mRNA_P-wetherbeei_contig8437.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8437.3.1
Unique NamemRNA_P-wetherbeei_contig8437.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8437.3.1 vs. uniprot
Match: D7FUR5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR5_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 4.620e-51
Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = 2 
Query:   50 MNIAKGLIGEAARP-WEDEEGAHTPSGSKTPIALCGWLMKMKRAHRMFMSTWSRRWFTVEDGALVWYKSPSAPEECGRLPLQFIGAVRKFEAGAQGSFSFMVSGGGRNMLLRGEGANDVARWVRGLTLQIDLMRGGSIQGPPCGKLARR 493
            MN+A    G    P WE +EGAHTPSGSKTPI +CGWL+KMKR HR F STW+RRWFTVEDGA  WYK+ S+ + CGRL L  I +VR++     GS++F+V    R MLLR + AND +RW+RGLTLQ DL+ GG+ QGPP  K  RR
Sbjct:    1 MNLALAAFGGYPVPTWESQEGAHTPSGSKTPIIICGWLLKMKREHRKFRSTWNRRWFTVEDGAFNWYKTSSS-DACGRLSLLDIQSVRRYVGTEHGSYTFVVHATDREMLLRADSANDESRWIRGLTLQTDLVHGGTFQGPPSAKNRRR 148
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BLAST of mRNA_P-wetherbeei_contig8437.3.1 vs. uniprot
Match: A0A835ZH79_9STRA (PH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH79_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.070e-43
Identity = 68/110 (61.82%), Postives = 84/110 (76.36%), Query Frame = 2 
Query:  137 PIALCGWLMKMKRAHRMFMSTWSRRWFTVEDGALVWYKSPSAPEECGRLPLQFIGAVRKFEAGAQGSFSFMVSGGGRNMLLRGEGANDVARWVRGLTLQIDLMRGGSIQG 466
            PI LCGWL KMKR  R F STW+RRWFTV+DG L+WY SP+  E  G + L  I +V +FEAG QGSFSF+V+   RNMLLR E   D++RW+RG+TLQ+DL+RGG+IQG
Sbjct:    1 PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWYTSPNTVESSGSIRLHAIKSVSRFEAGCQGSFSFVVNSSDRNMLLRAETHADLSRWIRGITLQLDLLRGGTIQG 110
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BLAST of mRNA_P-wetherbeei_contig8437.3.1 vs. uniprot
Match: A0A7S2HE46_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE46_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.760e-29
Identity = 55/120 (45.83%), Postives = 72/120 (60.00%), Query Frame = 2 
Query:  134 TPIALCGWLMKMKRAHRMFMSTWSRRWFTVEDGALVWYKSPSAPEECGRLPLQFIGAVRKFEAGAQGSFSFMVSGGGRNMLLRGEGANDVARWVRGLTLQIDLMRGGSIQGPPCGKLARR 493
            +PI + GWL+K+KR  R+FMSTW+RRWFT++DG L WY    +    G + L+    V  FE G QG FSF++    RN+ LR E A  +  W  GL LQ+DL  GG+  GPP     RR
Sbjct:    8 SPIVMRGWLLKLKRNQRLFMSTWNRRWFTIQDGRLNWYSGKRSKNPSGSIDLEQFTDVEPFEIGGQGCFSFIIRTSDRNLFLRAESAQKLKYWKTGLQLQMDLFAGGTRLGPPTASNRRR 127
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8437.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUR5_ECTSI4.620e-5158.39PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZH79_9STRA2.070e-4361.82PH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S2HE46_9STRA1.760e-2945.83Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8437contigP-wetherbeei_contig8437:1702..2194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000020712
PFAMsPH
Model size493
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.74e-19
EggNOG OGs2BP2Z@1|root,2S1QW@2759|Eukaryota,1MGP9@121069|Pythiales
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-19_004210.1
DescriptionSource PGD
Cds size444
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.3508344-UTR-P-wetherbeei_contig8437:1701..17501683187040.3508344-UTR-P-wetherbeei_contig8437:1701..1750Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig8437 1702..1750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187040.3628945-CDS-P-wetherbeei_contig8437:1750..21941683187040.3628945-CDS-P-wetherbeei_contig8437:1750..2194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8437 1751..2194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8437.3.1prot_P-wetherbeei_contig8437.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8437 1751..2194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8437.3.1

>prot_P-wetherbeei_contig8437.3.1 ID=prot_P-wetherbeei_contig8437.3.1|Name=mRNA_P-wetherbeei_contig8437.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MNIAKGLIGEAARPWEDEEGAHTPSGSKTPIALCGWLMKMKRAHRMFMST
WSRRWFTVEDGALVWYKSPSAPEECGRLPLQFIGAVRKFEAGAQGSFSFM
VSGGGRNMLLRGEGANDVARWVRGLTLQIDLMRGGSIQGPPCGKLARR
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mRNA from alignment at P-wetherbeei_contig8437:1702..2194+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8437.3.1 ID=mRNA_P-wetherbeei_contig8437.3.1|Name=mRNA_P-wetherbeei_contig8437.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=493bp|location=Sequence derived from alignment at P-wetherbeei_contig8437:1702..2194+ (Phaeothamnion wetherbeei SAG_119_79)
TGGACCTTGAGGGCAGGAGGAGTGGGCACTCTCAAAATCGAGACAGAAGA
TGAACATCGCTAAAGGTCTCATCGGCGAGGCGGCTCGCCCGTGGGAGGAC
GAAGAGGGCGCGCACACACCGTCCGGCTCGAAAACGCCCATCGCTCTGTG
CGGCTGGCTGATGAAGATGAAACGCGCCCATCGAATGTTCATGTCAACAT
GGAGCCGGCGATGGTTCACCGTCGAGGACGGAGCGCTCGTTTGGTACAAG
TCTCCCTCGGCGCCGGAGGAATGCGGCAGGCTACCATTGCAATTCATCGG
AGCGGTTCGCAAGTTCGAGGCTGGGGCGCAGGGAAGCTTCAGCTTCATGG
TCTCCGGCGGCGGCCGCAACATGCTCCTGCGCGGCGAGGGCGCCAACGAC
GTGGCCCGTTGGGTGCGCGGCCTAACGCTCCAGATCGACCTTATGCGAGG
AGGTTCCATTCAGGGCCCACCGTGCGGAAAGCTGGCGCGACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8437:1702..2194+

>mRNA_P-wetherbeei_contig8437.3.1 ID=mRNA_P-wetherbeei_contig8437.3.1|Name=mRNA_P-wetherbeei_contig8437.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig8437:1702..2194+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACATCGCTAAAGGTCTCATCGGCGAGGCGGCTCGCCCGTGGGAGGA
CGAAGAGGGCGCGCACACACCGTCCGGCTCGAAAACGCCCATCGCTCTGT
GCGGCTGGCTGATGAAGATGAAACGCGCCCATCGAATGTTCATGTCAACA
TGGAGCCGGCGATGGTTCACCGTCGAGGACGGAGCGCTCGTTTGGTACAA
GTCTCCCTCGGCGCCGGAGGAATGCGGCAGGCTACCATTGCAATTCATCG
GAGCGGTTCGCAAGTTCGAGGCTGGGGCGCAGGGAAGCTTCAGCTTCATG
GTCTCCGGCGGCGGCCGCAACATGCTCCTGCGCGGCGAGGGCGCCAACGA
CGTGGCCCGTTGGGTGCGCGGCCTAACGCTCCAGATCGACCTTATGCGAG
GAGGTTCCATTCAGGGCCCACCGTGCGGAAAGCTGGCGCGACGG
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