGCTACTGGCCGAAGCGCAAGAGCT
TGTGATTAGACGGATCGGTGCGCCACTCAAGCTGGACTGA
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