mRNA_P-wetherbeei_contig844.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig844.1.1
Unique NamemRNA_P-wetherbeei_contig844.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig844.1.1 vs. uniprot
Match: W7TNM2_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNM2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.510e-7
Identity = 39/130 (30.00%), Postives = 61/130 (46.92%), Query Frame = 1 
Query:    1 LDLKIPG-SPSRFL-ALLHDIAFQSAVHDDGKDLDVRLTPWALGEGEEEVVLEVASFTPASVPVAAFRTLVFRHPVRTKFPGLPSHAVTEKKQ---EYRVHDSSCSSITLLEHTSVSNIPYGDYFTVHTV 375
            LDL +P  +P  +L +  HD +F      +  D DV + PW+  +     V      T  +      RT+V +HPV+ K PG+PSH  + K Q   E +++ +    I + E   V  +P+ D F V  V
Sbjct:  137 LDLNLPSITPDEYLESFWHDTSFYENFLKESGDRDVSIQPWSPAQPSTHSVAH-HKMTHRT------RTIVTKHPVKAKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVV 259
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BLAST of mRNA_P-wetherbeei_contig844.1.1 vs. uniprot
Match: A0A4D9D5L1_9STRA (VASt domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5L1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.510e-6
Identity = 39/130 (30.00%), Postives = 60/130 (46.15%), Query Frame = 1 
Query:    1 LDLKIPG-SPSRFL-ALLHDIAFQSAVHDDGKDLDVRLTPWALGEGEEEVVLEVASFTPASVPVAAFRTLVFRHPVRTKFPGLPSHAVTEKKQ---EYRVHDSSCSSITLLEHTSVSNIPYGDYFTVHTV 375
            LDL +P  +P  +L +  HD  F      +  D DV +  W+  +     V      T  +      RT+V +HPV+TK PG+PSH  + K Q   E +++ +    I + E   V  +P+ D F V  V
Sbjct:   38 LDLNLPSITPDEYLKSFWHDTTFYENFLKESGDRDVSVKSWSPAQPSTHSVAH-HKITHRT------RTIVTKHPVKTKMPGIPSHVRSTKTQVLSEEKINRNGSVIIRVHETNEVEGVPFADRFLVAVV 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig844.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
W7TNM2_9STRA8.510e-730.00VASt domain-containing protein n=1 Tax=Nannochloro... [more]
A0A4D9D5L1_9STRA3.510e-630.00VASt domain-containing protein n=1 Tax=Nannochloro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig844contigP-wetherbeei_contig844:55..438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog272952.HpaP802351
PFAMsDUF4782,FYVE,GRAM
Model size384
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.68e-06
EggNOG OGsKOG1818@1|root,KOG1818@2759|Eukaryota,3QETV@4776|Peronosporales
Descriptiondomain in glucosyltransferases, myotubularins and other putative membrane-associated proteins
Cds size384
COG categoryTU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.4669194-CDS-P-wetherbeei_contig844:54..4381683187040.4669194-CDS-P-wetherbeei_contig844:54..438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig844 55..438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig844.1.1prot_P-wetherbeei_contig844.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig844 55..438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig844.1.1

>prot_P-wetherbeei_contig844.1.1 ID=prot_P-wetherbeei_contig844.1.1|Name=mRNA_P-wetherbeei_contig844.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
LDLKIPGSPSRFLALLHDIAFQSAVHDDGKDLDVRLTPWALGEGEEEVVL
EVASFTPASVPVAAFRTLVFRHPVRTKFPGLPSHAVTEKKQEYRVHDSSC
SSITLLEHTSVSNIPYGDYFTVHTVSG*
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mRNA from alignment at P-wetherbeei_contig844:55..438+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig844.1.1 ID=mRNA_P-wetherbeei_contig844.1.1|Name=mRNA_P-wetherbeei_contig844.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig844:55..438+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGATCTCAAGATCCCAGGCTCTCCCTCACGGTTTCTCGCTCTGCTGCA
CGACATTGCTTTCCAGAGCGCCGTGCACGACGATGGCAAGGATCTGGATG
TAAGGCTCACACCGTGGGCACTTGGCGAAGGCGAGGAGGAGGTGGTGCTC
GAAGTCGCTTCGTTCACGCCGGCGTCGGTCCCCGTCGCGGCCTTCCGGAC
TCTGGTCTTCCGTCATCCCGTCCGAACGAAGTTTCCGGGGCTTCCAAGCC
ATGCGGTGACCGAGAAAAAGCAAGAATATCGCGTGCACGACAGCTCCTGC
AGCAGCATCACCCTGCTTGAGCACACAAGCGTGTCAAACATACCTTACGG
AGACTACTTCACTGTCCATACGGTAAGCGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig844:55..438+

>mRNA_P-wetherbeei_contig844.1.1 ID=mRNA_P-wetherbeei_contig844.1.1|Name=mRNA_P-wetherbeei_contig844.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig844:55..438+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGATCTCAAGATCCCAGGCTCTCCCTCACGGTTTCTCGCTCTGCTGCA
CGACATTGCTTTCCAGAGCGCCGTGCACGACGATGGCAAGGATCTGGATG
TAAGGCTCACACCGTGGGCACTTGGCGAAGGCGAGGAGGAGGTGGTGCTC
GAAGTCGCTTCGTTCACGCCGGCGTCGGTCCCCGTCGCGGCCTTCCGGAC
TCTGGTCTTCCGTCATCCCGTCCGAACGAAGTTTCCGGGGCTTCCAAGCC
ATGCGGTGACCGAGAAAAAGCAAGAATATCGCGTGCACGACAGCTCCTGC
AGCAGCATCACCCTGCTTGAGCACACAAGCGTGTCAAACATACCTTACGG
AGACTACTTCACTGTCCATACGGTAAGCGGTTGA
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